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Title:
2,5-DISUBSTITUTED 3-METHYL PYRAZINES AND 2,5,6-TRISUBSTITUTED 3-METHYL PYRAZINES AS ALLOSTERIC SHP2 INHIBITORS
Document Type and Number:
WIPO Patent Application WO/2018/013597
Kind Code:
A4
Abstract:
The present disclosure is directed to inhibitors of SHP2 and their use in the treatment of disease. Also disclosed are pharmaceutical compositions comprising the same.

Inventors:
JOGALEKAR ASH (US)
WON WALTER (US)
KOLTUN ELENA S (US)
GILL ADRIAN (US)
MELLEM KEVIN (US)
AAY NAING (US)
BUCKL ANDREAS (US)
SEMKO CHRISTOPHER (US)
KISS GERT (US)
Application Number:
PCT/US2017/041577
Publication Date:
April 05, 2018
Filing Date:
July 11, 2017
Export Citation:
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Assignee:
REVOLUTION MEDICINES INC (US)
JOGALEKAR ASH (US)
WON WALTER (US)
International Classes:
C07D241/18; A61K31/497; A61K31/4985; A61P35/00; C07D241/20; C07D403/04; C07D403/12
Attorney, Agent or Firm:
TONG, Connie C. et al. (US)
Download PDF:
Claims:
AMENDED CLAIMS

received by the International Bureau on 15 February 2018 (15.02.2018)

Claims:

1. A compound of Formula I-W:

I-W or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, and isomer thereof, wherein:

A is cycloalkyl, heterocycloalkyl, aryl, or heteroaryl, wherein cycloalkyl,

heterocycloalkyl, aryl, and heteroaryl are 5- to 12-membered monocyclic or 5- to 12- membered polycyclic;

Y1 is -S-, a direct bond, -NH-, -S(0)2- -S(0)2-NH- -C(=CH2) -, -CH-, or -S(O)-;

Y2 is -NRa-, -(CR¾)m- -C(O)-, -C(Ra)2NH- -(CRa2)mO- -C(0)N(Ra)-,

-N(Ra)C(0)-, -S(0)2N(Ra)-, -N(Ra)S(0)2-, -N(Ra)C(0)N(Ra)-, -N(Ra)C(S)N(Ra)-, -C(0)0-, -OC(O)-, -OC(0)N(Ra)-, -N(Ra)C(0)0- -C(0)N(Ra)0-, -N(Ra)C(S)-, -C(S)N(Ra)-, or -OC(0)0-; wherein the bond on the left side of Y2, as drawn, is bound to the pyrazine ring and the bond on the right side of the Y2 moiety, as drawn, is bound to R3;

R1 is independently, at each occurrence, -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2-C6alkynyl, -C3-C8cycloalkyl, -OH, -OR6, halogen, -NO2, -CN, - R5R6, -SR5, -S(0)2 R5R6, -S(0)2R5, -NR5S(0)2 R5R6, - R5S(0)2R6, -S(0) R5R6, -S(0)R5, - R5S(0) R5R6, - R5S(0)R6, -C(0)R5,-C02R5, -C(0)NR5R6, - R5C(0)R6, monocyclic or polycyclic heterocyclyl, spiroheterocyclyl, heteroaryl, or oxo, wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, heterocyclyl, spiroheterocyclyl, or heteroaryl is optionally substituted with one or more -OH, -NO2, oxo, =0, -CN, -R5, -OR5, -NR5R6, -SR5, -S(0)2NR5R6, -S(0)2R5, -NR5S(0)2NR5R6, -NR5S(0)2R6, -S(0)NR5R6, -S(0)R5, -NR5S(0)NR5R6, -NR5S(0)R6, heterocycle, aryl, or heteroaryl;

R2 is independently -OH, -CN, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2-C6alkynyl, F, Br, I, -C3-C8cycloalkyl, aryl, heterocyclyl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O, or heteroaryl containing 1-5

heteroatoms selected from the group consisting of N, S, P, and O; wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, heterocyclyl, or heteroaryl is optionally substituted with one or more -OH, halogen, -NO2, oxo, -CN, -R5, -OR5, - R5R6, -SR5, -S(0)2 R5R6, -S(0)2R5, - R5S(0)2 R5R6, - R5S(0)2R6, -S(0) R5R6, -S(0)R5, - R5S(0) R5R6, - R5S(0)R6, heterocycle, aryl, or heteroaryl; and wherein the heterocyclyl or heteroaryl is not attached via a nitrogen atom;

Ra is independently, at each occurrence, -H, -D, -OH, -C3-C8cycloalkyl, -Ci- C6alkyl, 3- to 12-membered heterocyclyl, or -(CH2)n-aryl, wherein each alkyl or cycloalkyl is optionally substituted with one or more - H2, or wherein 2 Ra, together with the carbon atom to which they are both attached, can combine to form a 3- to 8-membered cycloalkyl;

Rb is independently, at each occurrence, -H, -D, -OH, -Ci-C6alkyl, -C3- Cscycloalkyl, -C2-C6alkenyl, -(CH2)n-aryl, heterocyclyl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O, or heteroaryl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O; wherein each alkyl, cycloalkyl, alkenyl, heterocycle, heteroaryl, or -(CH2)n-aryl is optionally substituted with one or more -OH, halogen, -NO2, oxo, -CN, -R5, -OR5, -NR5R6, -SR5, -S(0)2NR5R6, -S(0)2R5,

-NR5S(0)2NR5R6, -NR5S(0)2R6, -S(0)NR5R6, -S(0)R5, -NR5S(0)NR5R6, -NR5S(0)R6, -C(0)NR5R6, -NR5C(0)R6, heterocycle, aryl, heteroaryl, -(CH2)nOH, -Ci-Cealkyl, -CF3,

R3 is independently -H, -Ci-C6alkyl, a 3- to 12-membered monocyclic or polycyclic heterocycle, a 5- to 12-membered spiroheterocycle, C3-C8cycloalkyl, or -(CH2)n-Rb, wherein each alkyl, spiroheterocycle, heterocycle, or cycloalkyl is optionally substituted with one or more -Ci-Cealkyl, -OH, -NH2, -ORb, -NHRb, -(CH2)nOH, heterocyclyl, or

spiroheterocyclyl; or

R3 can combine with Ra to form a 3- to 12-membered monocyclic or polycyclic heterocycle or a 5- to 12-membered spiroheterocycle, wherein each heterocycle or spiroheterocycle is optionally substituted with one or more -Ci-C6alkyl, halogen, -OH, -ORb, -NH2, -NHRb, heteroaryl, heterocyclyl, -(CH2)nNH2, -(CH2)nOH, -COORb,

-CONHRb, -CONH(CH2)nCOORb, -NHCOORb, -CF3, -CHF2, -CH2F, or =0;

R4 is independently -H, -D, -Ci-C6alkyl, -Ci-C6haloalkyl, -Ci-C6hydroxyalkyl, -CF2OH, -CHFOH, -NH-NHR5, -NH-OR5, -0-NR5R6, -NHC(0)R5,

-NHC(0)NHR5, -NHS(0)2R5, -NHS(0)2NHR5, -S(0)2OH, -C(0)OR5, -NH(CH2)nOH, -C(0)NH(CH2)nOH, -C(0)NH(CH2)nRb, -C(0)Rb, -NH2, -OH, -CN, -C(0)NR5R6, -S(0)2NR5R6, C3-C8cycloalkyl, aryl, or heterocyclyl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O, wherein each alkyl, cycloalkyl, or heterocyclyl is optionally substituted with one or more -OH, -NH2, -ORb, halogen, or oxo; wherein each aryl is optionally substituted with one or more -OH, - H2, or halogen; or

Ra and R4, together with the atom or atoms to which they are attached, can combine to form a monocyclic or poly cyclic C3-Ci2cycloalkyl or a monocyclic or poly cyclic 3- to 12- membered heterocycle, wherein the cycloalkyl or heterocycle is optionally substituted with oxo; wherein the heterocycle optionally comprises -S(0)2- in the heterocycle;

R5 is independently -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2- C6alkynyl, -C3-C8cycloalkyl, a monocyclic or poly cyclic 3- to 12-membered heterocycle, -OR7, -SR7, - R7R8, -NO2, -CF3, or -CN;

R6 is independently -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2- C6alkynyl, -C3-C8cycloalkyl, a monocyclic or poly cyclic 3- to 12-membered heterocycle, -OR7, -SR7, halogen, - R7R8, -NO2, -CF3, or -CN;

R7 and R8 are independently, at each occurrence, -H, -D, -Ci-C6alkyl,

-C2-C6alkenyl, -C4-C8cycloalkenyl, -C2-C6alkynyl, -C3-C8cycloalkyl, -ORb, or a monocyclic or poly cyclic 3- to 12-membered heterocycle, wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, or heterocycle is optionally substituted with one or more -OH, -SH, -NH2, -NO2, or -CN;

m is independently, at each occurrence, 1, 2, 3, 4, 5 or 6; and

n is independently, at each occurrence, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.

2. The compound of claim 1 wherein the compound is Formula I:

or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, or isomer thereof, wherein:

A is 5- to 12-membered monocyclic or polycyclic cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;

Y1 is -S- or a direct bond;

Y2 is -NRa- -(CR¾)m- -C(O)-, -C(Ra)2NH- -(CRa2)mO- -C(0)N(Ra)-,

-N(Ra)C(0)-, -S(0)2N(Ra)-, -N(Ra)S(0)2- -N(Ra)C(0)N(Ra)-, -N(Ra)C(S)N(Ra)-, -C(0)0- -OC(O)-, -OC(0)N(Ra)-, -N(Ra)C(0)0-, -C(0)N(Ra)0-, -N(Ra)C(S)-, -C(S)N(Ra)-, or -OC(0)0-; wherein the bond on the left side of Y2, as drawn, is bound to the pyrazine ring and the bond on the right side of the Y2 moiety is bound to R3;

R1 is independently, at each occurrence, -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -Ci-Cealkynyl, -C3-C8cycloalkyl, -OH, halogen, -NO2, -CN, - R5R6, -SR5, -S(0)2 R5R6, -S(0)2R5, - R5S(0)2 R5R6, - R5S(0)2R6, -S(0) R5R6, -S(0)R5, - R5S(0) R5R6, - R5S(0)R6, -C(0)R5, or -C02R5, wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, or cycloalkyl is optionally substituted with one or more -OH, -NO2, oxo, -CN, -R5, -OR5, -NR5R6, -SR5, -S(0)2NR5R6, -S(0)2R5, -NR5S(0)2NR5R6,

-NR5S(0)2R6, -S(0)NR5R6, -S(0)R5, -NR5S(0)NR5R6, -NR5S(0)R6, heterocycle, aryl, or heteroaryl;

R2 is independently -OH, -CN, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2-C6alkynyl, -C3-C8cycloalkyl, aryl, heterocyclyl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O, or heteroaryl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O; wherein each alkyl, alkenyl,

cycloalkenyl, alkynyl, cycloalkyl, heterocyclyl, or heteroaryl is optionally substituted with one or more -OH, halogen, -NO2, oxo, -CN, -R5, -OR5, -NR5R6, -SR5, -S(0)2NR5R6, -S(0)2R5, -NR5S(0)2NR5R6, -NR5S(0)2R6, -S(0)NR5R6, -S(0)R5, -NR5S(0)NR5R6, -NR5S(0)R6, heterocycle, aryl, or heteroaryl; and wherein the heterocyclyl or heteroaryl is not attached via a nitrogen atom;

Ra is independently, at each occurrence, -H, -D, -OH, -C3-C8cycloalkyl, or -Ci- C6alkyl, wherein each alkyl or cycloalkyl is optionally substituted with one or more -NH2, wherein 2 Ra, together with the carbon atom to which they are both attached, can combine to form a 3- to 8-membered cycloalkyl;

Rb is independently, at each occurrence, -H, -D, -Ci-C6alkyl, -C3-C8cycloalkyl, -C2-C6alkenyl, or heterocyclyl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O; wherein each alkyl, cycloalkyl, alkenyl, or heterocycle is optionally substituted with one or more -OH, halogen, -NO2, oxo, -CN, -R5, -OR5, -NR5R6, -SR5, -S(0)2NR5R6, -S(0)2R5, -NR5S(0)2NR5R6, -NR5S(0)2R6, -S(0)NR5R6, -S(0)R5, - NR5S(0)NR5R6, -NR5S(0)R6, heterocycle, aryl, or heteroaryl;

R3 is independently -Ci-C6alkyl or a 3- to 12-membered monocyclic or polycyclic heterocycle, wherein each alkyl or heterocycle is optionally substituted with one or more -Ci- Cealkyl, -OH, or -NH2; or R can combine with Ra to form a 3- to 12-membered monocyclic or poly cyclic heterocycle or a 5- to 12-membered spiroheterocycle, wherein each heterocycle or spiroheterocycle is optionally substituted with -Ci-C6alkyl, -OH, or - H2;

R4 is independently -H, -D, or -Ci-C6alkyl, wherein each alkyl is optionally substituted with one or more -OH, -NH2, halogen, or oxo; or

Ra and R4, together with the atom or atoms to which they are attached, can combine to form a monocyclic or poly cyclic C3-Ci2cycloalkyl or a monocyclic or poly cyclic 3- to 12- membered heterocycle, wherein the cycloalkyl or heterocycle is optionally substituted with oxo;

R5 is independently -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2- C6alkynyl, -C3-C8cycloalkyl, a monocyclic or poly cyclic 3- to 12-membered heterocycle, -OR7, -SR7, - R7R8, -NO2, or -CN;

R6 is independently -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2- C6alkynyl, -C3-C8cycloalkyl, a monocyclic or poly cyclic 3- to 12-membered heterocycle, -OR7, -SR7, halogen, - R7R8, -NO2, or -CN;

R7 and R8 are independently, at each occurrence, -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2-C6alkynyl, -C3-C8cycloalkyl, or a monocyclic or poly cyclic 3- to 12-membered heterocycle, wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, or heterocycle is optionally substituted with one or more -OH, -SH, -NH2, -NO2, or -CN; m is independently, at each occurrence, 1, 2, 3, 4, 5 or 6; and

n is independently, at each occurrence, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.

3. The compound of claim 1 wherein the compound is Formula I-W6:

I-W6

or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer,

thereof, wherein:

A is a 5- to 12-membered monocyclic or polycyclic heteroaryl;

Y1 is -S-; Y2 is - Ra-; wherein the bond on the left side of Y2, as drawn, is bound to the pyrazine ring and the bond on the right side of the Y2 moiety, as drawn, is bound to R3;

R3 is combined with Ra to form a 3- to 12-membered monocyclic or polycyclic heterocycle or a 5- to 12-membered spiroheterocycle, wherein each heterocycle or spiroheterocycle is optionally substituted with one or more -Ci-C6alkyl, -OH, - H2, heteroaryl, heterocyclyl, -(CH2)n H2, -COORb, -CO HRb, -CO H(CH2)nCOORb,

- HCOORb, -CF3, -CHF2, or -CH2F;

R1 is independently, at each occurrence, -H, -Ci-C6alkyl, -OH, halogen, -N02, -CN, - R5R6, -SR5, -C(0)R5, or -C02R5;

R2 is -Ci-Cealkyl;

Rb is independently, at each occurrence, -H or -Ci-C6alkyl;

R4 is -H, -Ci-Cealkyl, -Ci-Cehaloalkyl, -Ci-Cehydroxyalkyl, -CF2OH, -CHFOH, -C(0) H(CH2)nOH, -C(0) H(CH2)nRb, -C(0)Rb,-C(0) R5R6, -OH, or -CN, wherein alkyl is optionally substituted with one or more -OH, -NH2, halogen, or oxo; or

R5 and R6 are each independently, at each occurrence, -H or -Ci-C6alkyl; and n is independently, at each occurrence, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.

