Login| Sign Up| Help| Contact|

Patent Searching and Data


Title:
GENE Dro1 CONTROLLING DEEP-ROOTED CHARACTERISTICS OF PLANT AND UTILIZATION OF SAME
Document Type and Number:
WIPO Patent Application WO/2011/078308
Kind Code:
A1
Abstract:
Disclosed are a gene which controls the deep-rooted characteristics of a plant, a transgenic plant having said gene transferred thereinto, a method for controlling the deep-rooted characteristics of a plant with the use of said gene, etc. A genetic locus (Dro1 genetic locus) capable of controlling the deep-rooted characteristics of a plant, which was detected between a shallow-rooted rice cultivar IR64 and a deep-rooted rice cultivar Kinandang Patong in a large-scaled segregation population, was examined by high-accurate linkage analysis. As a result, it was clarified that the gene region of Dro1 resides in a 6.0 kbp region located between Dro1-INDEL09, which is an InDel marker, and Dro1-CAPS05, which is a CAPS marker. It was also confirmed that a transgenic plant transformed by the Kinandang Patong type Dro1 gene shows deep-rooted characteristics at a significantly high ratio. It was also confirmed that an individual having the Kinandang Patong type Dro1 gene is resistant to drought.

Inventors:
UGA YUSAKU (JP)
Application Number:
PCT/JP2010/073288
Publication Date:
June 30, 2011
Filing Date:
December 24, 2010
Export Citation:
Click for automatic bibliography generation   Help
Assignee:
NAT INST OF AGROBIO SCIENCES (JP)
UGA YUSAKU (JP)
International Classes:
C12N15/09; A01H5/00; A23L7/10; C07K14/415; C07K16/16; C12N5/10; C12Q1/68
Domestic Patent References:
WO2006123392A12006-11-23
WO2001032881A12001-05-10
Foreign References:
JP2005185101A2005-07-14
JP2002153283A2002-05-28
JP2003339382A2003-12-02
JP2004089036A2004-03-25
JP2004290190A2004-10-21
JP2005110579A2005-04-28
JP2007222129A2007-09-06
JP2649287B21997-09-03
Other References:
"The Rice Annotation Project, Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana", GENOME RES., vol. 17, no. 2, February 2007 (2007-02-01), pages 175 - 183
YUSAKU UGA: "Seiri Keitai Keishitsu ni Kan'yo suru Idenshi no Kaiseki", KENKYU SEIKA DAI 473 SHU 'GENOME IKUSHU NI YORU KORITSUTEKI HINSHU IKUSEI GIJUTSU NO KAIHATSU -QTL IDENSHI KAISEKI NO SUISHIN-'
OMORI F. ET AL: "QTL mapping of root angle in F2 populations from maize 'B73 x teosinte 'Zea luxurians'", PLANT ROOT., vol. 1, 2007, pages 57 - 65, XP008161283
KATO Y. ET AL: "Genotypic variation in root growth angle in rice(Oryza sativa L.) and its association with deep root development in upland fields with different water regimes", PLANT SOIL, vol. 287, 2006, pages 117 - 129, XP019437172
SHEN L. ET AL: "Evaluation of near-isogenic lines of rice introgressed with QTLs for root depth through marker-aided selection", THEOR.APPL.GENET., vol. 103, 2001, pages 75 - 83
See also references of EP 2518148A4
SHIGENORI MORITA, NE NO DEZAIN (ROOT DESIGN, 2003, pages 107
YOSHIDA; HASEGAWA, DROUGHT RESISTANCE IN CROPS WITH EMPHASIS ON RICE, 1982, pages 97 - 114
SHIGENORI MORITA, NE NO HATSUIKUGAKU, 2000, pages 132
TRAN ET AL., METHODS IN ENZYMOLOGY, vol. 428, 2007, pages 109 - 28
HIDEO HIRASAWA, BREEDING SCIENCE, vol. 48, 1998, pages 415 - 419
MORITA; TASAKA, CURRENT OPINION IN PLANT BIOLOGY, vol. 7, no. 6, 2004, pages 712 - 718
KOBAYASHI ET AL., PROC. NATL. ACAD. SCI. USA, vol. 104, no. 11, 2007, pages 4724 - 4729
MIYAZAWA ET AL., PLANT PHYSIOLOGY, vol. 149, no. 2, 2009, pages 835 - 840
HAGA ET AL., PLANT CELL, vol. 17, no. 1, 2005, pages 103 - 115
INUKAI ET AL., PLANT CELL, vol. 17, no. 5, 2005, pages 1387 - 1396
TUBEROSA ET AL., PLANT MOLECULAR BIOLOGY, vol. 48, 2002, pages 697 - 712
TRACHSEL ET AL., THEORETICAL AND APPLIED GENETICS, 2009
UGA TRACHSEL ET AL., BREEDING SCIENCE, vol. 59, 2009, pages 87 - 93
PRICE ET AL., JOURNAL OF EXPERIMENTAL BOTANY, vol. 53, 2002, pages 989 - 1004
COURTOIS ET AL., EUPHYTICA, vol. 134, 2003, pages 335 - 345
ZHENG ET AL., THEORETICAL AND APPLIED GENETICS, vol. 107, 2003, pages 1505 - 1515
LI ET AL., THEORETICAL AND APPLIED GENETICS, vol. 110, 2005, pages 1244 - 1252
OMORI F.; MANO Y., PLANT ROOT, vol. 1, 2007, pages 57 - 65
YADAN ET AL., THEORETICAL AND APPLIED GENETICS, vol. 95, 1997, pages 619 - 632
NEMOTO ET AL., BREEDING SCIENCE, vol. 48, 1998, pages 321 - 324
MASAKATA HIRAYAMA ET AL., NIHON SAKUMOTSU GAKKAI KIJI, vol. 76, 2007, pages 245 - 252
OYANAGI ET AL., NIHON SAKUMOTSU GAKKAI KIJI, vol. 62, 1993, pages 565 - 570
KATO ET AL., PLANT SOIL, vol. 287, 2006, pages 117 - 129
UGA ET AL., THE 2ND INTERNATIONAL CONFERENCE ON PLANT MOLECULAR BREEDING, 2007
UGA ET AL., NIHON IKUSYU GAKKAI DAI 112 KAI KOUENKAI YOUSHISYU, 2007, pages 188
UGA ET AL., DAI 27 KAI NE KENKYU SYUKAI, 2007
UGA, THE 5TH INTERNATIONAL CROP SCIENCE CONGRESS ABSTRACTS, 2008, pages 243
HIEI; KOMARI, NATURE PROTOCOLS, vol. 3, 2008, pages 824 - 834
MORITA S.: "Ne no Dezain", 2003, YOKENDO, pages: 107
YOSHIDA S.; HASEGAWA S.: "Drought resistance in crops with emphasis on rice", 1982, INTERNATIONAL RICE RESEARCH INSTITUTE, article "The rice root system: its development and function", pages: 97 - 114
MORITA S.: "Ne no Hatsuikugaku", 2000, UNIVERSITY OF TOKYO PRESS, pages: 132
TRAN L. S.; NAKASHIMA K.; SHINOZAKI K.; YAMAGUCHI-SHINOZAKI K.: "Plant gene networks in osmotic stress response: from genes to regulatory networks", METHODS IN ENZYMOLOGY, vol. 428, 2007, pages 109 - 28
HIDEO HIRASAWA; HIROSHI NEMOTO; TATSUO SUGA; MASATOSHI ISHIHARA; MASAKATA HIRAYAMA; KAZUYUKI OKAMOTO; MASARU MIYAMOTO: "Development of''Yumenohatamochi'', a highly drought resistant upland rice variety with excellent eating quality", BREEDING SCIENCE, vol. 48, 1998, pages 415 - 419
MORITA M. T.; TASAKA M.: "Gravity sensing and signaling", CURRENT OPINION IN PLANT BIOLOGY, vol. 7, no. 6, 2004, pages 712 - 718, XP004604446, DOI: doi:10.1016/j.pbi.2004.09.001
HAGA K.; TAKANO M.; NEUMANN R.; LINO M.: "The Rice COLEOPTILE PHOTOTROPISM1 gene encoding an ortholog ofArabidopsis NPH3 is required for phototropism of coleoptiles and lateral translocation of auxin", PLANT CELL, vol. 17, no. 1, 2005, pages 103 - 115
