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Title:
遺伝子型判定結果の評価方法及び評価システム
Document Type and Number:
Japanese Patent JP5065694
Kind Code:
B2
Abstract:

To provide a method and system for evaluating results of judging genotype signals from noise signals when a DNA fragment containing a gene of the object of analysis is amplified by a PCR (polymerase chain reaction) and detected by electrophoresis.

An outlier of genotyping results is detected by utilizing the fact that the height ratio of a stutter peak to a true peak for the same marker and the height ratio of a +A peak to a true peak have reproducibility, respectively and a constant size value can be expected in the case of the same allele of the same marker. Attention is paid to the reproducibility and a waveform data processed with the same marker or the same allele in the past utilizing the database is obtained or the waveform judged to be appropriate not as an outlier is additionally registered to the database to extend the database. Thereby, the evaluation ability is improved.

COPYRIGHT: (C)2008,JPO&INPIT


Inventors:
Yu Nakami
Ryo Nakashige
Yasuyuki Nozaki
Toshiko Matsumoto
Application Number:
JP2007018965A
Publication Date:
November 07, 2012
Filing Date:
January 30, 2007
Export Citation:
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Assignee:
Hitachi Solutions Co., Ltd.
International Classes:
G06F19/20; C12N15/09; C12Q1/68; G16B45/00; G01N27/447
Domestic Patent References:
JP2006017461A
JP2006079334A
JP2006163720A
Other References:
Holt et al.,TWGDAM Validation of AmpFISTR PCR Amplification Kits for Forensic DNA Casework,JOURNAL OF FORENSIC SCIENCES,2002年,Vol.47,No.1,P.66-96
Leclair et al.,Systematic Analysis of Stutter Percentages and Allele Peak Height and Peak Area Ratios at Heterozygous STR Loci for Forensic Casework and Database Samples,JOURNAL OF FORENSIC SCIENCES,2004年,Vol.49,No.5,P.1-13,PaperID JFS2003312
Palsson et al.,Using Quality Measures to Facilitate Allele Calling in High-Throughput Genotyping,Genome Research,1999年,Vol.9,No.10,P.1002-1012
Toshiko Matsumoto et al.,Novel algorithm for automated genotyping of microsatellites,Nucleic Acids Research,2004年,Vol.32,No.20,P.6069-6077
Attorney, Agent or Firm:
Yusuke Hiraki
Sekiya Mitsuo
Toshiaki Watanabe



 
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