4. The compound of claim 1 wherein the compound is Formula I-W7:

I-W7

or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, or isomer thereof, wherein:

A is a 5- to 12-membered monocyclic or polycyclic heteroaryl;

Y1 is a direct bond;

Y2 is -NRa-; wherein the bond on the left side of Y2, as drawn, is bound to the pyrazine ring and the bond on the right side of the Y2 moiety, as drawn, is bound to R3;

R3 is combined with Ra to form a 3- to 12-membered monocyclic or polycyclic heterocycle or a 5- to 12-membered spiroheterocycle, wherein each heterocycle or spiroheterocycle is optionally substituted with one or more -Ci-C6alkyl, -OH, -NH2, heteroaryl, heterocyclyl, -(CH2)n H2, -COORb, -CO HRb, -CO H(CH2)nCOORb,

- HCOORb, -CF3, -CHF2, or -CH2F;

R1 is independently, at each occurrence, -H, -Ci-C6alkyl, -OH, halogen, -N02, -CN, - R5R6, -SR5, -C(0)R5, or -COzR5;

R2 is -Ci-Cealkyl;

Rb is independently, at each occurrence, -H or -Ci-C6alkyl;

R4 is -H, -Ci-Cealkyl, -Ci-Cehaloalkyl, -Ci-Cehydroxyalkyl, -CF2OH, -CHFOH, -C(0) H(CH2)nOH, -C(0) H(CH2)nRb, -C(0)Rb,-C(0) R5R6, -OH, or -CN, wherein alkyl is optionally substituted with one or more -OH, -NH2, halogen, or oxo; or

R5 and R6 are each independently, at each occurrence, -H or -Ci-C6alkyl; and n is independently, at each occurrence, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.

5. A compound of Formula I-Vl :

I- VI

or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, or thereof, wherein:

A is cycloalkyl, heterocycloalkyl, aryl, or heteroaryl, wherein cycloalkyl,

heterocycloalkyl, aryl, and heteroaryl are 5- to 12-membered monocyclic or 5- to 12 membered polycyclic;

Y1 is -S-, a direct bond, -NH-, -S(0)2- -S(0)2-NH- -C(=CH2) -, -CH-, or -S(O)-;

Y2 is -NRa-, wherein the bond on the left side of Y2, as drawn, is bound to the pyrazine ring and the bond on the right side of the Y2 moiety, as drawn, is bound to R3;

Ra and R4, together with the atom or atoms to which they are attached, are combined to form a monocyclic or polycyclic C3-Ci2cycloalkyl or a monocyclic or polycyclic 3- to 12- membered heterocycle, wherein the cycloalkyl or heterocycle is optionally substituted with oxo; wherein the heterocycle optionally comprises -S(0)2- in the heterocycle;

R1 is independently, at each occurrence, -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2-C6alkynyl, -C3-C8cycloalkyl, -OH, -OR6, halogen, -NO2, -CN, - R5R6, -SR5, -S(0)2 R5R6, -S(0)2R5, -NR5S(0)2 R5R6, - R5S(0)2R6, -S(0) R5R6, -S(0)R5, - R5S(0) R5R6, - R5S(0)R6, -C(0)R5 ,-C02R5, -C(0)NR5R6, - R5C(0)R6, monocyclic or polycyclic heterocyclyl, spiroheterocyclyl, heteroaryl, or oxo, wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, heterocyclyl, spiroheterocyclyl, or heteroaryl is optionally substituted with one or more -OH, -N02, oxo, =0, -CN, -R5, -OR5, - R5R6, -SR5, -S(0)2 R5R6, -S(0)2R5, - R5S(0)2 R5R6, - R5S(0)2R6, -S(0) R5R6, -S(0)R5, - R5S(0) R5R6, - R5S(0)R6, heterocycle, aryl, or heteroaryl;

R2 is independently - H2, -OH, -CN, -Ci-Cealkyl, -C2-C6alkenyl, -C4- Cscycloalkenyl, -C2-C6alkynyl, F, Br, I, -C3-C8cycloalkyl, aryl, heterocyclyl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O, or heteroaryl containing 1- 5 heteroatoms selected from the group consisting of N, S, P, and O; wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, heterocyclyl, or heteroaryl is optionally substituted with one or more -OH, halogen, -NO2, oxo, -CN, -R5, -OR5, -NR5R6, -SR5, -S(0)2NR5R6, -S(0)2R5, -NR5S(0)2NR5R6, -NR5S(0)2R6, -S(0)NR5R6, -S(0)R5, -NR5S(0)NR5R6, -NR5S(0)R6, heterocycle, aryl, or heteroaryl; and wherein the heterocyclyl or heteroaryl is not attached via a nitrogen atom;

Rb is independently, at each occurrence, -H, -D, -OH, -Ci-C6alkyl, -C3- C8cycloalkyl, -C2-C6alkenyl, -(CH2)n-aryl, heterocyclyl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O, or heteroaryl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O; wherein each alkyl, cycloalkyl, alkenyl, heterocycle, heteroaryl, or -(CH2)n-aryl is optionally substituted with one or more -OH, halogen, -NO2, oxo, -CN, -R5, -OR5, -NR5R6, -SR5, -S(0)2NR5R6, -S(0)2R5,

-NR5S(0)2NR5R6, -NR5S(0)2R6, -S(0)NR5R6, -S(0)R5, -NR5S(0)NR5R6, -NR5S(0)R6, -C(0)NR5R6, -NR5C(0)R6, heterocycle, aryl, heteroaryl, -(CH2)nOH, -Ci-Cealkyl, -CF3,

R3 is independently -H, -Ci-C6alkyl, a 3- to 12-membered monocyclic or polycyclic heterocycle, a 5- to 12-membered spiroheterocycle, C3-C8cycloalkyl, or -(CH2)n-Rb, wherein each alkyl, spiroheterocycle, heterocycle, or cycloalkyl is optionally substituted with one or more -Ci-Cealkyl, -OH, -NH2, -ORb, -NHRb, -(CH2)nOH, heterocyclyl, or

spiroheterocyclyl;

