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Title:
METHOD FOR ASSOCIATING DNA WITH cDNA CLONE, RECORDING MEDIUM WITH CORRESPONDENCE TABLE RECORDED THEREON, cDNA RETRIEVAL SERVICE PROVIDING METHOD AND cDNA RETRIEVAL SERVICE PROVIDING SERVER
Document Type and Number:
Japanese Patent JP2007041967
Kind Code:
A
Abstract:

To provide a association method of DNA and cDNA clones capable of easily obtaining a cDNA clone corresponding to DNA written in a database, and a table created by the method.

Base sequences in each file of a GeneChip database are used to perform homology retrieval of a FANTOM DB. Base sequences with no homology detected are used to perform homology retrieval of a third cDNA database, and each base sequence of clones with detected homology is used to perform homology retrieval of the FANTOM DB. Whether or not an amino acid sequence is included in a file of the FANTOM DB with homology detected in any step is retrieved. Each clone with no amino acid detected is used to perform homology retrieval of a fourth database, whether or not the amino acid sequence is included in a file of the FANTOM DB corresponding to a clone with detected homology is retrieved to create a correspondence table.


Inventors:
NAKAJIMA KAZUNORI
MAEDA TAKUYA
AJIOKA ITSUKI
Application Number:
JP2005227223A
Publication Date:
February 15, 2007
Filing Date:
August 04, 2005
Export Citation:
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Assignee:
KEIO GIJUKU
International Classes:
G06F19/00; G06F17/30; G06F19/20; G06F19/22
Attorney, Agent or Firm:
Isshiki International Patent Service Corporation