diagnostic antigen compositions for such methods

The invention relates to a method according to claim 1 and diagnostic compositions according to claim 9.

Porcine reproductive and respiratory syndrome (PRRS) is one of the most devastating viral diseases causing significant economic losses to the swine industry. The agent responsible for this endemic disease is the PRRS virus (PRRSV) which is easily transmitted via infected pigs through urine, semen and fomites, infecting almost exclusively pig monocytes and macrophages.

Porcine reproductive and respiratory syndrome (PRRS) emerged first in the United States of America in 1987 and subsequently spread worldwide. The syndrome is characterized mainly by reproductive failure in pregnant sows, high mortality in piglets and respiratory problems such as dyspnoea. The cause of these symptoms is an enveloped positive single-stranded RNA virus. The PRRSV belongs to the Arteriviridae family and it infects almost exclusively swine monocytes and macrophages.

The genome is approximately 15 kb and has an UTR region on 5' followed by nine open reading frames (ORF): ORF1a, ORF1 b, ORFs2a and 2b, 3 to 7. ORF1a and ORF1 b constitute about 75% of the virus genome encoding for proteins with replicase and polymerase activities, whereas ORF 2 to 5 appear to encode for membrane-associated proteins or glycoproteins (GP). ORF6 encodes for a viral unglycosylated membrane protein M and ORF7 encodes for a highly conserved basic protein, N, that constitutes the nucleocapsid. Mutations take place predominantly in the nsp2 region of ORF 1a and the envelope proteins GP3, GP4 and GP5.

Both Type I and Type II strains have a number of neutralizing and immunodominant epitopes.

Sensitivity to antibody-mediated neutralization was tested for a selected number of antigen regions (AR) by in vitro virus-neutralization tests on alveolar macrophages with peptide- purified antibodies. In addition to the known neutralizing epitope in GP4, one in GP3 turned out to be targets for virus neutralizing antibodies. Since the neutralizing AR in GP3 induced antibodies in a majority of infected pigs, the immunogenicity of this AR was studied extensively, and it was demonstrated that the corresponding region in GP3 of virus strains other than Leiystad Virus (PRRSV type 1) also induces virus neutralizing antibodies. This provides new insights into PRRSV antigenicity, and contributes to the knowledge on protective immunity and immune evasion strategies of the virus (vanhee et al; 2011).

Since ARs GP3 and GP4 were both immunogenic and target for neutralizing antibodies, the serum antibody response against these ARs was further studied (vanhee et al; 2011). While antibodies against GP4 appeared relatively fast upon infection in a majority of the animals, it clearly lasted longer for most animals to develop antibodies against AR GP3. Moreover, antibody titers in sera and alveolar fluids against GP3 were invariably lower than against GP4.

Based on the genetic differences of the virus, it is possible to encounter two main types: European genotype (Leiystad virus or Type I) and American genotype (VR-2332 virus or Type II). These PRRSV genotypes have a nucleotide identity between 55% and 70% when both genomes are compared.

Protection against PRRSV infection is not possible and prevention of virus replication is not mediated by the humoral response alone. Cellular immunity is critical to prevent clinical signs of PRRS.

Nowadays, there are mainly two commercially available modified live vaccines (MLV) on the market; one is composed of an EU type (Porcilis ^® PRRS) and the other one of a US type PRRSV (Ingelvac ^® PRRS). Both vaccines demonstrate an overall efficiency and are widely used for the prevention of PRRSV induced clinical symptoms. PRRS MLV vaccine confers effective genotype/strain-specific protection, but provides only partial protection against genetically heterologous PRRSV. Before the emergence of atypical PRRS, it was generally assumed that the reproductive consequences of infection with PRRSV, including abortion, were due to the direct effect of the virus on the conceptus following transplacental infection. While this is certainly true for many cases of PRRSV- induced reproductive failure, it apparently does not explain all cases, because many litters aborted during epidemics of atypical PRRS were found free of infection. The latter observation indicates that abortion can also be the result of a systemic reaction. The additional observation that abortions were common in herds that had previously been vaccinated raised the question of whether an acute - anamnestic immune response contributed to the clinical picture. If so, there is a possibility that exposure to a virulent field strain of PRRSV other than that used in the vaccine elicits a response different than what would have followed exposure of a naive gilt or sow to the same strain. That is not to say vaccination is not beneficial overall, but it is possible that prevalence of one aspect of reproductive failure, namely abortion, may be slightly higher in vaccinated herds than in non- vaccinated herds. (W.L. Mengeling, K.M. Lager, A C. Vorwald The effect of porcine parvovirus and porcine reproductive and respiratory syndrome virus on porcine reproductive performance. Animal Reproduction Science 60-61 _2000. 199-210)

In such cases, sows often lack neutralizing antibodies against one type of PRRSV. This might be why it is imperative to continuously vaccinate herds with one type of PRRS MLV vaccine since it may displace the other PRRSV type in the herd. In case of a field infection with the counter PRRSV strain, these animals may not be properly protected; cross protection of vaccines against PRRSV of the other type is not fully convincingly shown.

WO 2010/062395 discloses an assay which allows the differentiation of serum antibodies against Type I and/or Type II PRRSV utilizing PRRSV nsp7 from both strains as antigen.

In order to improve vaccine and sanitary management in farms it might be of interest to be aware of a more detailed infectious status of a herd, e.g. to distinguish chronic infections or vaccination from fresh infections.

Such information can be crucial in the further treatment of the animals.

The object of the invention is to provide an improved test method for PRSSV and diagnostic compositions for such method. The object is achieved by a method according to claim 1 and a composition according to claim 9. Embodiments of the invention are addressed to by the subclaims.

According to the invention a method is provided for the detection and classification of PRRSV-infections in swine herds, comprising the incubation of tissue samples taken from the animals with at least one antigen capable to bind a neutralizing antibody against the Type l-virus possibly present in the animal and with at least one antigen capable to bind a neutralizing antibody against the Type ll-virus possibly present in the animal. After incubation it is tested, whether a binding of antibodies against the Type l-virus and/or the Type ll-virus with the antigens has taken place and it is determined from the presence of possible antigen- antibody complexes whether an infection of the PRRSV l-Type and/or PRRSV ll-Type is present in the herd.

The term tissue is used in a broad sense. Apart from its literal meaning it shall also encompass body fluids like blood, plasma, serum or urine.

The antigens used are selected from PRRSV Type I and Type II peptide sequences containing a neutralizing epitope.

Peptides of GP3 Type I (EU) which can be used with the invention include peptides containing a sequence according to SEQ ID NO. 6. Examples for such peptides are apart from a peptide consisting of SEQ ID NO. 6 peptides with sequences according to SEQ IDs NO. 1 and 5.

Peptides of GP3 Type II (US) which can be used with the invention include peptides containing a sequence according to SEQ ID NO. 8. Examples for such peptides are apart from a peptide consisting of SEQ ID NO. 8 peptides with sequences according to SEQ IDs NO. 3 and 9.

Peptides of GP4 Type I (EU) which can be used with the invention include peptides containing a sequence according to SEQ ID NO. 7. A further example for such a peptide apart from a peptide consisting of SEQ ID NO 7 is a peptide with a sequence according to SEQ ID NO. 2.

Peptides of GP4 Type I (US) which can be used with the invention include peptides containing a sequence according to SEQ ID NO. 10. A further example for such a peptide apart from a peptide consisting of SEQ ID NO 10 is a peptide with a sequence according to SEQ ID NO. 4.

A list of the peptides mentioned above is given in the following:

Type I (EU) PRRSV

SEQ ID NO: 1 (GP3 LV 30AA54): ICMPCSTSQA ARGRLEPGRS NMCRKGHDRC

SEQ ID NO: 2 (GP4 LV4) DINCFRPHGV SAAQEKISFG KSSQCREA VGTP

SEQ ID NO. 5 (GP3): STSQAARQRL EPGRNMWCKI GHDRCEER

SEQ ID NO. 6 (GP3):: STSQAARQRL EPGRNMW

SEQ ID NO. 7 (GP4):: FRPHGVSAAQ EKISFGKSS

Type II (US) PRRSV

SEQ ID NO: 3 (GP3 VR): VCPPCLTRQA ATEIYEPGRS LWCRIGYDRC

EEDHDELGFM

SEQ ID NO: 4 (GP4 VR): DISCLRHRDS ASEAIRKIPQ CRTAIGTP

SEQ ID NO. 8 (GP3):: YEPGRSLWCR IGYDRCGEDD

SEQ ID NO. 9 (GP3) : IYEPGRSLWC RIGYDRCGED DHDEL

SEQ ID NO. 10 (GP4).: HRDSASEAIR KIPQCRTAI

The above mentioned peptides are examples. It is clear for a person skilled in the art that further peptides containing sequences according to SEQ IDs NO. 6, 7, 8 or 10, respectively, can have similar antigenic properties which allow the diagnostic testing of animals and thus are also encompassed by the invention. The length of such peptides is limited by their ability to differentiate between PRRSV Type I and II in diagnostic tests. Such ability should be given for peptides not longer than 50 amino acids including the above mentioned sequences.