R5 is independently -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2- C6alkynyl, -C3-C8cycloalkyl, a monocyclic or polycyclic 3- to 12-membered heterocycle, -OR7, -SR7, -NR7R8, -NO2, -CF3, or -CN; R6 is independently -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2- C6alkynyl, -C3-C8cycloalkyl, a monocyclic or polycyclic 3- to 12-membered heterocycle, -OR7, -SR7, halogen, - R7R8, -NO2, -CF3, or -CN;

R7 and R8 are independently, at each occurrence, -H, -D, -Ci-C6alkyl,

-C2-C6alkenyl, -C4-C8cycloalkenyl, -C2-C6alkynyl, -C3-C8cycloalkyl, -ORb, or a monocyclic or polycyclic 3- to 12-membered heterocycle, wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, or heterocycle is optionally substituted with one or more -OH, -SH, - H2, -NO2, or -CN; and

n is independently, at each occurrence, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.

6. A compound of Formula I-V2:

I-V2 or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, and thereof, wherein:

A is cycloalkyl, heterocycloalkyl, aryl, or heteroaryl, wherein cycloalkyl, heterocycloalkyl, aryl, and heteroaryl are 5- to 12-membered monocyclic or 5- to 12- membered polycyclic;

Y1 is -S-, a direct bond, -NH-, -S(0)2- -S(0)2-NH- -C(=CH2) -, -CH-, or -S(O)-;

Y2 is -NRa-, wherein the bond on the left side of Y2, as drawn, is bound to the pyrazine ring and the bond on the right side of the Y2 moiety, as drawn, is bound to R3;

R3 is combined with Ra to form a 3- to 12-membered polycyclic heterocycle or a 5- to 12-membered spiroheterocycle, wherein each heterocycle or spiroheterocycle is optionally substituted with one or more -C i-Cealkyl, halogen, -OH, -ORb, -NH2, -NHRb, heteroaryl, heterocyclyl, -(CH2)nNH2, -(CH2)nOH, -COORb, -CONHRb, -CONH(CH2)nCOORb, -NHCOORb, -CF3, -CHF2, -CH2F, or =0;

R1 is independently, at each occurrence, -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2-C6alkynyl, -C3-C8cycloalkyl, -OH, -OR6, halogen, -NO2, -CN, -NR5R6, -SR5, -S(0)2NR5R6, -S(0)2R5, -NR5S(0)2NR5R6, -NR5S(0)2R6, -S(0)NR5R6, -S(0)R5, - R5S(0) R5R6, - R5S(0)R6, -C(0)R5 -CO2R5, -C(0)NR5R6, - R5C(0)R6, monocyclic or polycyclic heterocyclyl, spiroheterocyclyl, heteroaryl, or oxo, wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, heterocyclyl, spiroheterocyclyl, or heteroaryl is optionally substituted with one or more -OH, -NO2, oxo, =0, -CN, -R5, -OR5, - R5R6, -SR5, -S(0)2 R5R6, -S(0)2R5, - R5S(0)2 R5R6, - R5S(0)2R6, -S(0) R5R6, -S(0)R5, - R5S(0) R5R6, - R5S(0)R6, heterocycle, aryl, or heteroaryl;

R2 is independently - H2, -OH, -CN, -Ci-Cealkyl, -C2-C6alkenyl, -C4- Cscycloalkenyl, -C2-C6alkynyl, F, Br, I, -C3-C8cycloalkyl, aryl, heterocyclyl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O, or heteroaryl containing 1- 5 heteroatoms selected from the group consisting of N, S, P, and O; wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, heterocyclyl, or heteroaryl is optionally substituted with one or more -OH, halogen, -NO2, oxo, -CN, -R5, -OR5, -NR5R6, -SR5, -S(0)2NR5R6, -S(0)2R5, -NR5S(0)2NR5R6, -NR5S(0)2R6, -S(0)NR5R6, -S(0)R5, -NR5S(0)NR5R6, -NR5S(0)R6, heterocycle, aryl, or heteroaryl; and wherein the heterocyclyl or heteroaryl is not attached via a nitrogen atom;

Rb is independently, at each occurrence, -H, -D, -OH, -Ci-C6alkyl, -C3- C8cycloalkyl, -C2-C6alkenyl, -(CH2)n-aryl, heterocyclyl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O, or heteroaryl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O; wherein each alkyl, cycloalkyl, alkenyl, heterocycle, heteroaryl, or -(CH2)n-aryl is optionally substituted with one or more -OH, halogen, -NO2, oxo, -CN, -R5, -OR5, -NR5R6, -SR5, -S(0)2NR5R6, -S(0)2R5,

-NR5S(0)2NR5R6, -NR5S(0)2R6, -S(0)NR5R6, -S(0)R5, -NR5S(0)NR5R6, -NR5S(0)R6, -C(0)NR5R6, -NR5C(0)R6, heterocycle, aryl, heteroaryl, -(CH2)nOH, -Ci-Cealkyl, -CF3,

R4 is independently -H, -D, -Ci-C6alkyl, -Ci-C6haloalkyl, -Ci-C6hydroxyalkyl, -CF2OH, -CHFOH, -NH-NHR5, -NH-OR5, -0-NR5R6, -NHC(0)R5,

