1. A diagnostic panel comprising a test for detecting at least one biomarker that indicates the presence of a virus.

2. The diagnostic panel of claim 1, wherein said at least one biomarker is a metabolite chosen from the group consisting of 1,3-dimethylurate, levoglucosan, 1-methylnicotinamide, metabolite 1, 2- hydroxyisobutyrate, 2-oxoglutarate, 3-aminoisobutyrate, 3-hydroxybutyrate, 3-hydroxyisovalerate, 3- indoxylsulfate, 4-hydroxyphenylacetate, 4-hydroxyphenyllactate, 4-pyridoxate, acetate, acetoacetate, acetone, adipate, alanine, allantoin, asparagine, betaine, carnitine, citrate, creatine, creatinine, dimethylamine, ethanolamine, formate, fucose, fumarate, glucose, glutamine, glycine, metabolite 2, metabolite 3, hippurate, histidine, hypoxanthine, isoleucine, lactate, leucine, lysine, mannitol, metabolite 4, metabolite 5, metabolite 6, Ν,Ν-dimethylglycine, O-acetylcarnitine, pantothenate, propylene glycol, pyroglutamate, pyruvate, quinolinate, serine, succinate, sucrose, metabolite 7, taurine, threonine, trigonelline, trimethylamine-N-oxide, tryptophan, tyrosine, uracil, urea, valine, xylose, cis-aconitate, myo-inositol, trans-aconitate, 1-methylhistidine, 3-methylhistidine, ascorbate, phenylacetylglutamine, 4-hydroxyproline, gluconate, galactose, galactitol, galactonate, lactose, phenylalanine, proline betaine, trimethylamine, butyrate, propionate, isopropanol, mannose, 3- methylxanthine, ethanol, benzoate, glutamate, glycerol, guanosine, guanine, xanthine, uric acid, adenosine, inosine, inosinic acid, C0₂, H₂0, N-carboamoyl- -alanine, beta-alanine, ammonia, β- aminoisobutyrate, putrescine, spermidine, spermine, methionine, S-adenosylmethionine, decarboxylated S-adenosylmethionine, arginine, ornithine, putrescine, Nl-acetylspermidine, Nl- acetylspermine, elF5A(Lys), elF5A(Dhp), elF5A(Hpu), NlN2-diacetylspermine, 3-aminopropanal, 3- acetylaminopropanal, acrolein, FDP-lysine protein, threo-Ds-isocitrate, oxalo-succinate, 2-oxo-glutarate, oxalo-acetate, L-glutamate, 2-hydroxy-glutarate, acetyl-CoA, cis-aconitate, D-isocitrate, a-ketoglutarate, succinyl-CoA, malate, (-)O-acetyl-carnitine, itaconate, glycolate, glyoxylate, oxalate, oxalyl-CoA, formyl- CoA, glucose 6-phosphate (G6P), fructose 6-phosphate (F6P), fructose 1,6-biphosphate (F1,6BP), glyceraldehyde 3-phosphate (GADP), dihydroxyacetone phosphate (DHAP), 1,3-bisphosphoglyceric acid (1,3BPG), 3-phosphoglyceric acid (3PG), 2-phosphoglyceric acid (2PG), phosphoenolpyruvic acid (PEP), D-glucose, D-glucono-l,5-lactone, D-gluconate, oc-D-mannose 6-P, D-mannose, D-fructose, D-sorbitol, glycerone-P, sn-glycerol-3P, D-glyceraldehyde, 1,2 propane-diol, 2-hydroxypropionaldehyde, 3-P-serine, 3-P-hydroxypyruvate, D-glycerate, hydroxy pyruvate, L-alanine, L-alanyl-tRNA, L-glutamate, 2- oxoglutarate, L-lactate, D-lactate, adenosine triphosphate (ATP), adenosine diphosphate (ADP), H+, succinate, 0₂, NADH, NAD+, NADP+, NADPH, 6-phosphogluconolatone, 6-phosphogluconate, ribulose-5- phosphate, ribose-5-phosphate, xylulose-5-phosphate, glyceraldehyde 3-phosphate, sedoheptulose 7- phosphate, fructose 6-phosphate, erythrose 4-phosphate, xylulose 5-phosphate, D-ribulose, D-ribitol, D- ribose, L-ribulose, sedoheptulose 1,7P₂, 3-oxo-6-P-hexulose, L-ornithine, carbamoyl phosphate, L- citrulline, argininosuccinate, L-arginine, L-aspartate, adenosine monophosphate (AMP), pyrophosphate, trans-A²-enoyl-CoA, L^-hydroxyacyl CoA, β-ketoacyl CoA, FADH2, acyl-CoA, propionyl-CoA, inosine monophosphate (IMP), xanthosine monophosphate (XMP), guanosine monophosphate (GMP), xanthosine, adenylosuccinate, uridine, uridine monophosphate (UMP), thymidine, thymine, deoxyribose-l-phosphate, deoxythymidine monophosphate (dTMP), deoxycytidine, deoxycytidine monophosphate (dCMP), retinyl palmitate, palmitate, palmityl-CoA, retinoate, β-glucuronide, retinal, β- carotene, retinoic acid, calcidiol, 25-hydroyergocalciferol, calcitriol, methylcobalamin, 5'- deoxyadenosylcobalamin, oc-CECH, NH₄+, a-ketoglutarate, oxaloacetate, glutamate γ-semialdehyde, Δ¹- pyrroline-5-carboxylate, citrulline, NH₃, /V⁵,/V¹⁰-methyleneTHF, 3-phosphoglycerate, a-ketobutyrate, a- amino^-ketobutyrate, aminoacetone, cysteine sulfinate, β-sulfinylpyruvate, bisulfite, sulfite, sulfate, glutathione, hypotaurine, adenosine 5'-phosphosulfate, 3'-phosphoadenosine 5'-phosphosulfate, homocysteine, oc-keto^-methylvalerate, -ketoisocaproate, -ketoisovalerate, -methylbutyryl-CoA, tiglyl-CoA, 3-methyl-3-hydroxybutyryl-CoA, 2-methylacetoacetyl-CoA, isovaleryl-CoA, 3-methylcrotonyl- CoA, 3-methylglutaconyl-CoA, 3-hydroxy-3-methylglutaryl-CoA, acetoacetate, isobutyryl CoA, methacrylyl-CoA, 3-hydroxyisobutyryl-CoA, methylmalonic semialdehyde, p-hydroxyphenylpyruvate, homogentisate, 4-maleylacetoacetate, 4-fumarylacetoacetate, fumarate, 3-hydroxytrimethyllysine, 4-/V- trimethylaminobutyraldehyde, γ-butyrobetaine, urocanate, 4-imidazolone-5-propionate, N- formimidoyl-L-glutamate, /V⁵-formimino-tetrahydrofolate, histamine, N-formyl-kynurenine, kynurenine, kynurenate, 3-hydroxykynurenine, anthranilate, 3-hydroxyanthranilate, glutaryl-CoA, acetoacetyl-CoA, and combinations thereof.

3. The diagnostic panel of claim 1, wherein said virus is chosen from the group consisting of human immunodeficiency virus (HIV), herpes simplex virus (HSV-1 and HSV-2), human T-lymohotropic virus (HTLV), John Cunningham virus (JC Virus), vesicular stomatitis virus (VSV), hepatitis C virus (HCV), hepatitis B virus (HBV), Zika virus, Dengue virus, Chikungunya virus, Ebola virus, adeno-associated virus, aichi virus, Australian bat lyssavirus, BK polyomavirus, Banna virus, Barmah forest virus, Bunyamwera virus, Bunyavirus La Crosse, Bunyavirus snowshoe hare, Cercopithecine herpesvirus, Chandipura virus, Cosavirus A, Cowpox virus, Coxsackievirus, Crimean-Congo hemorrhagic fever virus, Dhori virus, Dugbe virus, Duvenhage virus, Eastern equine encephalitis virus, Echovirus, Encephalomyocarditis virus, Epstein-Barr virus, European bat lyssavirus, Hepatitis G virus, Hantaan virus, Hendra virus, Hepatitis A virus, Hepatitis E virus, Hepatitis delta virus, Horsepox virus, human adenovirus, human astrovirus, human coronavirus, human cytomegalovirus, human enterovirus 68, human enterovirus 70, human herpesvirus 6, human herpesvirus 7, human herpes virus 8, human papillomavirus (HPV) 1, HPV 2, HPV 16, HPV 18, human parainfluenza, human parvovirus B19, human respiratory syncytial virus, human rhinovirus, human severe acute respiratory syndrome (SARS) coronavirus, human spumaretrovirus, human torovirus, influenza A virus, influenza B virus, influenza C virus, Isfahan virus, JC polyomavirus, Japanese encephalitis virus, Junin arenavirus, Kl polyomavirus, Kunjin virus, Lagos bat virus, Lake Victoria marburgvirus, Langat virus, Lassa virus, Lordsdale virus, Louping ill virus, lymphocytic choriomeningitis virus, Machupo virus, Mayaro virus, Middle East Respiratory Syndrome (MERS) coronavirus, measles virus, Mengo encephalomyocarditis virus, Merkel cell polyomavirus, Mokola virus, Molluscum contagiousum virus, monkeypox virus, mumps virus, Murray valley encephalitis virus, New York virus, Nipah virus, Norwalk virus, O'nyong-nyong virus, Orf virus, Oropouche virus, Pichinde virus, Poliovirus, Punta toro phlebovirus, Puumala virus, Rabies virus, Rift valley fever virus, Rosavirus A, Ross river virus, Rotavirus A, Rotavirus B, Rotavirus C, Rubella virus, Sagiyama virus, Salivirus A, sandfly fever Sicilian virus, Sapporo virus, Semliki forest virus, Seoul virus, simian foamy virus, simian virus 5, Sindbis virus, Southhampton virus, St. Louis encephalitis virus, tick-borne powassan virus, torque teno virus, Toscana virus, Ulukuniemi virus, vaccinia virus, varicella-zoster virus, variola virus, Venezuelan equine encephalitis virus, vesicular stomatitis virus, western equine encephalitis virus, WU polyomavirus, West Nile virus, Yaba monkey tumor virus, Yaba-like disease virus, and yellow fever virus.

4. The diagnostic panel of claim 1, wherein said panel includes a support structure of a flat microwell plate.

5. The diagnostic panel of claim 1, wherein said panel is enclosed in a housing.

6. The diagnostic panel of claim 1, wherein said panel further includes sensors that sense a concentration of said at least one biomarker.

7. A kit comprising a diagnostic panel including a test for detecting at least one biomarker that indicates the presence of a virus, instructions for use, materials to take and apply samples to said panel, and descriptions of biomarker levels and their meaning.

8. The kit of claim 7, wherein said at least one biomarker is a metabolite chosen from the group consisting of 1,3-dimethylurate, levoglucosan, 1-methylnicotinamide, metabolite 1, 2- hydroxyisobutyrate, 2-oxoglutarate, 3-aminoisobutyrate, 3-hydroxybutyrate, 3-hydroxyisovalerate, 3- indoxylsulfate, 4-hydroxyphenylacetate, 4-hydroxyphenyllactate, 4-pyridoxate, acetate, acetoacetate, acetone, adipate, alanine, allantoin, asparagine, betaine, carnitine, citrate, creatine, creatinine, dimethylamine, ethanolamine, formate, fucose, fumarate, glucose, glutamine, glycine, metabolite 2, metabolite 3, hippurate, histidine, hypoxanthine, isoleucine, lactate, leucine, lysine, mannitol, metabolite 4, metabolite 5, metabolite 6, Ν,Ν-dimethylglycine, O-acetylcarnitine, pantothenate, propylene glycol, pyroglutamate, pyruvate, quinolinate, serine, succinate, sucrose, metabolite 7, taurine, threonine, trigonelline, trimethylamine-N-oxide, tryptophan, tyrosine, uracil, urea, valine, xylose, cis-aconitate, myo-inositol, trans-aconitate, 1-methylhistidine, 3-methylhistidine, ascorbate, phenylacetylglutamine, 4-hydroxyproline, gluconate, galactose, galactitol, galactonate, lactose, phenylalanine, proline betaine, trimethylamine, butyrate, propionate, isopropanol, mannose, 3- methylxanthine, ethanol, benzoate, glutamate, glycerol, guanosine, guanine, xanthine, uric acid, adenosine, inosine, inosinic acid, C0₂, H₂0, N-carboamoyl- -alanine, beta-alanine, ammonia, β- aminoisobutyrate, putrescine, spermidine, spermine, methionine, S-adenosylmethionine, decarboxylated S-adenosylmethionine, arginine, ornithine, putrescine, Nl-acetylspermidine, Nl- acetylspermine, elF5A(Lys), elF5A(Dhp), elF5A(Hpu), NlN2-diacetylspermine, 3-aminopropanal, 3- acetylaminopropanal, acrolein, FDP-lysine protein, threo-Ds-isocitrate, oxalo-succinate, 2-oxo-glutarate, oxalo-acetate, L-glutamate, 2-hydroxy-glutarate, acetyl-CoA, cis-aconitate, D-isocitrate, a-ketoglutarate, succinyl-CoA, malate, (-)O-acetyl-carnitine, itaconate, glycolate, glyoxylate, oxalate, oxalyl-CoA, formyl- CoA, glucose 6-phosphate (G6P), fructose 6-phosphate (F6P), fructose 1,6-biphosphate (F1,6BP), glyceraldehyde 3-phosphate (GADP), dihydroxyacetone phosphate (DHAP), 1,3-bisphosphoglyceric acid (1,3BPG), 3-phosphoglyceric acid (3PG), 2-phosphoglyceric acid (2PG), phosphoenolpyruvic acid (PEP), D-glucose, D-glucono-l,5-lactone, D-gluconate, oc-D-mannose 6-P, D-mannose, D-fructose, D-sorbitol, glycerone-P, sn-glycerol-3P, D-glyceraldehyde, 1,2 propane-diol, 2-hydroxypropionaldehyde, 3-P-serine, 3-P-hydroxypyruvate, D-glycerate, hydroxy pyruvate, L-alanine, L-alanyl-tRNA, L-glutamate, 2- oxoglutarate, L-lactate, D-lactate, adenosine triphosphate (ATP), adenosine diphosphate (ADP), H+, succinate, 0₂, NADH, NAD+, NADP+, NADPH, 6-phosphogluconolatone, 6-phosphogluconate, ribulose-5- phosphate, ribose-5-phosphate, xylulose-5-phosphate, glyceraldehyde 3-phosphate, sedoheptulose 7- phosphate, fructose 6-phosphate, erythrose 4-phosphate, xylulose 5-phosphate, D-ribulose, D-ribitol, D- ribose, L-ribulose, sedoheptulose 1,7P₂, 3-oxo-6-P-hexulose, L-ornithine, carbamoyl phosphate, L- citrulline, argininosuccinate, L-arginine, L-aspartate, adenosine monophosphate (AMP), pyrophosphate, trans-A²-enoyl-CoA, L^-hydroxyacyl CoA, β-ketoacyl CoA, FADH2, acyl-CoA, propionyl-CoA, inosine monophosphate (IMP), xanthosine monophosphate (XMP), guanosine monophosphate (GMP), xanthosine, adenylosuccinate, uridine, uridine monophosphate (UMP), thymidine, thymine, deoxyribose-l-phosphate, deoxythymidine monophosphate (dTMP), deoxycytidine, deoxycytidine monophosphate (dCMP), retinyl palmitate, palmitate, palmityl-CoA, retinoate, β-glucuronide, retinal, β- carotene, retinoic acid, calcidiol, 25-hydroyergocalciferol, calcitriol, methylcobalamin, 5'- deoxyadenosylcobalamin, oc-CECH, NH₄+, a-ketoglutarate, oxaloacetate, glutamate γ-semialdehyde, Δ¹- pyrroline-5-carboxylate, citrulline, N H3, /V⁵,/V¹⁰-methyleneTHF, 3-phosphoglycerate, a-ketobutyrate, a- amino^-ketobutyrate, aminoacetone, cysteine sulfinate, β-sulfinylpyruvate, bisulfite, sulfite, sulfate, glutathione, hypotaurine, adenosine 5'-phosphosulfate, 3'-phosphoadenosine 5'-phosphosulfate, homocysteine, oc-keto^-methylvalerate, -ketoisocaproate, -ketoisovalerate, -methylbutyryl-CoA, tiglyl-CoA, 3-methyl-3-hydroxybutyryl-CoA, 2-methylacetoacetyl-CoA, isovaleryl-CoA, 3-methylcrotonyl- CoA, 3-methylglutaconyl-CoA, 3-hydroxy-3-methylglutaryl-CoA, acetoacetate, isobutyryl CoA, methacrylyl-CoA, 3-hydroxyisobutyryl-CoA, methylmalonic semialdehyde, p-hydroxyphenylpyruvate, homogentisate, 4-maleylacetoacetate, 4-fumarylacetoacetate, fumarate, 3-hydroxytrimethyllysine, 4-/V- trimethylaminobutyraldehyde, γ-butyrobetaine, urocanate, 4-imidazolone-5-propionate, N- formimidoyl-L-glutamate, /V⁵-formimino-tetrahydrofolate, histamine, N-formyl-kynurenine, kynurenine, kynurenate, 3-hydroxykynurenine, anthranilate, 3-hydroxyanthranilate, glutaryl-CoA, acetoacetyl-CoA, and combinations thereof.

9. A method of detecting the presence of disease, including the steps of:

taking a sample of an individual;

applying the sample to a diagnostic panel including at least one biomarker indicative of disease; detecting the presence of at least one biomarker;

comparing levels of the biomarker to a baseline; and

determining if the individual has a disease.

10. The method of claim 9, wherein the at least one biomarker is a metabolite chosen from the group consisting of 1,3-dimethylurate, levoglucosan, 1-methylnicotinamide, metabolite 1, 2- hydroxyisobutyrate, 2-oxoglutarate, 3-aminoisobutyrate, 3-hydroxybutyrate, 3-hydroxyisovalerate, 3- indoxylsulfate, 4-hydroxyphenylacetate, 4-hydroxyphenyllactate, 4-pyridoxate, acetate, acetoacetate, acetone, adipate, alanine, allantoin, asparagine, betaine, carnitine, citrate, creatine, creatinine, dimethylamine, ethanolamine, formate, fucose, fumarate, glucose, glutamine, glycine, metabolite 2, metabolite 3, hippurate, histidine, hypoxanthine, isoleucine, lactate, leucine, lysine, mannitol, metabolite 4, metabolite 5, metabolite 6, Ν,Ν-dimethylglycine, O-acetylcarnitine, pantothenate, propylene glycol, pyroglutamate, pyruvate, quinolinate, serine, succinate, sucrose, metabolite 7, taurine, threonine, trigonelline, trimethylamine-N-oxide, tryptophan, tyrosine, uracil, urea, valine, xylose, cis-aconitate, myo-inositol, trans-aconitate, 1-methylhistidine, 3-methylhistidine, ascorbate, phenylacetylglutamine, 4-hydroxyproline, gluconate, galactose, galactitol, galactonate, lactose, phenylalanine, proline betaine, trimethylamine, butyrate, propionate, isopropanol, mannose, 3- methylxanthine, ethanol, benzoate, glutamate, glycerol, guanosine, guanine, xanthine, uric acid, adenosine, inosine, inosinic acid, C0₂, H₂0, N-carboamoyl- -alanine, beta-alanine, ammonia, β- aminoisobutyrate, putrescine, spermidine, spermine, methionine, S-adenosylmethionine, decarboxylated S-adenosylmethionine, arginine, ornithine, putrescine, Nl-acetylspermidine, Nl- acetylspermine, elF5A(Lys), elF5A(Dhp), elF5A(Hpu), NlN2-diacetylspermine, 3-aminopropanal, 3- acetylaminopropanal, acrolein, FDP-lysine protein, threo-Ds-isocitrate, oxalo-succinate, 2-oxo-glutarate, oxalo-acetate, L-glutamate, 2-hydroxy-glutarate, acetyl-CoA, cis-aconitate, D-isocitrate, a-ketoglutarate, succinyl-CoA, malate, (-)O-acetyl-carnitine, itaconate, glycolate, glyoxylate, oxalate, oxalyl-CoA, formyl- CoA, glucose 6-phosphate (G6P), fructose 6-phosphate (F6P), fructose 1,6-biphosphate (F1,6BP), glyceraldehyde 3-phosphate (GADP), dihydroxyacetone phosphate (DHAP), 1,3-bisphosphoglyceric acid (1,3BPG), 3-phosphoglyceric acid (3PG), 2-phosphoglyceric acid (2PG), phosphoenolpyruvic acid (PEP), D-glucose, D-glucono-l,5-lactone, D-gluconate, oc-D-mannose 6-P, D-mannose, D-fructose, D-sorbitol, glycerone-P, sn-glycerol-3P, D-glyceraldehyde, 1,2 propane-diol, 2-hydroxypropionaldehyde, 3-P-serine, 3-P-hydroxypyruvate, D-glycerate, hydroxy pyruvate, L-alanine, L-alanyl-tRNA, L-glutamate, 2- oxoglutarate, L-lactate, D-lactate, adenosine triphosphate (ATP), adenosine diphosphate (ADP), H+, succinate, 0₂, NADH, NAD+, NADP+, NADPH, 6-phosphogluconolatone, 6-phosphogluconate, ribulose-5- phosphate, ribose-5-phosphate, xylulose-5-phosphate, glyceraldehyde 3-phosphate, sedoheptulose 7- phosphate, fructose 6-phosphate, erythrose 4-phosphate, xylulose 5-phosphate, D-ribulose, D-ribitol, D- ribose, L-ribulose, sedoheptulose 1,7P₂, 3-oxo-6-P-hexulose, L-ornithine, carbamoyl phosphate, L- citrulline, argininosuccinate, L-arginine, L-aspartate, adenosine monophosphate (AMP), pyrophosphate, trans-A²-enoyl-CoA, L- -hydroxyacyl CoA, β-ketoacyl CoA, FADH2, acyl-CoA, propionyl-CoA, inosine monophosphate (IMP), xanthosine monophosphate (XMP), guanosine monophosphate (GMP), xanthosine, adenylosuccinate, uridine, uridine monophosphate (UMP), thymidine, thymine, deoxyribose-l-phosphate, deoxythymidine monophosphate (dTMP), deoxycytidine, deoxycytidine monophosphate (dCMP), retinyl palmitate, palmitate, palmityl-CoA, retinoate, β-glucuronide, retinal, β- carotene, retinoic acid, calcidiol, 25-hydroyergocalciferol, calcitriol, methylcobalamin, 5'- deoxyadenosylcobalamin, -CECH, NH₄+, a-ketoglutarate, oxaloacetate, glutamate γ-semialdehyde, Δ¹- pyrroline-5-carboxylate, citrulline, NH₃, /V⁵,/V¹⁰-methyleneTHF, 3-phosphoglycerate, a-ketobutyrate, a- amino- -ketobutyrate, aminoacetone, cysteine sulfinate, β-sulfinylpyruvate, bisulfite, sulfite, sulfate, glutathione, hypotaurine, adenosine 5'-phosphosulfate, 3'-phosphoadenosine 5'-phosphosulfate, homocysteine, oc-keto-P-methylvalerate, -ketoisocaproate, oc-ketoisovalerate, -methylbutyryl-CoA, tiglyl-CoA, 3-methyl-3-hydroxybutyryl-CoA, 2-methylacetoacetyl-CoA, isovaleryl-CoA, 3-methylcrotonyl- CoA, 3-methylglutaconyl-CoA, 3-hydroxy-3-methylglutaryl-CoA, acetoacetate, isobutyryl CoA, methacrylyl-CoA, 3-hydroxyisobutyryl-CoA, methylmalonic semialdehyde, p-hydroxyphenylpyruvate, homogentisate, 4-maleylacetoacetate, 4-fumarylacetoacetate, fumarate, 3-hydroxytrimethyllysine, 4-/V- trimethylaminobutyraldehyde, γ-butyrobetaine, urocanate, 4-imidazolone-5-propionate, N- formimidoyl-L-glutamate, /V⁵-formimino-tetrahydrofolate, histamine, N-formyl-kynurenine, kynurenine, kynurenate, 3-hydroxykynurenine, anthranilate, 3-hydroxyanthranilate, glutaryl-CoA, acetoacetyl-CoA, and combinations thereof.

11. The method of claim 9, wherein the disease is a virus chosen from the group consisting of human immunodeficiency virus (HIV), herpes simplex virus (HSV-1 and HSV-2), human T-lymohotropic virus (HTLV), John Cunningham virus (JC Virus), vesicular stomatitis virus (VSV), hepatitis C virus (HCV), hepatitis B virus (HBV), Zika virus, Dengue virus, Chikungunya virus, Ebola virus, adeno-associated virus, aichi virus, Australian bat lyssavirus, BK polyomavirus, Banna virus, Barmah forest virus, Bunyamwera virus, Bunyavirus La Crosse, Bunyavirus snowshoe hare, Cercopithecine herpesvirus, Chandipura virus, Cosavirus A, Cowpox virus, Coxsackievirus, Crimean-Congo hemorrhagic fever virus, Dhori virus, Dugbe virus, Duvenhage virus, Eastern equine encephalitis virus, Echovirus, Encephalomyocarditis virus, Epstein-Barr virus, European bat lyssavirus, Hepatitis G virus, Hantaan virus, Hendra virus, Hepatitis A virus, Hepatitis E virus, Hepatitis delta virus, Horsepox virus, human adenovirus, human astrovirus, human coronavirus, human cytomegalovirus, human enterovirus 68, human enterovirus 70, human herpesvirus 6, human herpesvirus 7, human herpes virus 8, human papillomavirus (HPV) 1, HPV 2, HPV 16, HPV 18, human parainfluenza, human parvovirus B19, human respiratory syncytial virus, human rhinovirus, human severe acute respiratory syndrome (SARS) coronavirus, human spumaretrovirus, human torovirus, influenza A virus, influenza B virus, influenza C virus, Isfahan virus, JC polyomavirus, Japanese encephalitis virus, Junin arenavirus, Kl polyomavirus, Kunjin virus, Lagos bat virus, Lake Victoria marburgvirus, Langat virus, Lassa virus, Lordsdale virus, Louping ill virus, lymphocytic choriomeningitis virus, Machupo virus, Mayaro virus, Middle East Respiratory Syndrome (MERS) coronavirus, measles virus, Mengo encephalomyocarditis virus, Merkel cell polyomavirus, Mokola virus, Molluscum contagiousum virus, monkeypox virus, mumps virus, Murray valley encephalitis virus, New York virus, Nipah virus, Norwalk virus, O'nyong-nyong virus, Orf virus, Oropouche virus, Pichinde virus, Poliovirus, Punta toro phlebovirus, Puumala virus, Rabies virus, Rift valley fever virus, Rosavirus A, Ross river virus, Rotavirus A, Rotavirus B, Rotavirus C, Rubella virus, Sagiyama virus, Salivirus A, sandfly fever Sicilian virus, Sapporo virus, Semliki forest virus, Seoul virus, simian foamy virus, simian virus 5, Sindbis virus, Southhampton virus, St. Louis encephalitis virus, tick-borne powassan virus, torque teno virus, Toscana virus, Ulukuniemi virus, vaccinia virus, varicella-zoster virus, variola virus, Venezuelan equine encephalitis virus, vesicular stomatitis virus, western equine encephalitis virus, WU polyomavirus, West Nile virus, Yaba monkey tumor virus, Yaba-like disease virus, and yellow fever virus.

12. The method of claim 9, wherein said detecting step includes using a method chosen from the group consisting of liquid chromatography, gas chromatography, liquid chromatography - mass spectrometry, gas chromatography - mass spectrometry, high performance liquid chromatography - mass spectrometry, capillary electrophoresis - mass spectrometry, nuclear magnetic resonance spectrometry (NMR), raman spectroscopy, and infrared spectroscopy.

13. The method of claim 9, wherein the sample is chosen from the group consisting of blood, plasma, urine, saliva, tears, tissue, and cerebral spinal fluid (CSF).

14. A method of determining the stage of a disease, including the steps of:

taking a sample of an individual;

applying the sample to a diagnostic panel including at least one biomarker indicative of disease; detecting the presence of at least one biomarker;

comparing levels of the biomarker to known stage levels; and

determining the stage of the disease in the individual.

15. The method of claim 14, wherein the at least one biomarker is a metabolite chosen from the group consisting of 1,3-dimethylurate, levoglucosan, 1-methylnicotinamide, metabolite 1, 2- hydroxyisobutyrate, 2-oxoglutarate, 3-aminoisobutyrate, 3-hydroxybutyrate, 3-hydroxyisovalerate, 3- indoxylsulfate, 4-hydroxyphenylacetate, 4-hydroxyphenyllactate, 4-pyridoxate, acetate, acetoacetate, acetone, adipate, alanine, allantoin, asparagine, betaine, carnitine, citrate, creatine, creatinine, dimethylamine, ethanolamine, formate, fucose, fumarate, glucose, glutamine, glycine, metabolite 2, metabolite 3, hippurate, histidine, hypoxanthine, isoleucine, lactate, leucine, lysine, mannitol, metabolite 4, metabolite 5, metabolite 6, Ν,Ν-dimethylglycine, O-acetylcarnitine, pantothenate, propylene glycol, pyroglutamate, pyruvate, quinolinate, serine, succinate, sucrose, metabolite 7, taurine, threonine, trigonelline, trimethylamine-N-oxide, tryptophan, tyrosine, uracil, urea, valine, xylose, cis-aconitate, myo-inositol, trans-aconitate, 1-methylhistidine, 3-methylhistidine, ascorbate, phenylacetylglutamine, 4-hydroxyproline, gluconate, galactose, galactitol, galactonate, lactose, phenylalanine, proline betaine, trimethylamine, butyrate, propionate, isopropanol, mannose, 3- methylxanthine, ethanol, benzoate, glutamate, glycerol, guanosine, guanine, xanthine, uric acid, adenosine, inosine, inosinic acid, C0₂, H₂0, N-carboamoyl- -alanine, beta-alanine, ammonia, β- aminoisobutyrate, putrescine, spermidine, spermine, methionine, S-adenosylmethionine, decarboxylated S-adenosylmethionine, arginine, ornithine, putrescine, Nl-acetylspermidine, Nl- acetylspermine, elF5A(Lys), elF5A(Dhp), elF5A(Hpu), NlN2-diacetylspermine, 3-aminopropanal, 3- acetylaminopropanal, acrolein, FDP-lysine protein, threo-Ds-isocitrate, oxalo-succinate, 2-oxo-glutarate, oxalo-acetate, L-glutamate, 2-hydroxy-glutarate, acetyl-CoA, cis-aconitate, D-isocitrate, a-ketoglutarate, succinyl-CoA, malate, (-)O-acetyl-carnitine, itaconate, glycolate, glyoxylate, oxalate, oxalyl-CoA, formyl- CoA, glucose 6-phosphate (G6P), fructose 6-phosphate (F6P), fructose 1,6-biphosphate (F1,6BP), glyceraldehyde 3-phosphate (GADP), dihydroxyacetone phosphate (DHAP), 1,3-bisphosphoglyceric acid (1,3BPG), 3-phosphoglyceric acid (3PG), 2-phosphoglyceric acid (2PG), phosphoenolpyruvic acid (PEP), D-glucose, D-glucono-l,5-lactone, D-gluconate, oc-D-mannose 6-P, D-mannose, D-fructose, D-sorbitol, glycerone-P, sn-glycerol-3P, D-glyceraldehyde, 1,2 propane-diol, 2-hydroxypropionaldehyde, 3-P-serine, 3-P-hydroxypyruvate, D-glycerate, hydroxy pyruvate, L-alanine, L-alanyl-tRNA, L-glutamate, 2- oxoglutarate, L-lactate, D-lactate, adenosine triphosphate (ATP), adenosine diphosphate (ADP), H+, succinate, 0₂, NADH, NAD+, NADP+, NADPH, 6-phosphogluconolatone, 6-phosphogluconate, ribulose-5- phosphate, ribose-5-phosphate, xylulose-5-phosphate, glyceraldehyde 3-phosphate, sedoheptulose 7- phosphate, fructose 6-phosphate, erythrose 4-phosphate, xylulose 5-phosphate, D-ribulose, D-ribitol, D- ribose, L-ribulose, sedoheptulose 1,7P₂, 3-oxo-6-P-hexulose, L-ornithine, carbamoyl phosphate, L- citrulline, argininosuccinate, L-arginine, L-aspartate, adenosine monophosphate (AMP), pyrophosphate, trans-A²-enoyl-CoA, L- -hydroxyacyl CoA, β-ketoacyl CoA, FADH2, acyl-CoA, propionyl-CoA, inosine monophosphate (IMP), xanthosine monophosphate (XMP), guanosine monophosphate (GMP), xanthosine, adenylosuccinate, uridine, uridine monophosphate (UMP), thymidine, thymine, deoxyribose-l-phosphate, deoxythymidine monophosphate (dTMP), deoxycytidine, deoxycytidine monophosphate (dCMP), retinyl palmitate, palmitate, palmityl-CoA, retinoate, β-glucuronide, retinal, β- carotene, retinoic acid, calcidiol, 25-hydroyergocalciferol, calcitriol, methylcobalamin, 5'- deoxyadenosylcobalamin, a-CECH, NH₄+, a-ketoglutarate, oxaloacetate, glutamate γ-semialdehyde, Δ¹- pyrroline-5-carboxylate, citrulline, NH₃, /V⁵,/V¹⁰-methyleneTHF, 3-phosphoglycerate, a-ketobutyrate, a- amino- -ketobutyrate, aminoacetone, cysteine sulfinate, β-sulfinylpyruvate, bisulfite, sulfite, sulfate, glutathione, hypotaurine, adenosine 5'-phosphosulfate, 3'-phosphoadenosine 5'-phosphosulfate, homocysteine, oc-keto-P-methylvalerate, -ketoisocaproate, oc-ketoisovalerate, -methylbutyryl-CoA, tiglyl-CoA, 3-methyl-3-hydroxybutyryl-CoA, 2-methylacetoacetyl-CoA, isovaleryl-CoA, 3-methylcrotonyl- CoA, 3-methylglutaconyl-CoA, 3-hydroxy-3-methylglutaryl-CoA, acetoacetate, isobutyryl CoA, methacrylyl-CoA, 3-hydroxyisobutyryl-CoA, methylmalonic semialdehyde, p-hydroxyphenylpyruvate, homogentisate, 4-maleylacetoacetate, 4-fumarylacetoacetate, fumarate, 3-hydroxytrimethyllysine, 4-/V- trimethylaminobutyraldehyde, γ-butyrobetaine, urocanate, 4-imidazolone-5-propionate, N- formimidoyl-L-glutamate, /V⁵-formimino-tetrahydrofolate, histamine, N-formyl-kynurenine, kynurenine, kynurenate, 3-hydroxykynurenine, anthranilate, 3-hydroxyanthranilate, glutaryl-CoA, acetoacetyl-CoA, and combinations thereof.

16. The method of claim 14, wherein the disease is a virus chosen from the group consisting of human immunodeficiency virus (HIV), herpes simplex virus (HSV-1 and HSV-2), human T-lymohotropic virus (HTLV), John Cunningham virus (JC Virus), vesicular stomatitis virus (VSV), hepatitis C virus (HCV), hepatitis B virus (HBV), Zika virus, Dengue virus, Chikungunya virus, Ebola virus, adeno-associated virus, aichi virus, Australian bat lyssavirus, BK polyomavirus, Banna virus, Barmah forest virus, Bunyamwera virus, Bunyavirus La Crosse, Bunyavirus snowshoe hare, Cercopithecine herpesvirus, Chandipura virus, Cosavirus A, Cowpox virus, Coxsackievirus, Crimean-Congo hemorrhagic fever virus, Dhori virus, Dugbe virus, Duvenhage virus, Eastern equine encephalitis virus, Echovirus, Encephalomyocarditis virus, Epstein-Barr virus, European bat lyssavirus, Hepatitis G virus, Hantaan virus, Hendra virus, Hepatitis A virus, Hepatitis E virus, Hepatitis delta virus, Horsepox virus, human adenovirus, human astrovirus, human coronavirus, human cytomegalovirus, human enterovirus 68, human enterovirus 70, human herpesvirus 6, human herpesvirus 7, human herpes virus 8, human papillomavirus (HPV) 1, HPV 2, HPV 16, HPV 18, human parainfluenza, human parvovirus B19, human respiratory syncytial virus, human rhinovirus, human severe acute respiratory syndrome (SARS) coronavirus, human spumaretrovirus, human torovirus, influenza A virus, influenza B virus, influenza C virus, Isfahan virus, JC polyomavirus, Japanese encephalitis virus, Junin arenavirus, Kl polyomavirus, Kunjin virus, Lagos bat virus, Lake Victoria marburgvirus, Langat virus, Lassa virus, Lordsdale virus, Louping ill virus, lymphocytic choriomeningitis virus, Machupo virus, Mayaro virus, Middle East Respiratory Syndrome (MERS) coronavirus, measles virus, Mengo encephalomyocarditis virus, Merkel cell polyomavirus, Mokola virus, Molluscum contagiousum virus, monkeypox virus, mumps virus, Murray valley encephalitis virus, New York virus, Nipah virus, Norwalk virus, O'nyong-nyong virus, Orf virus, Oropouche virus, Pichinde virus, Poliovirus, Punta toro phlebovirus, Puumala virus, Rabies virus, Rift valley fever virus, Rosavirus A, Ross river virus, Rotavirus A, Rotavirus B, Rotavirus C, Rubella virus, Sagiyama virus, Salivirus A, sandfly fever Sicilian virus, Sapporo virus, Semliki forest virus, Seoul virus, simian foamy virus, simian virus 5, Sindbis virus, Southhampton virus, St. Louis encephalitis virus, tick-borne powassan virus, torque teno virus, Toscana virus, Ulukuniemi virus, vaccinia virus, varicella-zoster virus, variola virus, Venezuelan equine encephalitis virus, vesicular stomatitis virus, western equine encephalitis virus, WU polyomavirus, West Nile virus, Yaba monkey tumor virus, Yaba-like disease virus, and yellow fever virus.

17. The method of claim 14, wherein said detecting step includes using a method chosen from the group consisting of liquid chromatography, gas chromatography, liquid chromatography - mass spectrometry, gas chromatography - mass spectrometry, high performance liquid chromatography - mass spectrometry, capillary electrophoresis - mass spectrometry, nuclear magnetic resonance spectrometry (NMR), raman spectroscopy, and infrared spectroscopy.

18. The method of claim 14, wherein the sample is chosen from the group consisting of blood, plasma, urine, saliva, tears, tissue, and cerebral spinal fluid (CSF).

19. A method of monitoring the progress of disease treatments, including the steps of:

taking a sample of an individual; applying the sample to a diagnostic panel including at least one biomarker indicative of disease; detecting the presence of at least one biomarker;

comparing levels of the biomarker to a baseline; and

determining if the treatment is working to reverse or prevent the disease.

20. The method of claim 19, wherein the at least one biomarker is a metabolite chosen from the group consisting of 1,3-dimethylurate, levoglucosan, 1-methylnicotinamide, metabolite 1, 2- hydroxyisobutyrate, 2-oxoglutarate, 3-aminoisobutyrate, 3-hydroxybutyrate, 3-hydroxyisovalerate, 3- indoxylsulfate, 4-hydroxyphenylacetate, 4-hydroxyphenyllactate, 4-pyridoxate, acetate, acetoacetate, acetone, adipate, alanine, allantoin, asparagine, betaine, carnitine, citrate, creatine, creatinine, dimethylamine, ethanolamine, formate, fucose, fumarate, glucose, glutamine, glycine, metabolite 2, metabolite 3, hippurate, histidine, hypoxanthine, isoleucine, lactate, leucine, lysine, mannitol, metabolite 4, metabolite 5, metabolite 6, Ν,Ν-dimethylglycine, O-acetylcarnitine, pantothenate, propylene glycol, pyroglutamate, pyruvate, quinolinate, serine, succinate, sucrose, metabolite 7, taurine, threonine, trigonelline, trimethylamine-N-oxide, tryptophan, tyrosine, uracil, urea, valine, xylose, cis-aconitate, myo-inositol, trans-aconitate, 1-methylhistidine, 3-methylhistidine, ascorbate, phenylacetylglutamine, 4-hydroxyproline, gluconate, galactose, galactitol, galactonate, lactose, phenylalanine, proline betaine, trimethylamine, butyrate, propionate, isopropanol, mannose, 3- methylxanthine, ethanol, benzoate, glutamate, glycerol, guanosine, guanine, xanthine, uric acid, adenosine, inosine, inosinic acid, C0₂, H₂0, N-carboamoyl- -alanine, beta-alanine, ammonia, β- aminoisobutyrate, putrescine, spermidine, spermine, methionine, S-adenosylmethionine, decarboxylated S-adenosylmethionine, arginine, ornithine, putrescine, Nl-acetylspermidine, Nl- acetylspermine, elF5A(Lys), elF5A(Dhp), elF5A(Hpu), NlN2-diacetylspermine, 3-aminopropanal, 3- acetylaminopropanal, acrolein, FDP-lysine protein, threo-Ds-isocitrate, oxalo-succinate, 2-oxo-glutarate, oxalo-acetate, L-glutamate, 2-hydroxy-glutarate, acetyl-CoA, cis-aconitate, D-isocitrate, a-ketoglutarate, succinyl-CoA, malate, (-)O-acetyl-carnitine, itaconate, glycolate, glyoxylate, oxalate, oxalyl-CoA, formyl- CoA, glucose 6-phosphate (G6P), fructose 6-phosphate (F6P), fructose 1,6-biphosphate (F1,6BP), glyceraldehyde 3-phosphate (GADP), dihydroxyacetone phosphate (DHAP), 1,3-bisphosphoglyceric acid (1,3BPG), 3-phosphoglyceric acid (3PG), 2-phosphoglyceric acid (2PG), phosphoenolpyruvic acid (PEP), D-glucose, D-glucono-l,5-lactone, D-gluconate, oc-D-mannose 6-P, D-mannose, D-fructose, D-sorbitol, glycerone-P, sn-glycerol-3P, D-glyceraldehyde, 1,2 propane-diol, 2-hydroxypropionaldehyde, 3-P-serine, 3-P-hydroxypyruvate, D-glycerate, hydroxy pyruvate, L-alanine, L-alanyl-tRNA, L-glutamate, 2- oxoglutarate, L-lactate, D-lactate, adenosine triphosphate (ATP), adenosine diphosphate (ADP), H+, succinate, 0₂, NADH, NAD+, NADP+, NADPH, 6-phosphogluconolatone, 6-phosphogluconate, ribulose-5- phosphate, ribose-5-phosphate, xylulose-5-phosphate, glyceraldehyde 3-phosphate, sedoheptulose 7- phosphate, fructose 6-phosphate, erythrose 4-phosphate, xylulose 5-phosphate, D-ribulose, D-ribitol, D- ribose, L-ribulose, sedoheptulose 1,7P₂, 3-oxo-6-P-hexulose, L-ornithine, carbamoyl phosphate, L- citrulline, argininosuccinate, L-arginine, L-aspartate, adenosine monophosphate (AMP), pyrophosphate, trans-A²-enoyl-CoA, L^-hydroxyacyl CoA, β-ketoacyl CoA, FADH2, acyl-CoA, propionyl-CoA, inosine monophosphate (IMP), xanthosine monophosphate (XMP), guanosine monophosphate (GMP), xanthosine, adenylosuccinate, uridine, uridine monophosphate (UMP), thymidine, thymine, deoxyribose-l-phosphate, deoxythymidine monophosphate (dTMP), deoxycytidine, deoxycytidine monophosphate (dCMP), retinyl palmitate, palmitate, palmityl-CoA, retinoate, β-glucuronide, retinal, β- carotene, retinoic acid, calcidiol, 25-hydroyergocalciferol, calcitriol, methylcobalamin, 5'- deoxyadenosylcobalamin, oc-CECH, NH₄+, a-ketoglutarate, oxaloacetate, glutamate γ-semialdehyde, Δ¹- pyrroline-5-carboxylate, citrulline, NH₃, /V⁵,/V¹⁰-methyleneTHF, 3-phosphoglycerate, a-ketobutyrate, a- amino^-ketobutyrate, aminoacetone, cysteine sulfinate, β-sulfinylpyruvate, bisulfite, sulfite, sulfate, glutathione, hypotaurine, adenosine 5'-phosphosulfate, 3'-phosphoadenosine 5'-phosphosulfate, homocysteine, oc-keto-P-methylvalerate, oc-ketoisocaproate, -ketoisovalerate, -methylbutyryl-CoA, tiglyl-CoA, 3-methyl-3-hydroxybutyryl-CoA, 2-methylacetoacetyl-CoA, isovaleryl-CoA, 3-methylcrotonyl- CoA, 3-methylglutaconyl-CoA, 3-hydroxy-3-methylglutaryl-CoA, acetoacetate, isobutyryl CoA, methacrylyl-CoA, 3-hydroxyisobutyryl-CoA, methylmalonic semialdehyde, p-hydroxyphenylpyruvate, homogentisate, 4-maleylacetoacetate, 4-fumarylacetoacetate, fumarate, 3-hydroxytrimethyllysine, 4-/V- trimethylaminobutyraldehyde, γ-butyrobetaine, urocanate, 4-imidazolone-5-propionate, N- formimidoyl-L-glutamate, /V⁵-formimino-tetrahydrofolate, histamine, N-formyl-kynurenine, kynurenine, kynurenate, 3-hydroxykynurenine, anthranilate, 3-hydroxyanthranilate, glutaryl-CoA, acetoacetyl-CoA, and combinations thereof.

21. The method of claim 19, wherein the disease being treated is a virus chosen from the group consisting of human immunodeficiency virus (HIV), herpes simplex virus (HSV-1 and HSV-2), human T- lymohotropic virus (HTLV), John Cunningham virus (JC Virus), vesicular stomatitis virus (VSV), hepatitis C virus (HCV), hepatitis B virus (HBV), Zika virus, Dengue virus, Chikungunya virus, Ebola virus, adeno- associated virus, aichi virus, Australian bat lyssavirus, BK polyomavirus, Banna virus, Barmah forest virus, Bunyamwera virus, Bunyavirus La Crosse, Bunyavirus snowshoe hare, Cercopithecine herpesvirus, Chandipura virus, Cosavirus A, Cowpox virus, Coxsackievirus, Crimean-Congo hemorrhagic fever virus, Dhori virus, Dugbe virus, Duvenhage virus, Eastern equine encephalitis virus, Echovirus, Encephalomyocarditis virus, Epstein-Barr virus, European bat lyssavirus, Hepatitis G virus, Hantaan virus, Hendra virus, Hepatitis A virus, Hepatitis E virus, Hepatitis delta virus, Horsepox virus, human adenovirus, human astrovirus, human coronavirus, human cytomegalovirus, human enterovirus 68, human enterovirus 70, human herpesvirus 6, human herpesvirus 7, human herpes virus 8, human papillomavirus (HPV) 1, HPV 2, HPV 16, HPV 18, human parainfluenza, human parvovirus B19, human respiratory syncytial virus, human rhinovirus, human severe acute respiratory syndrome (SARS) coronavirus, human spumaretrovirus, human torovirus, influenza A virus, influenza B virus, influenza C virus, Isfahan virus, JC polyomavirus, Japanese encephalitis virus, Junin arenavirus, Kl polyomavirus, Kunjin virus, Lagos bat virus, Lake Victoria marburgvirus, Langat virus, Lassa virus, Lordsdale virus, Louping ill virus, lymphocytic choriomeningitis virus, Machupo virus, Mayaro virus, Middle East Respiratory Syndrome (MERS) coronavirus, measles virus, Mengo encephalomyocarditis virus, Merkel cell polyomavirus, Mokola virus, Molluscum contagiousum virus, monkeypox virus, mumps virus, Murray valley encephalitis virus, New York virus, Nipah virus, Norwalk virus, O'nyong-nyong virus, Orf virus, Oropouche virus, Pichinde virus, Poliovirus, Punta toro phlebovirus, Puumala virus, Rabies virus, Rift valley fever virus, Rosavirus A, Ross river virus, Rotavirus A, Rotavirus B, Rotavirus C, Rubella virus, Sagiyama virus, Salivirus A, sandfly fever Sicilian virus, Sapporo virus, Semliki forest virus, Seoul virus, simian foamy virus, simian virus 5, Sindbis virus, Southhampton virus, St. Louis encephalitis virus, tick- borne powassan virus, torque teno virus, Toscana virus, Ulukuniemi virus, vaccinia virus, varicella-zoster virus, variola virus, Venezuelan equine encephalitis virus, vesicular stomatitis virus, western equine encephalitis virus, WU polyomavirus, West Nile virus, Yaba monkey tumor virus, Yaba-like disease virus, and yellow fever virus.

22. The method of claim 19, wherein said detecting step includes using a method chosen from the group consisting of liquid chromatography, gas chromatography, liquid chromatography - mass spectrometry, gas chromatography - mass spectrometry, high performance liquid chromatography - mass spectrometry, capillary electrophoresis - mass spectrometry, nuclear magnetic resonance spectrometry (NMR), raman spectroscopy, and infrared spectroscopy.

23. The method of claim 19, wherein the sample is chosen from the group consisting of blood, plasma, urine, saliva, tears, tissue, and cerebral spinal fluid (CSF).

24. The method of claim 19, wherein the treatment is chosen from the group consisting of CRISPR Cas9, CRISPR Cfpl, ZFNs, TALENS, Albumin-based editors, C2cl, C2c3, TevCas9, Archaea Cas9, CasY.l - CasY.6, CasX gRNAs, Argonaute endonuclease gDNAs, abacavir, aciclovir, acyclovir, adefovir, amantadine, amprenavir, ampligen, arbidol, atazanavir, atripla, balavir, cidofovir, combivir, dolutegravir, darunavir, delaviridine, didanosine, docosanol, edoxudine, efavirenz, emtricitabine, enfuvirtide, entecavir, ecoliever, famciclovir, fomivirsen, fosamprenavir, foscarnet, fosfonet, fusion inhibitor, ganciclovir, ibacitabine, imunovir, idoxuridine, imiquimod, indinavir, inosine, interferon, interferon type I, interferon type II, interferon type III, lamivudine, lopinavir, loviride, maraviroc, moroxydine, methisazone, nelfinavir, nevirapine, nexavir, nitazoxanide, nucleoside analogues, novir, oseltamivir, peginterferon oc-2a, penciclovir, peramivir, pleconaril, podophyllotoxin, raltegravir, ribavirin, rimantadine, ritonavir, pyramidine, saquinavir, sofosbuvir, telaprevir, tenofovir, tenofovir disoproxil, tipranavir, trifuridine, trizivir, tromantadine, truvada, valaciclovir, valganciclovir, vicriviroc, vidarabine, viramidine, zalcitabine, zanamivir, zidovudine, and combinations thereof.

25. The method of claim 19, further including the step of adjusting the treatment based on biomarker levels to improve effects in the individual.

26. A method of determining viral suppression or rebound, including the steps of:

taking a sample of an individual having a virus receiving treatment chosen from the group consisting of gene editing therapeutics, antiviral treatment, or combinations thereof;

applying the sample to a diagnostic panel including at least one biomarker indicative of disease; detecting the presence of at least one biomarker;

comparing levels of the biomarker to a baseline; and

determining if latent virus has been activated.

27. The method of claim 26, wherein the at least one biomarker is a metabolite chosen from the group consisting of 1,3-dimethylurate, levoglucosan, 1-methylnicotinamide, metabolite 1, 2- hydroxyisobutyrate, 2-oxoglutarate, 3-aminoisobutyrate, 3-hydroxybutyrate, 3-hydroxyisovalerate, 3- indoxylsulfate, 4-hydroxyphenylacetate, 4-hydroxyphenyllactate, 4-pyridoxate, acetate, acetoacetate, acetone, adipate, alanine, allantoin, asparagine, betaine, carnitine, citrate, creatine, creatinine, dimethylamine, ethanolamine, formate, fucose, fumarate, glucose, glutamine, glycine, metabolite 2, metabolite 3, hippurate, histidine, hypoxanthine, isoleucine, lactate, leucine, lysine, mannitol, metabolite 4, metabolite 5, metabolite 6, Ν,Ν-dimethylglycine, O-acetylcarnitine, pantothenate, propylene glycol, pyroglutamate, pyruvate, quinolinate, serine, succinate, sucrose, metabolite 7, taurine, threonine, trigonelline, trimethylamine-N-oxide, tryptophan, tyrosine, uracil, urea, valine, xylose, cis-aconitate, myo-inositol, trans-aconitate, 1-methylhistidine, 3-methylhistidine, ascorbate, phenylacetylglutamine, 4-hydroxyproline, gluconate, galactose, galactitol, galactonate, lactose, phenylalanine, proline betaine, trimethylamine, butyrate, propionate, isopropanol, mannose, 3- methylxanthine, ethanol, benzoate, glutamate, glycerol, guanosine, guanine, xanthine, uric acid, adenosine, inosine, inosinic acid, C0₂, H₂0, N-carboamoyl- -alanine, beta-alanine, ammonia, β- aminoisobutyrate, putrescine, spermidine, spermine, methionine, S-adenosylmethionine, decarboxylated S-adenosylmethionine, arginine, ornithine, putrescine, Nl-acetylspermidine, Nl- acetylspermine, elF5A(Lys), elF5A(Dhp), elF5A(Hpu), NlN2-diacetylspermine, 3-aminopropanal, 3- acetylaminopropanal, acrolein, FDP-lysine protein, threo-Ds-isocitrate, oxalo-succinate, 2-oxo-glutarate, oxalo-acetate, L-glutamate, 2-hydroxy-glutarate, acetyl-CoA, cis-aconitate, D-isocitrate, a-ketoglutarate, succinyl-CoA, malate, (-)O-acetyl-carnitine, itaconate, glycolate, glyoxylate, oxalate, oxalyl-CoA, formyl- CoA, glucose 6-phosphate (G6P), fructose 6-phosphate (F6P), fructose 1,6-biphosphate (F1,6BP), glyceraldehyde 3-phosphate (GADP), dihydroxyacetone phosphate (DHAP), 1,3-bisphosphoglyceric acid (1,3BPG), 3-phosphoglyceric acid (3PG), 2-phosphoglyceric acid (2PG), phosphoenolpyruvic acid (PEP), D-glucose, D-glucono-l,5-lactone, D-gluconate, oc-D-mannose 6-P, D-mannose, D-fructose, D-sorbitol, glycerone-P, sn-glycerol-3P, D-glyceraldehyde, 1,2 propane-diol, 2-hydroxypropionaldehyde, 3-P-serine, 3-P-hydroxypyruvate, D-glycerate, hydroxy pyruvate, L-alanine, L-alanyl-tRNA, L-glutamate, 2- oxoglutarate, L-lactate, D-lactate, adenosine triphosphate (ATP), adenosine diphosphate (ADP), H+, succinate, 0₂, NADH, NAD+, NADP+, NADPH, 6-phosphogluconolatone, 6-phosphogluconate, ribulose-5- phosphate, ribose-5-phosphate, xylulose-5-phosphate, glyceraldehyde 3-phosphate, sedoheptulose 7- phosphate, fructose 6-phosphate, erythrose 4-phosphate, xylulose 5-phosphate, D-ribulose, D-ribitol, D- ribose, L-ribulose, sedoheptulose 1,7P₂, 3-oxo-6-P-hexulose, L-ornithine, carbamoyl phosphate, L- citrulline, argininosuccinate, L-arginine, L-aspartate, adenosine monophosphate (AMP), pyrophosphate, trans-A²-enoyl-CoA, L^-hydroxyacyl CoA, β-ketoacyl CoA, FADH2, acyl-CoA, propionyl-CoA, inosine monophosphate (IMP), xanthosine monophosphate (XMP), guanosine monophosphate (GMP), xanthosine, adenylosuccinate, uridine, uridine monophosphate (UMP), thymidine, thymine, deoxyribose-l-phosphate, deoxythymidine monophosphate (dTMP), deoxycytidine, deoxycytidine monophosphate (dCMP), retinyl palmitate, palmitate, palmityl-CoA, retinoate, β-glucuronide, retinal, β- carotene, retinoic acid, calcidiol, 25-hydroyergocalciferol, calcitriol, methylcobalamin, 5'- deoxyadenosylcobalamin, oc-CECH, NH₄+, a-ketoglutarate, oxaloacetate, glutamate γ-semialdehyde, Δ¹- pyrroline-5-carboxylate, citrulline, N H3, /V⁵,/V¹⁰-methyleneTHF, 3-phosphoglycerate, a-ketobutyrate, a- amino^-ketobutyrate, aminoacetone, cysteine sulfinate, β-sulfinylpyruvate, bisulfite, sulfite, sulfate, glutathione, hypotaurine, adenosine 5'-phosphosulfate, 3'-phosphoadenosine 5'-phosphosulfate, homocysteine, oc-keto^-methylvalerate, -ketoisocaproate, -ketoisovalerate, -methylbutyryl-CoA, tiglyl-CoA, 3-methyl-3-hydroxybutyryl-CoA, 2-methylacetoacetyl-CoA, isovaleryl-CoA, 3-methylcrotonyl- CoA, 3-methylglutaconyl-CoA, 3-hydroxy-3-methylglutaryl-CoA, acetoacetate, isobutyryl CoA, methacrylyl-CoA, 3-hydroxyisobutyryl-CoA, methylmalonic semialdehyde, p-hydroxyphenylpyruvate, homogentisate, 4-maleylacetoacetate, 4-fumarylacetoacetate, fumarate, 3-hydroxytrimethyllysine, 4-/V- trimethylaminobutyraldehyde, γ-butyrobetaine, urocanate, 4-imidazolone-5-propionate, N- formimidoyl-L-glutamate, /V⁵-formimino-tetrahydrofolate, histamine, N-formyl-kynurenine, kynurenine, kynurenate, 3-hydroxykynurenine, anthranilate, 3-hydroxyanthranilate, glutaryl-CoA, acetoacetyl-CoA, and combinations thereof.

28. The method of claim 26, wherein the virus is chosen from the group consisting of human immunodeficiency virus (HIV), herpes simplex virus (HSV-1 and HSV-2), human T-lymohotropic virus (HTLV), John Cunningham virus (JC Virus), vesicular stomatitis virus (VSV), hepatitis C virus (HCV), hepatitis B virus (HBV), Zika virus, Dengue virus, Chikungunya virus, Ebola virus, adeno-associated virus, aichi virus, Australian bat lyssavirus, BK polyomavirus, Banna virus, Barmah forest virus, Bunyamwera virus, Bunyavirus La Crosse, Bunyavirus snowshoe hare, Cercopithecine herpesvirus, Chandipura virus, Cosavirus A, Cowpox virus, Coxsackievirus, Crimean-Congo hemorrhagic fever virus, Dhori virus, Dugbe virus, Duvenhage virus, Eastern equine encephalitis virus, Echovirus, Encephalomyocarditis virus, Epstein-Barr virus, European bat lyssavirus, Hepatitis G virus, Hantaan virus, Hendra virus, Hepatitis A virus, Hepatitis E virus, Hepatitis delta virus, Horsepox virus, human adenovirus, human astrovirus, human coronavirus, human cytomegalovirus, human enterovirus 68, human enterovirus 70, human herpesvirus 6, human herpesvirus 7, human herpes virus 8, human papillomavirus (HPV) 1, HPV 2, HPV 16, HPV 18, human parainfluenza, human parvovirus B19, human respiratory syncytial virus, human rhinovirus, human severe acute respiratory syndrome (SARS) coronavirus, human spumaretrovirus, human torovirus, influenza A virus, influenza B virus, influenza C virus, Isfahan virus, JC polyomavirus, Japanese encephalitis virus, Junin arenavirus, Kl polyomavirus, Kunjin virus, Lagos bat virus, Lake Victoria marburgvirus, Langat virus, Lassa virus, Lordsdale virus, Louping ill virus, lymphocytic choriomeningitis virus, Machupo virus, Mayaro virus, Middle East Respiratory Syndrome (MERS) coronavirus, measles virus, Mengo encephalomyocarditis virus, Merkel cell polyomavirus, Mokola virus, Molluscum contagiousum virus, monkeypox virus, mumps virus, Murray valley encephalitis virus, New York virus, Nipah virus, Norwalk virus, O' nyong-nyong virus, Orf virus, Oropouche virus, Pichinde virus, Poliovirus, Punta toro phlebovirus, Puumala virus, Rabies virus, Rift valley fever virus, Rosavirus A, Ross river virus, Rotavirus A, Rotavirus B, Rotavirus C, Rubella virus, Sagiyama virus, Salivirus A, sandfly fever Sicilian virus, Sapporo virus, Semliki forest virus, Seoul virus, simian foamy virus, simian virus 5, Sindbis virus, Southhampton virus, St. Louis encephalitis virus, tick-borne powassan virus, torque teno virus, Toscana virus, Ulukuniemi virus, vaccinia virus, varicella-zoster virus, variola virus, Venezuelan equine encephalitis virus, vesicular stomatitis virus, western equine encephalitis virus, WU polyomavirus, West Nile virus, Yaba monkey tumor virus, Yaba-like disease virus, and yellow fever virus.

29. The method of claim 26, wherein said detecting step includes using a method chosen from the group consisting of liquid chromatography, gas chromatography, liquid chromatography - mass spectrometry, gas chromatography - mass spectrometry, high performance liquid chromatography - mass spectrometry, capillary electrophoresis - mass spectrometry, nuclear magnetic resonance spectrometry (NMR), raman spectroscopy, and infrared spectroscopy.

30. The method of claim 26, wherein the sample is chosen from the group consisting of blood, plasma, urine, saliva, tears, tissue, and cerebral spinal fluid (CSF).

31. The method of claim 26, wherein the gene editing therapeutics are chosen from the group consisting of CRISPR Cas9, CRISPR Cfpl, ZFNs, TALENS, Albumin-based editors, C2cl, C2c3, TevCas9, Archaea Cas9, CasY.l - CasY.6, CasX gRNAs, or Argonaute endonuclease gDNAs, and combinations thereof.

32. The method of claim 26, wherein the antiviral therapeutics are chosen from the group consisting of abacavir, aciclovir, acyclovir, adefovir, amantadine, amprenavir, ampligen, arbidol, atazanavir, atripla, balavir, cidofovir, combivir, dolutegravir, darunavir, delaviridine, didanosine, docosanol, edoxudine, efavirenz, emtricitabine, enfuvirtide, entecavir, ecoliever, famciclovir, fomivirsen, fosamprenavir, foscarnet, fosfonet, fusion inhibitor, ganciclovir, ibacitabine, imunovir, idoxuridine, imiquimod, indinavir, inosine, interferon, interferon type I, interferon type II, interferon type III, lamivudine, lopinavir, loviride, maraviroc, moroxydine, methisazone, nelfinavir, nevirapine, nexavir, nitazoxanide, nucleoside analogues, novir, oseltamivir, peginterferon oc-2a, penciclovir, peramivir, pleconaril, podophyllotoxin, raltegravir, ribavirin, rimantadine, ritonavir, pyramidine, saquinavir, sofosbuvir, telaprevir, tenofovir, tenofovir disoproxil, tipranavir, trifuridine, trizivir, tromantadine, truvada, valaciclovir, valganciclovir, vicriviroc, vidarabine, viramidine, zalcitabine, zanamivir, zidovudine, and combinations thereof.

33. The method of claim 26, further including, if latent virus is activated, the step of treating the individual for the latent virus.

34. A method of detecting latent virus, including the steps of:

taking a sample of an individual;

applying the sample to a diagnostic panel including at least one biomarker indicative of disease; detecting the presence of at least one biomarker;

comparing levels of the biomarker to a baseline; and

determining if latent virus is present in the individual.

35. The method of claim 34, wherein the at least one biomarker is a metabolite chosen from the group consisting of 1,3-dimethylurate, levoglucosan, 1-methylnicotinamide, metabolite 1, 2- hydroxyisobutyrate, 2-oxoglutarate, 3-aminoisobutyrate, 3-hydroxybutyrate, 3-hydroxyisovalerate, 3- indoxylsulfate, 4-hydroxyphenylacetate, 4-hydroxyphenyllactate, 4-pyridoxate, acetate, acetoacetate, acetone, adipate, alanine, allantoin, asparagine, betaine, carnitine, citrate, creatine, creatinine, dimethylamine, ethanolamine, formate, fucose, fumarate, glucose, glutamine, glycine, metabolite 2, metabolite 3, hippurate, histidine, hypoxanthine, isoleucine, lactate, leucine, lysine, mannitol, metabolite 4, metabolite 5, metabolite 6, Ν,Ν-dimethylglycine, O-acetylcarnitine, pantothenate, propylene glycol, pyroglutamate, pyruvate, quinolinate, serine, succinate, sucrose, metabolite 7, taurine, threonine, trigonelline, trimethylamine-N-oxide, tryptophan, tyrosine, uracil, urea, valine, xylose, cis-aconitate, myo-inositol, trans-aconitate, 1-methylhistidine, 3-methylhistidine, ascorbate, phenylacetylglutamine, 4-hydroxyproline, gluconate, galactose, galactitol, galactonate, lactose, phenylalanine, proline betaine, trimethylamine, butyrate, propionate, isopropanol, mannose, 3- methylxanthine, ethanol, benzoate, glutamate, glycerol, guanosine, guanine, xanthine, uric acid, adenosine, inosine, inosinic acid, C0₂, H₂0, N-carboamoyl- -alanine, beta-alanine, ammonia, β- aminoisobutyrate, putrescine, spermidine, spermine, methionine, S-adenosylmethionine, decarboxylated S-adenosylmethionine, arginine, ornithine, putrescine, Nl-acetylspermidine, Nl- acetylspermine, elF5A(Lys), elF5A(Dhp), elF5A(Hpu), NlN2-diacetylspermine, 3-aminopropanal, 3- acetylaminopropanal, acrolein, FDP-lysine protein, threo-Ds-isocitrate, oxalo-succinate, 2-oxo-glutarate, oxalo-acetate, L-glutamate, 2-hydroxy-glutarate, acetyl-CoA, cis-aconitate, D-isocitrate, a-ketoglutarate, succinyl-CoA, malate, (-)O-acetyl-carnitine, itaconate, glycolate, glyoxylate, oxalate, oxalyl-CoA, formyl- CoA, glucose 6-phosphate (G6P), fructose 6-phosphate (F6P), fructose 1,6-biphosphate (F1,6BP), glyceraldehyde 3-phosphate (GADP), dihydroxyacetone phosphate (DHAP), 1,3-bisphosphoglyceric acid (1,3BPG), 3-phosphoglyceric acid (3PG), 2-phosphoglyceric acid (2PG), phosphoenolpyruvic acid (PEP), D-glucose, D-glucono-l,5-lactone, D-gluconate, oc-D-mannose 6-P, D-mannose, D-fructose, D-sorbitol, glycerone-P, sn-glycerol-3P, D-glyceraldehyde, 1,2 propane-diol, 2-hydroxypropionaldehyde, 3-P-serine, 3-P-hydroxypyruvate, D-glycerate, hydroxy pyruvate, L-alanine, L-alanyl-tRNA, L-glutamate, 2- oxoglutarate, L-lactate, D-lactate, adenosine triphosphate (ATP), adenosine diphosphate (ADP), H+, succinate, 0₂, NADH, NAD+, NADP+, NADPH, 6-phosphogluconolatone, 6-phosphogluconate, ribulose-5- phosphate, ribose-5-phosphate, xylulose-5-phosphate, glyceraldehyde 3-phosphate, sedoheptulose 7- phosphate, fructose 6-phosphate, erythrose 4-phosphate, xylulose 5-phosphate, D-ribulose, D-ribitol, D- ribose, L-ribulose, sedoheptulose 1,7P₂, 3-oxo-6-P-hexulose, L-ornithine, carbamoyl phosphate, L- citrulline, argininosuccinate, L-arginine, L-aspartate, adenosine monophosphate (AMP), pyrophosphate, trans-A²-enoyl-CoA, L- -hydroxyacyl CoA, β-ketoacyl CoA, FADH2, acyl-CoA, propionyl-CoA, inosine monophosphate (IMP), xanthosine monophosphate (XMP), guanosine monophosphate (GMP), xanthosine, adenylosuccinate, uridine, uridine monophosphate (UMP), thymidine, thymine, deoxyribose-l-phosphate, deoxythymidine monophosphate (dTMP), deoxycytidine, deoxycytidine monophosphate (dCMP), retinyl palmitate, palmitate, palmityl-CoA, retinoate, β-glucuronide, retinal, β- carotene, retinoic acid, calcidiol, 25-hydroyergocalciferol, calcitriol, methylcobalamin, 5'- deoxyadenosylcobalamin, -CECH, NH₄+, a-ketoglutarate, oxaloacetate, glutamate γ-semialdehyde, Δ¹- pyrroline-5-carboxylate, citrulline, NH₃, /V⁵,/V¹⁰-methyleneTHF, 3-phosphoglycerate, a-ketobutyrate, a- amino- "ketobutyrate, aminoacetone, cysteine sulfinate, β-sulfinylpyruvate, bisulfite, sulfite, sulfate, glutathione, hypotaurine, adenosine 5'-phosphosulfate, 3'-phosphoadenosine 5'-phosphosulfate, homocysteine, oc-keto-P-methylvalerate, -ketoisocaproate, -ketoisovalerate, -methylbutyryl-CoA, tiglyl-CoA, 3-methyl-3-hydroxybutyryl-CoA, 2-methylacetoacetyl-CoA, isovaleryl-CoA, 3-methylcrotonyl- CoA, 3-methylglutaconyl-CoA, 3-hydroxy-3-methylglutaryl-CoA, acetoacetate, isobutyryl CoA, methacrylyl-CoA, 3-hydroxyisobutyryl-CoA, methylmalonic semialdehyde, p-hydroxyphenylpyruvate, homogentisate, 4-maleylacetoacetate, 4-fumarylacetoacetate, fumarate, 3-hydroxytrimethyllysine, 4-/V- trimethylaminobutyraldehyde, γ-butyrobetaine, urocanate, 4-imidazolone-5-propionate, N- formimidoyl-L-glutamate, /V⁵-formimino-tetrahydrofolate, histamine, N-formyl-kynurenine, kynurenine, kynurenate, 3-hydroxykynurenine, anthranilate, 3-hydroxyanthranilate, glutaryl-CoA, acetoacetyl-CoA, and combinations thereof.

36. The method of claim 34, wherein the disease is a virus chosen from the group consisting of human immunodeficiency virus (HIV), herpes simplex virus (HSV-1 and HSV-2), human T-lymohotropic virus (HTLV), John Cunningham virus (JC Virus), vesicular stomatitis virus (VSV), hepatitis C virus (HCV), hepatitis B virus (HBV), Zika virus, Dengue virus, Chikungunya virus, Ebola virus, adeno-associated virus, aichi virus, Australian bat lyssavirus, BK polyomavirus, Banna virus, Barmah forest virus, Bunyamwera virus, Bunyavirus La Crosse, Bunyavirus snowshoe hare, Cercopithecine herpesvirus, Chandipura virus, Cosavirus A, Cowpox virus, Coxsackievirus, Crimean-Congo hemorrhagic fever virus, Dhori virus, Dugbe virus, Duvenhage virus, Eastern equine encephalitis virus, Echovirus, Encephalomyocarditis virus, Epstein-Barr virus, European bat lyssavirus, Hepatitis G virus, Hantaan virus, Hendra virus, Hepatitis A virus, Hepatitis E virus, Hepatitis delta virus, Horsepox virus, human adenovirus, human astrovirus, human coronavirus, human cytomegalovirus, human enterovirus 68, human enterovirus 70, human herpesvirus 6, human herpesvirus 7, human herpes virus 8, human papillomavirus (HPV) 1, HPV 2, HPV 16, HPV 18, human parainfluenza, human parvovirus B19, human respiratory syncytial virus, human rhinovirus, human severe acute respiratory syndrome (SARS) coronavirus, human spumaretrovirus, human torovirus, influenza A virus, influenza B virus, influenza C virus, Isfahan virus, JC polyomavirus, Japanese encephalitis virus, Junin arenavirus, Kl polyomavirus, Kunjin virus, Lagos bat virus, Lake Victoria marburgvirus, Langat virus, Lassa virus, Lordsdale virus, Louping ill virus, lymphocytic choriomeningitis virus, Machupo virus, Mayaro virus, Middle East Respiratory Syndrome (MERS) coronavirus, measles virus, Mengo encephalomyocarditis virus, Merkel cell polyomavirus, Mokola virus, Molluscum contagiousum virus, monkeypox virus, mumps virus, Murray valley encephalitis virus, New York virus, Nipah virus, Norwalk virus, O'nyong-nyong virus, Orf virus, Oropouche virus, Pichinde virus, Poliovirus, Punta toro phlebovirus, Puumala virus, Rabies virus, Rift valley fever virus, Rosavirus A, Ross river virus, Rotavirus A, Rotavirus B, Rotavirus C, Rubella virus, Sagiyama virus, Salivirus A, sandfly fever Sicilian virus, Sapporo virus, Semliki forest virus, Seoul virus, simian foamy virus, simian virus 5, Sindbis virus, Southhampton virus, St. Louis encephalitis virus, tick-borne powassan virus, torque teno virus, Toscana virus, Ulukuniemi virus, vaccinia virus, varicella-zoster virus, variola virus, Venezuelan equine encephalitis virus, vesicular stomatitis virus, western equine encephalitis virus, WU polyomavirus, West Nile virus, Yaba monkey tumor virus, Yaba-like disease virus, and yellow fever virus.

37. The method of claim 34, wherein said detecting step includes using a method chosen from the group consisting of liquid chromatography, gas chromatography, liquid chromatography - mass spectrometry, gas chromatography - mass spectrometry, high performance liquid chromatography - mass spectrometry, capillary electrophoresis - mass spectrometry, nuclear magnetic resonance spectrometry (NMR), raman spectroscopy, and infrared spectroscopy.

38. The method of claim 34, wherein the sample is chosen from the group consisting of blood, plasma, urine, saliva, tears, tissue, and cerebral spinal fluid (CSF).