GP4 and GP3 protein is very well conserved between genotypes and it can be used as a target for extremely specific serological detection by e.g. indirect Enzyme-Linked Inmunosorbent Assay (ELISA), due to its capacity to produce neutralizing antibodies. The above mentioned epitops have been proven to induce the generation of neutralizing antibodies first by vanhee et al; 2011, but previously described by Oleksiewicz MB, Botner A, Toft P, Grubbe T, Nielsen J, Kamstrup S, et al. Emergence of porcine reproductive and respiratory syndrome virus deletion mutants: correlation with the porcine antibody response to a hypervariable site in the ORF 3 structural glycoprotein. Virology 2000; 267: 135-40. Oleksiewicz MB, Botner A, Toft P, Normann P, Storgaard T. Epitope mapping porcine reproductive and respiratory syndrome virus by phage display: the nsp2 fragment of the replicase polyprotein contains a cluster of B-cell epitopes. J Virol 2001 ; 75: 3277-90.

Especially preferred is to use the sequences according to SEQ ID NO: 2, 4 7 and 10 of GP4 which as stated above contains a neutralizing and immunodominant epitope in its N-terminal for both Type I and Type II strains. Although most pigs are able to develop antibodies against both ARs, GP4 clearly shows the highest immunogenicity in the context of infection. There is evidence from recent studies that AR GP4 is susceptible to antibody-mediated selective pressure in vivo, and its high variability confirms that aminoacid changes in this region are generally well tolerated by the virus.

When the GP4 sequences of aminoacids of both Type I and Type II strains are compared ([GenBank: AAA46277.1]; [GenBank: ABB18277.1]), it is observed that the neutralizing epitope is situated within the most variable region of the GP4 protein. Since GP4 shows such great variability in both genotypes, it can be used as a very specific target for the detection of the virus in infected pigs.

As further specified below it is possible to e.g. develop indirect ELISA detection method using a peptide containing a neutralizing epitope in order to discriminate Type 1 and Type 2 PRSSV.

In a further preferred embodiment it is provided that to use a cocktail of peptides, e.g. the above mentioned SEQ ID Nos: 1-4. The use of such a cocktail leads at least in some cases to a broader immune response.

As stated above the main feature of the invention is that method uses antigenic sequences which include neutralizing epitopes. By using such antigens it is possible to detect the presence of neutralizing antibodies possibly present in the animals. However, neutralizing antibodies are only present in animals for a certain period post infection or vaccination. In case that PPRSV is permanent present in a given herd situation (boars) or repeated vaccination (in the following such cases will be referred to as repeated infections) it may happen that in infected animals no neutralizing antibodies are detectable.

For such cases it may be preferable if an additional standard assay for PRRSV is performed, which detects antibodies normally directed against non neutralizing epitops (e.g. GP7). In an infectious or vaccinated situation animals with repeated infection turned positive in such a screening test.

With this embodiment of the method a very detailed classification of the status of possible infections in the herd is possible especially if further information on the herd normally available, like e.g. date of vaccination etc., is taken into account. If e.g. the standard test is positive and the titre of neutralizing antibodies is negative or low this means that there is a chronic infection in the herd. If on the other hand the standard assay is positive and the test for neutralizing antibodies provides a high titre this means that there is a fresh infection in the herd.

Summing up the method according to the invention allows a much more detailed evaluation of the infection status in a herd compared to known assay formats since it considers the humoral immune response against neutralizing epitopes in addition to the information available on the herd. On the basis of such evaluation pork producers can e.g. assess the risk of facing clinical signs of a PRRSV infection despite vaccination and can adapt their vaccination strategy, e.g. consider treating animals with either a commercially available Type I or Type II modified live vaccine. Additionally, the measurement of the neutralizing antibody titre against PRRSV Type I or Type II may also give an indication of the fitness of a herd against potential PRRSV infection if neutralisation AB titre of only one type can be detected but infected with the other one. This is the reason why a high specificity test as described below capable of distinguishing between Type I and Type II in one single run may benefit the PRRSV diagnostic.

The invention is also directed to diagnostic compositions which can be used in the method according to the invention. Such compositions include at least the GP4 sequences indicated above, but can also include further antigenic sequences (GP3). As a rule the sequences are immobilized, e.g. by coating on a plate or coupling to beads. The compositions furthermore include all buffers and controls which normally are present in such compositions. A detailed composition is given in Example 1.

In the following the invention shall be described further in detail by means of figures and examples:

Fig. 1 Illustration of OD 450-620 nm values for different PRRSV sera measured using EU- specific antigen,

Fig. 2 Illustration of OD 450-620 nm values for different PRRSV sera measured using US- specific antigen,

Fig. 3 Illustration of OD 450-620 nm values for different PRRSV sera measured using a combination of further EU-specific antigenic peptides, Fig. 4 Illustration of OD 450-620 nm values for different PRRSV sera measured using a further combination of EU-specific antigenic peptides,

Fig. 5 Illustration of OD 450-620 nm values for different PRRSV sera measured using a combination of further US-specific antigenic peptides,

Fig. 6 Illustration of OD 450-620 nm values for different PRRSV sera measured using a further combination of US-specific antigenic peptides.

Fig. 1 illustrates OD 450-620 nm values for PRRS negative (CH Herds 1 to 4) and PRRSV positive sera samples (Porcilis ^® PRRS and Inlgelvac ^® PRRS vaccinated animals) using a high binding plate coated with 1 μg/ml of GP4_LV4. Stabilcoat had been used for blocking and 0.2% casein in Stabilcoat and PBS 13 1X+ 0.1 % Tween-80 had been used as sample diluent and conjugate buffers, respectively.

Fig. 2 illustrates OD 450-620 nm values for PRRS negative (CH Herds 1 to3) and PRRS positive sera samples (Porcilis ^® PRRS and MLV or Ingelvac ^® PRRS vaccinated Animals) using a high binding plate coated with lOpg/ml of GP4_VR_2332_4. Stabilcoat had been used for blocking and 0.2% casein in Stabilcoat and 0.1 % Tween-80+0.2% Casein in PBS 13 1x had been used as sample diluent and conjugate buffers, respectively.

Figs. 3-6 illustrate the results of tests with combinations of further antigenic peptides on different PRRSV sera. For details see example 11.

Example 1 : Development of an indirect ELISA a) Antibodies

A secondary antibody was used as conjugate for the detection of neutralizing antibodies (Goat anti Pig IgG (Fc) HRP; stock concentration 1 mg/ml [AbD Serotec, AAI4 P]) present in the PRRS samples. b) Antigen

The antigen used for the development of this indirect ELISA was GP4 peptide from the European PRRSV strain and the American PRRSV strain according to SEQ ID NOs: 1 and 2. The Type I peptide (EU) used shall also be designated as GP4_LV4. The stock concentration of this peptide was 3 mg/ml in H ₂ 0. Peptide GP4_VR_2332_4 corresponds to the Type II or US strain and had a stock concentration of 2 mg/ml in H ₂ 0. The optimal coating concentration of GP4_LV4 was 1 pg/ml whereas for GP4_VR_2332_4 was 10 pg/ml. c) Sera samples

Samples of known status have been used for the development of this indirect ELISA. For Type I PRRSV, a panel of serum samples from 34 pigs that had been previously vaccinated with Porcilis ^® PRRS. For Type II PRRSV, serial sera samples were obtained from 20 pigs that had been vaccinated with Ingelvac ^® PRRS MLV. In addition to PRRSV positive samples, 127 PRRSV negative samples from negative control animals were used for validation of the indirect ELISA. These PRRS negative samples were collected from different locations over Switzerland (Bazenheid, Basel, Zurich [ShZh, Zh]) in 2012. All of these samples were also assayed in the Idexx PRRS ELISA. d) Details of indirect ELISA

(i) Coating of ELISA plates: A high binding plate (Greiner Bio-One 762071 -CED) was coated with 100 μΙ of antigen solution per well. Depending of the antigen used for the coating, the final concentration was 1 pg/ml for GP4_LV or 10pg/ml for GP4_VR_2332_4. The coating buffer in which the antigen was diluted in was PBS 13 1x with a pH 9.6. The incubation of the antigen took place at 4 °C without shaking overnight.

(ϋ) Blocking: After antigen incubation overnight, the plate was washed four times with 300 μΙ of Washing Buffer (0.5% Tween-80 [Sigma P8074-500 ml] in PBS 13 1x) using Tecan Hydroflex washer. Next, 200μΙ of Blocking Buffer (StabilCoat Immunoassay Stabilizer [SurModics Prod. Nr. SC01-100]) were added per well. The plate was incubated for 2 hours at room temperature without shaking. After incubation period, the Blocking Buffer was drained and the plate was dried in a 37° C incubator for 2 hours.

(iii) Dilution of sera samples: Before testing, samples were diluted 1 :50. The dilution took place in Sample diluent buffer (0.2% casein in StabilCoat).

(iv) Capture: To each well on the plate, 100 μΙ of the 1 :50 dilution of the serum sample was added. The incubation of the samples took place at room temperature for one hour without shaking. After the incubation period, the plate was washed four times with 300 μΙ of Washing Buffer (0.05% Tween-80 [Sigma P8074-500 ml] in PBS 13 1x) using Tecan Hydroflex washer.

(v) Detection: After washing the plate, 100μΙ of anti Pig IgG (Fc) HRP (20 ng/ml Conjugate Diluent) were added per well. Incubation took place at room temperature for 1 hour without shaking. Next, the plate was washed four times with 300μΙ of Washing Buffer (0.05% Tween-80 in PBS 13 1X) using Tecan Hydroflex washer. After washing, 100μΙ of TMB substrate (SurModics TTMB-1000-01) were added per well. The plate was then incubated at room temperature for 5 minutes without shaking. For stopping the reaction, 100μΙ of Stop buffer solution (0.5M H ₂ S0 ₄ [Fluka 38294]) were added per well. The absorbance of the coloured reaction was measured using Tecan Sunrise (Measurement wavelength: 450 nm; Reference wavelengths: 620 nm; Read mode: normal). e) Determining Cut-Off values

To set negative/positive cut off values, both the mean and the standard deviation of the negative samples only (Bazenheid, Basel, Zurich [ShZh, Zh]) were calculated. Once both values were obtained, the standard deviation was multiplied by a factor of 5; the product of this calculation was added to the negative mean previously calculated.

TABLE 1. Calculation of Cut-Off values

f) Calculation of sensitivity and specificity

The sensitivity is calculated to know the probability that a test will give a positive result when the disease is present and it can be calculated using the following formula and following the scheme above (Table 5):

Sensitivity = (A/A+C) ^* 100

On the other hand, the specificity of an assay will provide information about the probability that a test will give a negative result when the disease is not present. It can be calculated using the formula below and following the scheme above (Table 2):

Specificity = (D/B+D) ^* 100

TABLE 2. Scheme for calculating sensitivity and specificity

Sample Status

Positive Negative

Test Positive A B A+B

Negative C D C+D

A+C B+D Total g) Results

As indicated above animals that were vaccinated with EU or US type as well as PRRSV negative animals were tested in order to calculate the specificity and sensitivity of the assay (Tables 3 and 4 and Figs. 1 and 2) to determine the specificity and sensitivity of the indirect ELISA, a cut-off of 0.17 and 0.32 at herd level was calculated for GP4_LV4 and GP4_VR_2332_4, respectively. With the gathering of all the data, we determined that the specificity and sensitivity of GP4_LV4 was 99.41% and 55.80%, respectively, whereas for GP4_VR_2332_4, the specificity was 98.91% and the sensitivity 45%. For the calculation of the diagnostic specificity, the PRRS positive samples that were negative depending on the GP4 peptide used were considered as negative.

For the ELISA, although the sensitivity is important, it is of higher interest that the assay is specific, since the main objective of this detection method is to be able to correctly classify individuals as disease-free and avoid false positives.

TABLE 3. Results of optimum ELISA conditions for GP4_LV4 (PRRSV Type I)

As one can take from Table 3, no cross detection between EU and US could be observed and only one false positive sample was observed by testing PRRSV negative antibody serum.

TABLE 4. Results of optimum ELISA conditions for GP4_VR_2332_ (PRRSV Type II)

Table 4 shows no cross detection between EU and US and only two false positive were observed by testing PRRSV negative serum. Examples 2-8 and 11 :

Examples 2-8 show the results of ELISA analysing blinded samples derived from different pig herds or sera with known status (example 1 1). The herein described ELISA can also be used for the assessment about the immunological status of a herd related to the presence or absence of neutralization antibodies directed against special epitopes of GP3 and GP4. Further on statements about a fresh or continuous infection situation in a given herd situation can be drawn by consideration the titer level in animals.

Result interpretation for examples 2-8 need additional information alongside the discriminating ELISA e.g. information about the single animal, herd status, and the result of a screening ELISA is needed.

For examples 2-8 and 1 1 the experiments were done in the identical manner as described for Example 1 with the exceptions that the antigens represented combinations of GP3 and GP4 peptides. The used peptide sequences in examples 2-8 are indicated in the following:

Peptides used:

Type I (EU) PRRSV

GP3 LV30AA54 (SEQ ID NO. 1). ICMPCSTSQA ARGRLEPGRS NMCRKGHDRC

GP4 LV4 (SEQ ID NO. 2): DINCFRPHGV SAAQEKISFG KSSQCREA

VGTP

Tvpe II (US)

GP3 VR (SEQ ID NO. 3): VCPPCLTRQA ATEIYEPGRS LWCRIGYDRC

EEDHDELGFM

GP4 VR (SEQ ID NO. 4): DISCLRHRDS ASEAIRKIPQ CRTAIGTP

The additional peptide sequences used in example 11 are indicated in the following:

Type I (EU) PRRSV

GP3 (SEQ ID NO. 5). STSQAARQRL EPGRNMWCKI GHDRCEER

GP3 (SEQ ID NO. 6). STSQAARQRL EPGRNMW

GP4 (SEQ ID NO. 7): FRPHGVSAAQ EKISFGKSS

YEPGRSLWCR IGYDRCGEDD IYEPGRSLWC RIGYDRCGED DHDEL

HRDSASEAIR KIPQCRTAI Example 2: PRRS negative Herd (Nucleus Herd)

Herd Status: Animal tested derived from a boar nucleus herd. Boars will never be vaccinated against PRRSV and are closed meshed measured for the presence of PRRSV.

Animal Status: Animals are predicted to be negative for PRRSV directed antibodies.

Screening ELISA is negative as well as the discrimination ELISA.

Test interpretation: Animals are negative for PRRSV.

In the following the results are summarized in tables 5 and 6.

Example 3: PRRS negative Herd

Herd Status: Unknown. However, boars will never be vaccinated against PRRSV and are closed meshed measured for the presence of PRRSV. Animal Status: Unknown

Screening ELISA is negative as well as the discrimination ELISA.

Test interpretation: Animals are negative for PRRSV.

In the following the results are summarized in tables 7 and 8.

Example 4: Herd with repeated PRRS infection

Herd Status: Herd was positive tested in the past for the presence of PRRSV EU directed antibodies over years. Boars are continuously infected (repeated infections) with PRRSV. Boars will never be vaccinated against PRRSV and are closed meshed measured for the presence of PRRSV.

Animal Status: Unknown

Screening ELISA is positive but not the discrimination ELISA. Test interpretation: Animals losing their capability to establish a neutralising humoral immune response in a continuous, repeated PRRSV infection situation. However, these animals turned positive in a screening ELISA not measuring neutralising antibodies.

These animals, even tested positive in the screening ELISA do not have anymore

Neutralising antibodies, indicating that a considerable proportion of antibodies are not present anymore.

-> Even aware that boars demonstrate only minor clinical signs of a PRRSV infection (e.g. fever) those animals may have a minor resistance capability against a heterologous PRRSV challenge (infection with PRRSV Type II in this assumed case, as animals are infected with EU type PRRSV).

In the following the results are summarized in tables 9 and 10.

Corresponding ELISA Results

Sample Information Discriminatory Reference

No to animals ELISA

and PRRS OD 450nm-620nm Test

Idexx X3

Status

Type I Type II ELISA

(EU) (US)

13-19 Farm with 0.082 0.131 Pos!

seroreactors,

13-22 0.070 0.061 Pos!

Continuous

13-24 EU infected 0.076 0.100 Pos!

herd

13-25 0.043 0.072 Pos!

13-26 0.038 0.087 Pos!

Table 10 Example 5: Repeated EU infected Boar herd, freshly infected with US

Herd Status: Herd was positive tested in the past for the presence of PRRSV EU directed antibodies over years and turned recently positive for US PRRSV as proved by positive US PRRSV PCR results . Boars are continuously infected (repeated infections) with PRRSV. Boars will never be vaccinated against PRRSV and are closed meshed measured for the presence of PRRSV.

Animal Status: Unknown

Screening ELISA is positive and discrimination ELISA too.

Test interpretation: Animals losing their capability to establish a neutralising humoral immune response in a continuous, repeated PRRSV infection situation against EU PRRSV. However, these animals turned positive in the discrimination ELISA for PRRSV Type II (US). These animals tested positive in the screening ELISA.

Titre for US PRRSV are very high (>2 OD in average) indicating that a fresh infection with US PRRSV occurred in the herd. This test interpretation could be confirmed by PCR test results, demonstrating that the infection turned out to be in the viraemic phase.

Animals may have a minor resistance capability against a heterologous PRRSV challenge (infection with PRRSV Type II in this assumed case, as animals are infected with EU type PRRSV). Sows at gestation day 90, vaccinated with one of the MLVs but infected with a counter field PRRSV isolate would be the more profound sub species to prove the limited protection of the animals.

In the following the results are summarized in tables 11 and 12.

Reference Discriminatory Info Animal Site Info

Test ELISA

Idexx X3

Type 1 Type II

(EU) (US)

Neg X Boar Continuous EU

infected

Pos X X herd (minimal 3

years), US positive

Titre* < 0.3 > 1

since January 2013

Table 11 Corresponding ELISA Results

Example 6: Maternal interference or building of first neutralizing antibodies

Herd Status: Piglets four weeks of age. Normally the age one week after vaccination against PRRSV. It is unknown if the sows have been vaccinated or not (based on the discrimination ELISA): It is predicted that the sows have been vaccinated with Porcilis PRRSV (EU PRRSV).

Animal Status: Unknown

Screening ELISA is positive and discrimination ELISA, too.

Test interpretation: Animals are actually too young to establish a humoral immune response against PRRSV. It is likely to assume that maternal interference (transfer of neutralising antibodies from sow to pig via suckling). It might be also possible that some mAB derived from the piglet immune system. Infection with wild PRRSV is unlikely due to the age of the piglets and the low titre measured in the discrimination ELISA.

In the following the results are summarized in tables 13 and 14. Reference Discriminatory Info Animal Site Info

Test ELISA

Idexx X3

Type I Type II

(EU) (US)

Neg X piglets of 4 weeks, unknown fattening

Pos X X

Titre* < 1 < 0.3

Table 13

Corresponding ELISA Results

Example 7: Ingelvac Vaccinated herd (US PRRSV positive)

Herd Status: Piglets are ten weeks of age. Normally, this is the time six weeks after the vaccination against PRRSV normally took place. Pigs should demonstrate an intensive humoral immune response and high titre level are expected.

Animal Status: Unknown

Screening ELISA is positive and discrimination ELISA too.

Test interpretation: Animals are six weeks after vaccination. Based on the fact that only US PRRSV could be detected, with very high titres (average > 1.0 OD), it is likely that These animals have been vaccinated with Ingelvac ^® PRRSV (US PRRSV). In the following the results are summarized in tables 15 and 16.

Corresponding ELISA Results

Sample Informati Discriminatory Reference Test No on to ELISA Idexx X3 ELISA animals OD 450nm-620nm

and

Type I Type II

PRRS

(EU) (US)

Status

13-2738 unknown, 0.024 0.126 Neg

30 kg

13-2743 0.051 0.498 Pos!

13-2744 0.038 0.205 Pos!

13-2748 0.031 0.756 Pos!

13-2749 0.033 0.691 Pos!

13-2753 0.055 2.894 Pos!

13-2754 0.028 0.757 Neg

13-2755 0.030 0.177 Neg

13-2756 0.042 0.297 Pos!

13-2757 0.085 0.405 Neg

13-2761 0.033 2.703 Pos!

13-2762 0.068 2.545 Pos!

13-2763 0.023 0.395 Pos! 13-2764 0.039 0.193 Neg

13-2765 0.063 2.748 Pos!

13-2767 0.047 2.379 Neg

13-2768 0.113 2.788 Pos!

13-2772 0.066 1.031 Pos!

13-2777 0.107 2.769 Pos!

13-2778 0.070 2.783 Pos!

Table 16

Example 8: Pig herd infected with Type I and II (EU and US) of PRRSV

Herd Status: Herd was positive tested in the past for the presence of PRRSV EU directed antibodies over years and turned recently positive for US PRRSV. Boars are continuously infected (repeated infections) with PRRSV. Boars will never be vaccinated against

PRRSV and are closed meshed measured for the presence of PRRSV.

Animal Status: Unknown

Screening ELISA is positive and discrimination ELISA for EU and US. too.

Test interpretation: Animals tested positive in the past for EU PRRSV and very recently for

US PRRSV. These animals tested positive in the screening ELISA.

Titre for US PRRSV are very high (>1 OD in average) indicating that a fresh infection with US PRRSV occurred in the herd. Titre for EU PRRSV are low (<1 OD in average) indicating that an older infection with EU PRRSV occurred in the herd.

-» Old infection with EU PRRSV and fresh infection with US PRRSV

In the following the results are summarized in tables 7 and 18.

Reference Discriminatory Info Animal Site Info

Test ELISA

Idexx X3

Type I Type II

(EU) (US)

Neg Boars

Pos X X X

a e <

Corresponding ELISA Results

Sample Information Discriminatory Reference Test No to animals ELISA Idexx X3 ELISA and PRRS OD 450nm-620nm

Status

Type I Type II

(EU) (US)

Boar 1 Boars, 0.037 0.044 Neg

Boar 2 0.031 0.029 Neg

Boar 3 0.052 0.063 Neg

Boar 4 0.039 0.038 Neg

Boar 5 0.115 2.408 Pos!

Boar 6 0.130 0.958 Pos!

Boar 7 0.030 0.038 Neg

Boar 8 0.035 0.063 Pos!

Boar 9 0.071 1.544 Pos!

Boar 10 0.267 2.584 Pos!

Boar 11 0.084 0.095 Neg

Boar 12 0.125 2.614 Pos!

Boar 13 0.035 0.423 Pos!

Boar 14 2.310 0.964 Pos!

Boar 15 0.440 1.539 Pos!

Boar 16 0.455 1.156 Pos!

Boar 17 0.035 0.044 Pos!

Boar 18 0.041 0.057 Pos!

Boar 19 0.029 0.031 Pos!

Boar 20 0.037 0.036 Neg Boar 21 0.037 0.079 Pos!

Boar 22 0.092 0.257 Pos!

Boar 23 0.057 0.092 Pos!

Boar 24 0.103 1.192 Pos!

Boar 25 0.040 0.053 Pos!

Table

17

Example 9: Results of ELISA assays analyzing serum samples of known PRRS Status

Disciminatory ELISA assays were performed on pig serum samples with known PRRS Status. 32 sera derived of vaccinated pigs (Type I (EU)), 20 sera derived of vaccinated pigs (Type II (US)) and 46 sera of PRRSV negative pigs were analyzed on EU specific peptides (left column) and US specific peptides (right column).

The results are depicted in Table 18.

The first number indicates amount of sample values over cutoff, right number indicates the total number of sample analyzed per cohort. In the 2 last rows the respective specificities and sensitivity is calculated.

Table 18

Example 10: Diagnostic Composition (Kit)

A typical kit which can be used in the method according to the invention includes the components given in table 19: Component Name Description

Component 1 High binding 96-well plate coated with PRRSV Type I / II Test Plate specific peptides as follows:

- row 1 , 3, 5, 7, 9, 11 coated with GP3/GP4 peptides specific for PRRSV Type I (EU)

- row 2, 4, 6, 8, 10 12 coated with GP3/GP4 peptides specific for PRRS Type II (US)

Component 2 Buffer used for diluting serum samples to be analyzed on Sample Diluent the Test Plate (Component 1)

Component 3 Buffer used for rinsing unbound assay components after Washing Fluid (20x) the sample incubation step and conjugate incubation step.

Component 4 Horse radish peroxidase labelled anti-pig antibody used for Conjugate (30x) detection of antibodies bound to PRRSV Type I and Type II peptides.

Component 5 Buffer used for diluting the Conjugate (Component 4)

Conjugate Diluent during the conjugate incubation step.

Component 6 Serum of pig containing high antibodies titer specific for Positive Control EU PRRSV Type I (EU)

Component 7 Serum of pig containing high antibodies titer specific for Positive Control US PRRSV Type II (US)

Component 8 Serum of pig containing low antibodies titer specific for

Weak Positive Control PRRSV Type I (EU)

EU

Component 9 Serum of pig containing low antibodies titer specific for

Weak Positive Control PRRSV Type II (US)

US

Component 10 Serum of pig containing no antibody to the PRRS virus Negative Control

Component 11 Solution used as Enzymatic Substrate for HRP producing a Substrate color reaction

Component 12 Solution used for stopping and stabilizing the color

Stop Solution development

Table 19 Example 11: Performance of cocktails including further GP3 and GP 4 peptides in diagnostic tests

For this example for each case 4 Type I (EU) positive, 4 Type II (US) positive and 4 PRRS negative samples were analyzed by indirect ELISA (as described under example 1 in detail) using different cocktails of antigens. The results are discussed below referring to Figs. 3-6. a) Cocktail of Type I (EU)-specific GP3 and GP4 peptides

In this assay peptides according to SEQ ID NO. 5 (GP3) and SEQ ID NO. 7 (GP4) were used in combination. The results are shown in Fig. 3. One can see that all 4 Type I positive samples showed a clear signal with high intensity while the remaining further samples were identified as clearly negative. b) Cocktail of Type I (EU)-specific GP3 and GP4 peptides

In this assay peptides according to SEQ ID NO. 6 (GP3) and SEQ ID NO. 2 (GP4) were used in combination. The results are shown in Fig. 4. One can see that all 4 Type I positive samples were identified positive with, however, signals of different intensity depending on the sample. The remaining Type II (US) positive and PRRS negative samples showed only weak signals and could still be clearly discriminated as negative. c) Cocktail of Type II (US)-specific GP3 and GP4 peptides

In this assay peptides according to SEQ ID NO. 8 (GP3) and SEQ ID NO. 10 (GP4) were used in combination. The results are shown in Fig. 5. One can see that all 4 Type II positive samples were identified positive with, however, signals of different intensity depending on the sample. The remaining Type I (EU) positive and PRRS negative samples showed only weak signals and could still be clearly discriminated as negative. d) Cocktail of Type II (US)-specific GP3 and GP4 peptides

In this assay peptides according to SEQ ID NO. 9 (GP3) and SEQ ID NO. 10 (GP4) were used in combination. The results are shown in Fig. 6. One can see that all 4 Type II positive samples were identified positive with signals of higher intensity compared to example c. The remaining Type I (EU) positive and PRRS negative samples again showed only weak or no signals and could still be clearly discriminated as negative.