KOBAYASHI A.; TAKAHASHI A.; KAKIMOTO Y.; MIYAZAWA Y.; FUJII N.; HIGASHITANI A.; TAKAHASHI H.: "A gene essential for hydrotropism in roots", PROC. NATL. ACAD. SCI. USA, vol. 104, no. 11, 2007, pages 4724 - 4729
MIYAZAWA Y.; TAKAHASHI A.; KOBAYASHI A.; KANEYASU T.; FUJII N.; TAKAHASHI H.: "GNOM-mediated vesicular trafficking plays an essential role in hydrotropism of Arabidopsis roots", PLANT PHYSIOLOGY, vol. 149, no. 2, 2009, pages 835 - 840
INUKAI Y.; SAKAMOTO T.; UEGUCHI-TANAKA M.; SHIBATAY; GOMI K.; UMEMURA I.; HASEGAWA Y.; ASHIKARI M.; KITANO H.; MATSUOKA M.: "Crown rootlessl, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling", PLANT CELL, vol. 17, no. 5, 2005, pages 1387 - 1396
TUBEROSA R.; SANGUINETI M. C.; LANDI P.; GIULIANI M. M.; SALVI S.; CONTI S.: "Identification of QTLs for root characteristics in maize grown in hydroponics and analysis of their overlap with QTLs for grain yield in the field at two water regimes", PLANT MOLECULAR BIOLOGY, vol. 48, 2002, pages 697 - 712
TRACHSEL S.; MESSMER R.; STAMP P.; HUNDA.: "Mapping of QTLs for lateral and axile root growth of tropical maize", THEORETICAL AND APPLIED GENETICS, 2009
UGA Y; EBANA K.; ABE J.; MORITA S.; OKUNO K.; YANO M.: "Variation in root morphology and anatomy among accessions of cultivated rice (Oryza sativa L.) with different genetic backgrounds", BREEDING SCIENCE, vol. 59, 2009, pages 87 - 93, XP002712758, DOI: doi:10.1270/jsbbs.59.87
PRICE A. H.; CAIRNS J. E.; HORTON P.; JONES H. G.; GRIFFITHS H.: "Linking drought-resistance mechanisms to drought avoidance in upland rice using a QTL approach: progress and new opportunities to integrate stomatal and mesophyll responses", JOURNAL OF EXPERIMENTAL BOTANY, vol. 53, 2002, pages 989 - 1004
COURTOIS B.; SHEN L.; PETALCORIN W.; CARANDANG S.; MAULEON R.; LI Z.: "Locating QTLs controlling constitutive root traits in the rice population IAC 165 x Co39", EUPHYTICA, vol. 134, 2003, pages 335 - 345
ZHENG B. S.; YANG L.; ZHANG W. P.; MAO C. Z.; WU Y. R.; YI K. K.; LIU F. Y; WU P.: "Mapping QTLs and candidate genes for rice root traits under different water-supply conditions and comparative analysis across three populations", THEORETICAL AND APPLIED GENETICS, vol. 107, 2003, pages 1505 - 1515
LI Z.; MUP.; LI C.; ZHANG H.; LI Z.; GAO Y.; WANG X.: "QTL mapping of root traits in a doubled haploid population from a cross between upland and lowland japonica rice in three environments", THEORETICAL AND APPLIED GENETICS, vol. 110, 2005, pages 1244 - 1252, XP019321905, DOI: doi:10.1007/s00122-005-1958-z
OMORI F.; MANO Y.: "QTL mapping of root angle in F2 populations from maize 'B73' x teosinte 'Zea luxurians", PLANT ROOT, vol. 1, 2007, pages 57 - 65, XP008161283
YADAV R.; COURTOIS B.; HUANG N.; MCLAREN G.: "Mapping genes controlling root morphology and root distribution in a doubled-haploid population of rice", THEORETICAL AND APPLIED GENETICS, vol. 95, 1997, pages 619 - 632
