Title:
Moss genes from physcomitrella patens encoding proteins involved in the synthesis of carbohydrates
Document Type and Number:
WIPO Patent Application WO2001044476
Kind Code:
A3
Abstract:
Isolated nucleic acid molecules, designated CMRP nucleic acid molecules, which encode novel CMRPs from Physcomitrella patens are described. The invention also provides antisense nucleic acid molecules, recombinant expression vectors containing CMRP nucleic acid molecules, and host cells and organisms into which the expression vectors have been introduced. The invention still further provides isolated CMRPs, mutated CMRPs, fusion proteins, antigenic peptides and methods for the improvement of production of a desired compound from transformed cells based on genetic engineering of CMRP genes in this organism.
Inventors:
LERCHL JENS (DE)
RENZ ANDREAS (DE)
EHRHARDT THOMAS (DE)
REINDL ANDREAS (DE)
CIRPUS PETRA (DE)
BISCHOFF FRIEDRICH (DE)
FRANK MARKUS (DE)
FREUND ANNETTE (DE)
DUWENIG ELKE (DE)
SCHMIDT RALF-MICHAEL (DE)
RESKI RALF (DE)
RENZ ANDREAS (DE)
EHRHARDT THOMAS (DE)
REINDL ANDREAS (DE)
CIRPUS PETRA (DE)
BISCHOFF FRIEDRICH (DE)
FRANK MARKUS (DE)
FREUND ANNETTE (DE)
DUWENIG ELKE (DE)
SCHMIDT RALF-MICHAEL (DE)
RESKI RALF (DE)
Application Number:
PCT/EP2000/012697
Publication Date:
April 25, 2002
Filing Date:
December 14, 2000
Export Citation:
Assignee:
LERCHL JENS (DE)
RENZ ANDREAS (DE)
EHRHARDT THOMAS (DE)
REINDL ANDREAS (DE)
CIRPUS PETRA (DE)
BISCHOFF FRIEDRICH (DE)
FRANK MARKUS (DE)
FREUND ANNETTE (DE)
DUWENIG ELKE (DE)
SCHMIDT RALF-MICHAEL (DE)
RESKI RALF (DE)
BASF PLANT SCIENCE GMBH (DE)
RENZ ANDREAS (DE)
EHRHARDT THOMAS (DE)
REINDL ANDREAS (DE)
CIRPUS PETRA (DE)
BISCHOFF FRIEDRICH (DE)
FRANK MARKUS (DE)
FREUND ANNETTE (DE)
DUWENIG ELKE (DE)
SCHMIDT RALF-MICHAEL (DE)
RESKI RALF (DE)
BASF PLANT SCIENCE GMBH (DE)
International Classes:
C07K14/415; C12N9/00; C12N15/29; (IPC1-7): C12N15/29; C07K14/415; C07K16/16; C07K16/40; C12P19/00; G01N33/573; G01N33/68
Domestic Patent References:
| WO1999029875A2 | 1999-06-17 | |||
| WO2000022092A2 | 2000-04-20 |
Foreign References:
| US5516694A | 1996-05-14 |
Other References:
KRUSE S ET AL: "An open reading frame (ycf11) is evolutionary conserved from cyanobacteria to the plastid DNAs of archegoniates and gymnosperms, is modified in the plastid DNAs of dicots, and is not plastome encoded in monocots.", JOURNAL OF PLANT PHYSIOLOGY, vol. 146, no. 3, 1995, pages 258 - 262, XP001015998, ISSN: 0176-1617
DATABASE EMBL 11 November 1999 (1999-11-11), BONIN, C.P. ET AL.: "Arabidopsis thaliana GDP-D-mannose 4,6-dehydratase (GMD1) mRNA, complete cds.", XP002176495
DATABASE EMBL 15 January 1999 (1999-01-15), SATO, S. ET AL.: "Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1L20.", XP002176496
DATABASE EMBL 17 September 1999 (1999-09-17), LIN, X. ET AL.: "Arabidopsis thaliana chromosome 1 BAC T18K17 genomic sequence, complete sequence.", XP002176497
DATABASE EMBL 1 September 1999 (1999-09-01), MAHAIRAS, G.G. ET AL.: "HS_5500_A2_E01 SP6e Human Male BAC Library Homo sapiens genomic clone Plate=1076 Col=2 Row=I, genomic survey sequence.", XP002176498
DATABASE EMBL 28 September 1999 (1999-09-28), KIM, D. ET AL.: "T134022 Soybean RFLP probe Glycine max genomic clone A890, genomic survey sequence.", XP002176499
DATABASE EMBL 17 June 1999 (1999-06-17), BEVAN, M ET AL.: "Arabidopsis thaliana DNA chromosome 4, BAC clone T16L4 (ESSA project).", XP002176500
DATABASE EMBL 1 December 1999 (1999-12-01), SHOEMAKER, R. ET AL.: "sf07b08.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-1552 5' similar to TR:Q9ZR10 Q9ZR10 PUTATIVE XYLOGLUCAN ENDOTRANSGLYCOSYLASE. ;, mRNA sequence.", XP002176501
OKAZAWA KAZUHIDE ET AL: "Molecular cloning and cDNA sequencing of endoxyloglucan transferase, a novel class of glycosyltransferase that mediates molecular grafting between matrix polysaccharides in plant cell walls.", JOURNAL OF BIOLOGICAL CHEMISTRY, vol. 268, no. 34, 1993, pages 25364 - 25368, XP002176491, ISSN: 0021-9258
SAAB IMAD N ET AL: "Complete cDNA and genomic sequence encoding a flooding-responsive gene from maize (Zea mays L.) homologous to xyloglucan endotransglycosylase.", PLANT PHYSIOLOGY (ROCKVILLE), vol. 108, no. 1, 1995, pages 439 - 440, XP002176492, ISSN: 0032-0889
DATABASE EMBL 16 March 1999 (1999-03-16), SHOEMAKER, R. ET AL.: "sa38f08.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1600 5' similar to TR:P93671 P93671 XYLOGLUCAN ENDOTRANSGLYCOSYLASE ;, mRNA sequence.", XP002176502
HRMOVA MARIA ET AL: "Barley beta-D-glucan exohydrolases with beta-D-glucosidase activity: Purification, characterization, and determination of primary structure from a cDNA clone.", JOURNAL OF BIOLOGICAL CHEMISTRY, vol. 271, no. 9, 1996, pages 5277 - 5286, XP002176493, ISSN: 0021-9258
SCHUNMANN P H D ET AL: "Expression of XET-related genes and its relation to elongation in leaves of barley (Hordeum vulgare L.).", PLANT CELL AND ENVIRONMENT, vol. 20, no. 12, December 1997 (1997-12-01), pages 1439 - 1450, XP001016147, ISSN: 0140-7791
DATABASE EMBL 12 May 1998 (1998-05-12), KOTANI, H. ET AL.: "Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9I9.", XP002176503
DATABASE EMBL 2 March 2000 (2000-03-02), QUATRANO, R. ET AL.: "ga38a12.y1 Moss EST library PPU Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPU040523 5' similar to TR:P93672 P93672 XYLOGLUCAN ENDOTRANSGLYCOSYLASE ;, mRNA sequence.", XP002176504
DATABASE EMBL 2 March 2000 (2000-03-02), QUATRANO, R. ET AL.: "ga38g12.y1 Moss EST library PPU Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPU040823 5', mRNA sequence.", XP002176505
BONIN CHRISTOPHER P ET AL: "A bifunctional epimerase-reductase acts downstream of the MUR1 gene product and completes the de novo synthesis of GDP-L-fucose in Arabidopsis.", PLANT JOURNAL, vol. 21, no. 5, March 2000 (2000-03-01), pages 445 - 454, XP002176494, ISSN: 0960-7412
DATABASE EMBL 15 February 2000 (2000-02-15), SHOEMAKER, R ET AL.: "sh06f11.y1 Gm-c1016 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1016-4006 5' similar to TR:P93031 P93031 GDP-D-MANNOSE-4,6-DEHYDRATASE. ;, mRNA sequence.", XP002176507
DATABASE EMBL 2 March 2000 (2000-03-02), QAUTRANO, R. ET AL.: "ga37d03.y1 Moss EST library PPU Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPU040206 5' similar to TR:Q42835 Q42835 BETA-D-GLUCAN EXOHYDROLASE, ISOENZYME EXOII ;, mRNA sequence.", XP002176508
DATABASE EMBL 11 November 1999 (1999-11-11), BONIN, C.P. ET AL.: "Arabidopsis thaliana GDP-D-mannose 4,6-dehydratase (GMD1) mRNA, complete cds.", XP002176495
DATABASE EMBL 15 January 1999 (1999-01-15), SATO, S. ET AL.: "Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1L20.", XP002176496
DATABASE EMBL 17 September 1999 (1999-09-17), LIN, X. ET AL.: "Arabidopsis thaliana chromosome 1 BAC T18K17 genomic sequence, complete sequence.", XP002176497
DATABASE EMBL 1 September 1999 (1999-09-01), MAHAIRAS, G.G. ET AL.: "HS_5500_A2_E01 SP6e Human Male BAC Library Homo sapiens genomic clone Plate=1076 Col=2 Row=I, genomic survey sequence.", XP002176498
DATABASE EMBL 28 September 1999 (1999-09-28), KIM, D. ET AL.: "T134022 Soybean RFLP probe Glycine max genomic clone A890, genomic survey sequence.", XP002176499
DATABASE EMBL 17 June 1999 (1999-06-17), BEVAN, M ET AL.: "Arabidopsis thaliana DNA chromosome 4, BAC clone T16L4 (ESSA project).", XP002176500
DATABASE EMBL 1 December 1999 (1999-12-01), SHOEMAKER, R. ET AL.: "sf07b08.y1 Gm-c1027 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1027-1552 5' similar to TR:Q9ZR10 Q9ZR10 PUTATIVE XYLOGLUCAN ENDOTRANSGLYCOSYLASE. ;, mRNA sequence.", XP002176501
OKAZAWA KAZUHIDE ET AL: "Molecular cloning and cDNA sequencing of endoxyloglucan transferase, a novel class of glycosyltransferase that mediates molecular grafting between matrix polysaccharides in plant cell walls.", JOURNAL OF BIOLOGICAL CHEMISTRY, vol. 268, no. 34, 1993, pages 25364 - 25368, XP002176491, ISSN: 0021-9258
SAAB IMAD N ET AL: "Complete cDNA and genomic sequence encoding a flooding-responsive gene from maize (Zea mays L.) homologous to xyloglucan endotransglycosylase.", PLANT PHYSIOLOGY (ROCKVILLE), vol. 108, no. 1, 1995, pages 439 - 440, XP002176492, ISSN: 0032-0889
DATABASE EMBL 16 March 1999 (1999-03-16), SHOEMAKER, R. ET AL.: "sa38f08.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1600 5' similar to TR:P93671 P93671 XYLOGLUCAN ENDOTRANSGLYCOSYLASE ;, mRNA sequence.", XP002176502
HRMOVA MARIA ET AL: "Barley beta-D-glucan exohydrolases with beta-D-glucosidase activity: Purification, characterization, and determination of primary structure from a cDNA clone.", JOURNAL OF BIOLOGICAL CHEMISTRY, vol. 271, no. 9, 1996, pages 5277 - 5286, XP002176493, ISSN: 0021-9258
SCHUNMANN P H D ET AL: "Expression of XET-related genes and its relation to elongation in leaves of barley (Hordeum vulgare L.).", PLANT CELL AND ENVIRONMENT, vol. 20, no. 12, December 1997 (1997-12-01), pages 1439 - 1450, XP001016147, ISSN: 0140-7791
DATABASE EMBL 12 May 1998 (1998-05-12), KOTANI, H. ET AL.: "Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9I9.", XP002176503
DATABASE EMBL 2 March 2000 (2000-03-02), QUATRANO, R. ET AL.: "ga38a12.y1 Moss EST library PPU Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPU040523 5' similar to TR:P93672 P93672 XYLOGLUCAN ENDOTRANSGLYCOSYLASE ;, mRNA sequence.", XP002176504
DATABASE EMBL 2 March 2000 (2000-03-02), QUATRANO, R. ET AL.: "ga38g12.y1 Moss EST library PPU Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPU040823 5', mRNA sequence.", XP002176505
BONIN CHRISTOPHER P ET AL: "A bifunctional epimerase-reductase acts downstream of the MUR1 gene product and completes the de novo synthesis of GDP-L-fucose in Arabidopsis.", PLANT JOURNAL, vol. 21, no. 5, March 2000 (2000-03-01), pages 445 - 454, XP002176494, ISSN: 0960-7412
DATABASE EMBL 15 February 2000 (2000-02-15), SHOEMAKER, R ET AL.: "sh06f11.y1 Gm-c1016 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1016-4006 5' similar to TR:P93031 P93031 GDP-D-MANNOSE-4,6-DEHYDRATASE. ;, mRNA sequence.", XP002176507
DATABASE EMBL 2 March 2000 (2000-03-02), QAUTRANO, R. ET AL.: "ga37d03.y1 Moss EST library PPU Physcomitrella patens cDNA clone PEP_SOURCE_ID:PPU040206 5' similar to TR:Q42835 Q42835 BETA-D-GLUCAN EXOHYDROLASE, ISOENZYME EXOII ;, mRNA sequence.", XP002176508
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