-NHC(0)NHR5, -NHS(0)2R5, -NHS(0)2NHR5, -S(0)2OH, -C(0)OR5, -NH(CH2)nOH, -C(0)NH(CH2)nOH, -C(0)NH(CH2)nRb, -C(0)Rb, -NH2, -OH, -CN, -C(0)NR5R6, -S(0)2NR5R6, C3-C8cycloalkyl, aryl, or heterocyclyl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O, wherein each alkyl, cycloalkyl, or heterocyclyl is optionally substituted with one or more -OH, -NH2, -ORb, halogen, or oxo; wherein each aryl is optionally substituted with one or more -OH, -NH2, or halogen;

500 R5 is independently -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2- C6alkynyl, -C3-C8cycloalkyl, a monocyclic or poly cyclic 3- to 12-membered heterocycle, -OR7, -SR7 - R7R8, -NO2, -CF3, or -CN;

R6 is independently -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2- C6alkynyl, -C3-C8cycloalkyl, a monocyclic or poly cyclic 3- to 12-membered heterocycle, -OR7, -SR7, halogen, - R7R8, -NO2, -CF3, or -CN;

R7 and R8 are independently, at each occurrence, -H, -D, -Ci-C6alkyl,

-C2-C6alkenyl, -C4-C8cycloalkenyl, -C2-C6alkynyl, -C3-C8cycloalkyl, -ORb, or a monocyclic or poly cyclic 3- to 12-membered heterocycle, wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, or heterocycle is optionally substituted with one or more -OH, -SH, -NH2, -NO2, or -CN; and

n is independently, at each occurrence, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.

7. The compound of claim 5 or 6, wherein R2 is -NH2.

8. The compound of any one of claims 1-2 and 5-7, wherein A is cycloalkyl.

9. The compound of any one of claims 1-2 and 5-7, wherein A is heterocycloalkyl.

10. The compound of any one of claims 1-2 and 5-7, wherein A is aryl.

11. The compound of any one of claims 1-2 and 5-7, wherein A is heteroaryl.

12. The compound of any one of claims 1-7, wherein A is pyridinyl.

13. The compound of any one of claims 1-12, wherein n is 1 or 2.

14. The compound of any one of claims 1-13, wherein R1 is independently, at each occurrence, -Ci-C6alkyl, halogen, or -NR5R6.

15. The compound of any one of claims 1-13, wherein R1 is independently selected from methyl, fluoro, chloro, and -NH2.

501

16. The compound of any one of claims 1-2 and 5-15, wherein Y1 is -S-.

17. The compound of any one of claims 1-2 and 5-15, wherein Y1 is a direct bond.

18. The compound of any of one of claims 1-6 and 8-17, wherein R2 is -OH.

19. The compound of claim 18, wherein Rb is -H.

20. The compound of claim 18, wherein Rb is -Ci-C6alkyl.

21. The compound of any of one of claims 1-6 and 8-17, wherein R2 is -CN.

22. The compound of any of one of claims 1-6 and 8-17, wherein R2 is -Ci-C6alkyl.

23. The compound of any of claim 22, wherein R2 is methyl.

24. The compound of any of one of claims 1-6 and 8-17, wherein R2 is -C2-C6alkenyl.

25. The compound of any of one of claims 1-6 and 8-17, wherein R2 is -C2-C6alkynyl.

26. The compound of any one of claims 1-4 and 6-25, wherein R4 is -Ci-C6alkyl, which is optionally substituted with one or more -OH, -NH2, halogen, or oxo.

27. The compound of claim 26, wherein R4 is -Ci-C6alkyl, which is substituted with -OH.

28. The compound of claim 26, wherein R4 is -CH2-OH.

29. The compound of any one of claims 1-4 and 6-25, wherein R4 is -H.

30. The compound of any one of claims 1-4 and 6-25, wherein R4 is -CN.

31. The compound of any one of claims 1-4 and 6-25, wherein R4 is -CF2OH or

-CHFOH.

502

32. The compound of any one of claims 1-2 and 7-31, wherein Y2 is - Ra-

33. The compound of any one of claims 1-2 and 7-31, wherein Y2 is -(CR¾)m-.

34. The compound of any one of claims 1-2, 5, and 7-33, wherein R3 is -Ci-C6alkyl, which is optionally substituted with one or more -Ci-C6alkyl, -OH, - H2, -ORb, - HRb, - (CH2)nOH, heterocyclyl, or spiroheterocyclyl.

35. The compound of any one of claims 1-34, wherein Ra is -H.

36. The compound of any one of claims 1-2, 5, 7-33, and 35, wherein R3 is 3- to 12- membered monocyclic or polycyclic heterocycle.

37. The compound of any one of claims 1-2, 5, 7-33, and 35, wherein R3 is a 3- to 12- membered monocyclic heterocycle.

38. The compound of any one of claims 1-2, 5-33, and 35, wherein R3 is a 3- to 12- membered polycyclic heterocycle.

39. The compound of any one of claims 1-4 and 7-33, wherein R3 and Ra together with the atom to which they are attached combine to form a 3- to 12-membered monocyclic heterocycle, which is optionally substituted with -Ci-C6alkyl, -OH, - H2, heteroaryl, heterocyclyl, -(CH2)n H2, -COORb, -CO HRb, -CO H(CH2)nCOORb, - HCOORb, -CF3,

40. The compound of any one of claims 1-4 and 6-33, wherein R3 and Ra together with the atoms to which they are attached combine to form a 3 - to 12-membered polycyclic heterocycle, which is optionally substituted with -Ci-C6alkyl, -OH, - H2, heteroaryl, heterocyclyl, -(CH2)n H2, -COORb, -CO HRb, -CO H(CH2)nCOORb, - HCOORb, -CF3,

503

41. The compound of any one of claims 1-4 and 6-33, wherein R and Ra together with the atoms to which they are attached combine to form a 5- to 12-membered spiroheterocycle, which is optionally substituted with -Ci-C6alkyl, -OH, - H2, heteroaryl, heterocyclyl,

-(CH2)n H2, -COORb, -CO HRb, -CO H(CH2)nCOORb, - HCOORb, -CF3, -CHF2, or

-CHzF.

42. The compound of claim 41, wherein R3 and Ra together with the atoms to which they are attached combine to form a 10- to 12-membered spiroheterocycle, which is optionally substituted with -Ci-Cealkyl, -OH, - H2, heteroaryl, heterocyclyl, -(CH2)n H2, -COORb, -CO HRb, -CO H(CH2)nCOORb, - HCOORb, -CF3, -CHF2, or -CH2F.

43. The compound of any of claims 1-2, 7-25, 32-34, and 36-38, wherein Ra and R4 together with the atom to which they are attached combine to form a monocyclic or poly cyclic 3- to 12-membered cycloalkyl.

44. The compound of any of claims 1-2, 7-25, 32-34, and 36-38, wherein Ra and R4 together with the atom to which they are attached combine to form a monocyclic or polycyclic 3- to 12-membered heterocycle.

45. A compound, or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, or isomer thereof, selected from the group consisting of:

3 4

504

505

506

46. A compound, or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, or isomer thereof, selected from the group consisting of:

507

508

509

510

511

A-24

A-25

A-26

A-27

512

513 A-32

A-33

A-34

A-35

A-36

514

515 A-42

A-43

A-44

A-45

A-46

516

517

518

519

520

521

522

523 A-81

A-82

A-83

A-84

A-85

524

525

526

527

528

529

530

531 A-119

A- 120

A-121

A- 122

532

533

534

535

536

47. A compound, or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, or isomer thereof, selected from the group consisting of:

537

538

539

540

541

542

545

546

547

548

549

550

551

552

553

554

555

556

557

558

559

560

561

562

563

564

565 ; and

48. A compound of Formula I-W:

I-W

or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, or isomer thereof, wherein:

A is cycloalkyl, heterocycloalkyl, aryl, or heteroaryl, wherein cycloalkyl, heterocycloalkyl, aryl, and heteroaryl are 5- to 12-membered monocyclic or 5- to 12- membered polycyclic;

Y1 is -S-, a direct bond, -NH-, -S(0)2- -S(0)2- H- -C(=CH2) -, -CH-, or -S(O)-;

Y2 is - Ra- -(CR¾)m- -C(O)-, -C(Ra)2 H-, -(CRa2)mO-, -C(0)N(Ra)-, -N(Ra)C(0)-, -S(0)2N(Ra)-, -N(Ra)S(0)2-, -N(Ra)C(0)N(Ra)-, -N(Ra)C(S)N(Ra)-, -C(0)0-, -OC(O)-, -OC(0)N(Ra)-, -N(Ra)C(0)0-, -C(0)N(Ra)0- -N(Ra)C(S)-, -C(S)N(Ra)-, or -OC(0)0-; wherein the bond on the left side of Y2, as drawn, is bound to the pyrazine ring and the bond on the right side of the Y2 moiety, as drawn, is bound to R3;

566 R1 is independently, at each occurrence, -H, -D, -Ci-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -Ci-Cealkynyl, -C3-C8cycloalkyl, -OH, -OR6, halogen, -NO2, -CN, - R5R6, -SR5, -S(0)2 R5R6, -S(0)2R5, -NR5S(0)2 R5R6, - R5S(0)2R6, -S(0) R5R6, -S(0)R5, - R5S(0) R5R6, - R5S(0)R6, -C(0)R5,-C02R5, -C(0)NR5R6, - R5C(0)R6, monocyclic or polycyclic heterocyclyl, spiroheterocyclyl, heteroaryl, or oxo, wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, heterocyclyl, spiroheterocyclyl, or heteroaryl is optionally substituted with one or more -OH, halogen, -NO2, oxo, =0, -CN, -R5, -OR5, -NR5R6, -SR5, -S(0)2NR5R6, -S(0)2R5, -NR5S(0)2NR5R6, -NR5S(0)2R6, -S(0)NR5R6, -S(0)R5, -NR5S(0)NR5R6, -NR5S(0)R6, heterocycle, aryl, or heteroaryl;

R2 is independently -OH, -CN, -C i-C6alkyl, -C2-C6alkenyl, -C4-C8cycloalkenyl, -C2-C6alkynyl, F, Br, I, -C(0)ORb, -C3-C8cycloalkyl, aryl, heterocyclyl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O, or heteroaryl containing 1- 5 heteroatoms selected from the group consisting of N, S, P, and O; wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, heterocyclyl, or heteroaryl is optionally substituted with one or more -OH, halogen, -NO2, oxo, -CN, -R5, -OR5, -NR5R6, -SR5, -S(0)2NR5R6, -S(0)2R5, -NR5S(0)2NR5R6, -NR5S(0)2R6, -S(0)NR5R6, -S(0)R5, -NR5S(0)NR5R6, -NR5S(0)R6, heterocycle, aryl, or heteroaryl; and wherein the heterocyclyl or heteroaryl is not attached via a nitrogen atom;

Ra is independently, at each occurrence, -H, -D, -OH, -C3-C8cycloalkyl, -Ci- C6alkyl, 3- to 12-membered heterocyclyl, or -(CH2)n-aryl, wherein each alkyl or cycloalkyl is optionally substituted with one or more -NH2, or wherein 2 Ra, together with the carbon atom to which they are both attached, can combine to form a 3- to 8-membered cycloalkyl;

Rb is independently, at each occurrence, -H, -D, -OH, -Ci-C6alkyl, -C3- C8cycloalkyl, -C2-C6alkenyl, -(CH2)n-aryl, heterocyclyl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O, or heteroaryl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O; wherein each alkyl, cycloalkyl, alkenyl, heterocycle, heteroaryl, or -(CH2)n-aryl is optionally substituted with one or more -OH, halogen, -NO2, oxo, -CN, -R5, -OR5, -NR5R6, -SR5, -S(0)2NR5R6, -S(0)2R5, - NR5S(0)2NR5R6, -NR5S(0)2R6, -S(0)NR5R6, -S(0)R5, -NR5S(0)NR5R6, -NR5S(0)R6, -C(0)NR5R6, -NR5C(0)R6, heterocycle, aryl, heteroaryl, -(CH2)nOH, -C i-Cealkyl, -CF3,

R3 is combined with Ra to form a 3- to 12-membered polycyclic heterocycle or a 5- to 12-membered spiroheterocycle, wherein each heterocycle or spiroheterocycle is optionally

567 substituted with one or more -Ci-Cealkyl, halogen, -OH, -ORb, - H2, - HRb, heteroaryl, heterocyclyl, -(CH2)n H2, -(CH2)nOH, -COORb, -CO HRb, -CO H(CH2)nCOORb, - HCOORb, -CF3, -CHF2, -CH2F, or =0;

R4 is independently -H, -D, -Ci-C6alkyl, -Ci-C6haloalkyl, -Ci-C6hydroxyalkyl, -CF2OH, -CHFOH, - H- HR5, - H-OR5, -0- R5R6, - HC(0)R5, - HC(0) HR5, - HS(0)2R5, - HS(0)2 HR5, -S(0)2OH, -C(0)OR5, - H(CH2)nOH, -C(0) H(CH2)nOH, -C(0) H(CH2)nRb, -C(0)Rb, - H2, -OH, -CN, -C(0) R5R6, -S(0)2 R5R6, C3- Cscycloalkyl, aryl, heterocyclyl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O, or heteroaryl containing 1-5 heteroatoms selected from the group consisting of N, S, P, and O, wherein each alkyl, cycloalkyl, or heterocyclyl is optionally substituted with one or more -OH, -NH2, -ORb, halogen, or oxo; wherein each aryl or heteroaryl is optionally substituted with one or more -OH, - H2, or halogen; or

Ra and R4, together with the atom or atoms to which they are attached, can combine to form a monocyclic or poly cyclic C3-Ci2cycloalkyl or a monocyclic or poly cyclic 3- to 12- membered heterocycle, wherein the cycloalkyl or heterocycle is optionally substituted with oxo; wherein the heterocycle optionally comprises -S(0)2- in the heterocycle;

R5 and R6 are independently, at each occurrence, -H, -D, -Ci-C6alkyl,

-C2-C6alkenyl, -C4-C8cycloalkenyl, -C2-C6alkynyl, -C3-C8cycloalkyl, a monocyclic or poly cyclic 3- to 12-membered heterocycle, -OR7, -SR7, halogen, - R7R8, -N02, -CF3, or -CN;

R7 and R8 are independently, at each occurrence, -H, -D, -Ci-C6alkyl,

-C2-C6alkenyl, -C4-C8cycloalkenyl, -C2-C6alkynyl, -C3-C8cycloalkyl, -ORb, or a

monocyclic or poly cyclic 3- to 12-membered heterocycle, wherein each alkyl, alkenyl, cycloalkenyl, alkynyl, cycloalkyl, or heterocycle is optionally substituted with one or more -OH, -SH, -NH2, -NO2, or -CN;

m is independently, at each occurrence, 1, 2, 3, 4, 5 or 6; and

n is independently, at each occurrence, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.

49. A pharmaceutical composition comprising a compound of any one of claims 1-48, or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, or isomer thereof, and a pharmaceutically acceptable carrier.

568

50. A method of treating a disease associated with SHP2 modulation in a subject in need thereof, comprising administering to the subject an effective amount of a compound of any one of claims 1-48, or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, or isomer thereof.

51. The method of claim 50, wherein the disease is selected from Noonan Syndrome, Leopard Syndrome, juvenile myelomonocytic leukemias, neuroblastoma, melanoma, acute myeloid leukemia and cancers of the breast, lung and colon.

52. A compound of any one of claims 1-48, or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, or isomer thereof, for use as a medicament.

53. A compound of any one of claims 1-48, or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, or isomer thereof, for use in treating or preventing a disease associated with SHP2 modulation.

54. Use of a compound of any one of claims 1-48, or a pharmaceutically acceptable salt, prodrug, solvate, hydrate, tautomer, or isomer thereof, in the manufacture of a medicament for treating or preventing a disease associated with SHP2 modulation.

55. A method of treating a disease associated with SHP2 modulation in a subject in need thereof, comprising administering to the subject an effective amount of a pharmaceutical composition of claim 49.

56. The method of claim 55, wherein the disease is selected from Noonan Syndrome, Leopard Syndrome, juvenile myelomonocytic leukemias, neuroblastoma, melanoma, acute myeloid leukemia and cancers of the breast, lung and colon.

57. A pharmaceutical composition of claim 49 for use as a medicament.

58. A pharmaceutical composition of claim 49 for use in treating or preventing a disease associated with SHP2 modulation.

569

58. Use of a pharmaceutical composition of claim 49 in the manufacture of a medicament for treating or preventing a disease associated with SHP2 modulation.

570