NEMOTO, H.; SUGA, R.; ISHIHARA M.; OKUTSU Y.: "Deep rooted rice varieties detected through the observation of root characteristics using the trench method", BREEDING SCIENCE, vol. 48, 1998, pages 321 - 324, XP002990928
MASAKATA HIRAYAMA; HIROSHI NEMOTO; HIDEO HIRASAWA: "Hojosaibaisita Nakate Okute Jukuki Nippon Rikutou Hinshu no Konkei Hattatsu Teido to Taikansei tono Kankei (Relation between the degree of root system development and drought resistance in field-cultivated medium maturing and late maturing Japanese upland rice varieties", NIHON SAKUMOTSU GAKKAI KIJI, vol. 76, 2007, pages 245 - 252
OYANAGI A.; NAKAMOTO T.; WADA M.: "Relationship between root growth angle of seedlings and vertical distribution of roots in the field in wheat cultivars", NIHON SAKUMOTSU GAKKAI KIJI, vol. 62, 1993, pages 565 - 570
KATO Y.; ABE J.; KAMOSHITA A.; YAMAGISHI J.: "Genotypic variation in root growth angle rice (Oryza sativa L.) and its association with deep root development in upland fields with different water regimes", PLANT SOIL, vol. 287, 2006, pages 117 - 129, XP019437172, DOI: doi:10.1007/s11104-006-9008-4
UGA Y.; K. OKUNO; M. YANO: "Relationship between QTLs for vascular system and vertical distribution of roots on chromosome 9 of rice.", THE 2ND INTERNATIONAL CONFERENCE ON PLANT MOLECULAR BREEDING, 2007
YUSAKU UGA; KAZUTOSHI OKUNO; MASAHIRO YANO: "Ine Dai 9 Sensyokutai jyouni Miidasareta Shinkonsei nikansuru QTL (QTL involved in the deep rooting, found on rice chromosome 9", NIHON IKUSYU GAKKAI DAI 112 KAI KOUENKAI YOUSHISYU, 2007, pages 188
YUSAKU UGA; KAZUTOSHI OKUNO; MASAHIRO YANO: "Ine Shinkonsei kanren Idenshiza Dro2 no Fain Mappingu (Fine mapping of rice deep rooting-related locus Drol", DAI 27 KAI NE KENKYU SYUKAI, 2007
UGA Y; K. OKUNO; M. YANO: "Fine mapping of a deeper-rooting QTL, Drol, on chromosome 9 in rice", THE 5TH INTERNATIONAL CROP SCIENCE CONGRESS ABSTRACTS, 2008, pages 243
HIEI Y.; KOMARI T: "Agrobacterium-mediated transformation of rice using immature embryos or calli induced from mature seed", NATURE PROTOCOLS, vol. 3, 2008, pages 824 - 834
YANO M., 2ND INTERNATIONAL SYMPOSIUM ON GENOMICS OF PLANT GENETIC RESOURCES, 24 April 2010 (2010-04-24)
YANO M.: "Gatersleben Lecture", 29 April 2010, INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH
YANO M., THIRD INTERNATIONAL CONFERENCE OF PLANT MOLECULAR BREEDING, 7 September 2010 (2010-09-07)
YUSAKU UGA: "Ikusyugaku Kenkyu Dai 12 Gou Bessatsu 2 Gou", 24 September 2010, pages: 21
YUSAKU UGA: "niokem Teiki Semina", 29 October 2010, CIAT
KRAMER, W.; FRITZ, H.-J.: "Oligonucleotide-directed construction of mutagenesis via gapped duplex DNA", METHODS IN ENZYMOLOGY, vol. 154, 1987, pages 350 - 367
SOUTHERN, E. M., JOURNAL OF MOLECULAR BIOLOGY, vol. 98, 1975, pages 503
SAIKI, R. K. ET AL., SCIENCE, vol. 230, 1985, pages 1350 - 1354
SAIKI, R. K. ET AL., SCIENCE, vol. 239, 1988, pages 487 - 491
KARIN; ALTSCHUL, PROC. NATL. ACAD. SCI. USA, vol. 87, 1990, pages 2264 - 2268
PROC NATL ACAD SCI USA, vol. 90, 1993, pages 5873
ALTSCHUL SF ET AL., J MOL BIOL, vol. 215, 1990, pages 403
MANDEL, M. & HIGA, A., JOURNAL OF MOLECULAR BIOLOGY, vol. 53, 1970, pages 158 - 162
HANAHAN, D., JOURNAL OF MOLECULAR BIOLOGY, vol. 166, 1983, pages 557 - 580
WARD ET AL., NATURE, vol. 341, 1989, pages 544 - 546
FASEB J., vol. 6, 1992, pages 2422 - 2427
BETTER ET AL., SCIENCE, vol. 240, 1988, pages 1041 - 1043
LEI, S. P. ET AL., J. BACTERIOL., vol. 169, 1987, pages 4379
NUCLEIC ACIDS RES., vol. 18, no. 17, 1990, pages 5322
MULLIGAN ET AL., NATURE, vol. 277, 1979, pages 108
MIZUSHIMA ET AL., NUCLEIC ACIDS RES., vol. 18, 1990, pages 5322
VALLE ET AL., NATURE, vol. 291, 1981, pages 358 - 340
PROC. NATL. ACAD. SCI. USA, vol. 77, 1980, pages 4216 - 4220
PROC. NATL. ACAD. SCI. USA, vol. 60, 1968, pages 1275
NAGEL, R. ET AL., FEMS MICROBIOL. LETT., vol. 67, 1990, pages 325 - 328
FUJIMURA ET AL., TISSUE CULTURE LETT., vol. 2, 1995, pages 74
HARRIS, R. ET AL., PLANT CELL REPORTS, vol. 7, 1988, pages 337 - 340
OZGEN, M. ET AL., PLANT CELL REPORTS, vol. 18, 1998, pages 331 - 335
KIHARA, M.; FUNATSUKI, H., BREEDING SCI., vol. 44, 1994, pages 157 - 160
LURS, R.; LORZ, H., THEOR. APPL. GENET., vol. 75, 1987, pages 16 - 25
SHILLITO, R.D. ET AL., BIO/TECHNOLOGY, vol. 7, 1989, pages 581 - 587
GORDON-KAMM, W.J. ET AL., PLANT CELL, vol. 2, no. 7, 1990, pages 603 - 618
WEN, F.S. ET AL., EUPHYTICA., vol. 52, 1991, pages 177 - 181
HAGIO, T., BREEDING SCI., vol. 44, 1994, pages 121 - 126
CASTILLO A. M.; VASIL V; VASIL I. K., NATURE BIOTECHNOLOGY, vol. 12, 1994, pages 1366 - 1371
CHO M. J.; WEN J.; LEMAUX P. G., PLANT SCIENCE, vol. 148, 1999, pages 9 - 17
O'KENNEDY M. M.; BURGER J. T.; BOTHA F. C., PLANT CELL REPORTS, vol. 22, 2004, pages 684 - 690
HA C. D., LEMAUX P. G.; CHO M. J., IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT, vol. 37, 2001, pages 6 - 11
CHO M.J.; CHOI H. W.; LEMAUX P. G, PLANT CELL REPORTS, vol. 20, 2001, pages 318 - 324
YE X.; WANG Z. Y.; WU X.; POTRYKUS I.; SPANGENBERG G., PLANT CELL REPORTS, vol. 16, 1997, pages 379 - 384
SPANGENBERG G.; WANG Z. Y.; WU X.; NAGEL J.; POTRYKUS I., PLANT SCIENCE, vol. 108, 1995, pages 209 - 217
WANG Z. Y.; TAKAMIZO T.; IGLESIAS V. A.; OSUSKY M.; NAGEL J.; POTRYKUS I.; SPANGENBERG G, NATURE BIOTECHNOLOGY, vol. 10, 1992, pages 691 - 696
SMITH R. L.; GRANDO M. F.; LI Y. Y.; SEIB J. C.; SHATTERS R. G, PLANT CELL REPORTS, vol. 20, 2002, pages 1017 - 1021
J. SAMBROOK ET AL.: "Molecular Cloning,the 2nd edition,", 1989, COLD SPRING HARBOR LABORATORY PRESS
LAEMMLI, NATURE, vol. 227, 1970, pages 680 - 685
TAKAI ET AL., FIELD CROPS RESEARCH, 2009
HIRAYAMA ET AL., BREEDING SCIENCE, vol. 56, 2006, pages 47 - 54
UGA ET AL., THE 5TH INTERNATIONAL CROP SCIENCE CONGRESS ABSTRACTS, 2008, pages 243
INTERNATIONAL RICE GENOME SEQUENCING PROJECT, 2005
FUSE ET AL., PLANT BIOTECHNOLOGY, vol. 18, 2001, pages 219 - 222
"Plant Biotechnology Institute, Ibaraki Agricultural Center", 1995, article "Hirayama and Suga, Nougyo Kenkyu Senta Kenkyu Shiryo Dai 30 Gou, Ine Ikusyu Manyuaru", pages: 152 - 155
Attorney, Agent or Firm:
SHIMIZU, Hatsushi et al. (JP)
Spring water Original aim (JP)
Download PDF: