GENERATING CONFIGURABLE TEXT STRINGS BASED ON RAW GENOMIC DATA

Title:

GENERATING CONFIGURABLE TEXT STRINGS BASED ON RAW GENOMIC DATA

Document Type and Number:

WIPO Patent Application WO/2019/139994

Kind Code:

A1

Abstract:

A genomic data translation system can be configured to process next-generation sequencing information. The system can receive an output file including raw genome data. The system can parse the output file to determine segments corresponding to individual chromosomes. The system can identify ranges of nucleotides and determine the first set of genes included in a human reference genome listing that fall within the ranges. The system can also maintain a gene list of genes, and determine a matched set of genes that are included in the gene list and the first set of genes. The system can generate a configurable text string including non-configurable regions and configurable regions. The configurable regions can be populated with text based on the raw genomic data, a set of translation rules, and a set of translation text strings.

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Inventors:

ZEHIR AHMET (US)
ZIEGLER JOHN SCOTT (US)

Application Number:

PCT/US2019/012913

Publication Date:

July 18, 2019

Filing Date:

January 09, 2019

Export Citation:

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Assignee:

MEMORIAL SLOAN KETTERING CANCER CENTER (US)

International Classes:

G16B30/10; C12Q1/68; G16B40/20

Domestic Patent References:

WO2016139534A2	2016-09-09
WO2017220508A1	2017-12-28

Foreign References:

US20140274731A1

2014-09-18

Other References: