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Title:
A POLYPEPTIDE COMPRISING THE AMINO ACID OF AN N-TERMINAL CHOLINE BINDING PROTEIN A TRUNCATE, VACCINE DERIVED THEREFROM AND USES THEREOF
Document Type and Number:
WIPO Patent Application WO/1999/051188
Kind Code:
A2
Abstract:
This invention provides an isolated polypeptide comprising an amino acid sequence of an N-terminal choline binding protein A truncate in which the amino acid sequence is set forth in any of SEQ ID NOS: 1,3-7, or 9-11, including fragments, mutants, variants, analogs, or derivatives, thereof. Also, this invention provides isolated polypeptides comprising an amino acid sequence of a N-terminal choline binding protein A truncate, wherein the amino acid is set forth in SEQ ID NO 24, wherein the polypeptide retains its native tertiary structure and methods of preparation. This invention provides an isolated polypeptide comprising an amino acid sequence of an N-terminal choline binding protein A truncate, wherein the polypeptide has lectin activity and does not bind to choline. This invention provides an isolated immunogenic polypeptide comprising an amino acid sequence of an N-terminal choline binding protein A truncate. This invention provides an isolated nucleic acid encoding a polypeptide comprising an amino acid sequence of N-terminal choline binding protein A truncate. Lastly, this invention provides pharmaceutical compositions, vaccines, and diagnostic and therapeutic methods of use.

Inventors:
TUOMANEN ELAINE I (US)
MASURE H ROBERT (US)
WIZEMANN THERESA M (US)
JOHNSON LESLIE SYDNOR (US)
KOENIG SCOTT (US)
Application Number:
PCT/US1999/007669
Publication Date:
October 14, 1999
Filing Date:
April 07, 1999
Export Citation:
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Assignee:
ST JUDE CHILDRENS RES HOSPITAL (US)
MEDIMMUNE INC (US)
TUOMANEN ELAINE I (US)
MASURE H ROBERT (US)
WIZEMANN THERESA M (US)
JOHNSON LESLIE SYDNOR (US)
KOENIG SCOTT (US)
International Classes:
C12N15/00; A61K39/09; A61K39/395; A61K48/00; A61P11/00; A61P31/04; C07K14/315; C07K16/12; A61K38/00; A61K39/00; (IPC1-7): A61K/
Domestic Patent References:
WO1997041151A21997-11-06
WO1997009994A11997-03-20
WO1998021337A21998-05-22
WO1998018930A21998-05-07
WO1999051187A21999-10-14
WO1999051266A21999-10-14
Attorney, Agent or Firm:
Jackson, David A. (411 Hackensack Avenue Hackensack, NJ, US)
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Claims:
WHAT IS CLAIMED IS:
1. An isolated polypeptide comprising an amino acid sequence of a Nterminal choline binding protein A truncate.
2. The isolated polypeptide of claim 1, wherein the amino acid sequence is set forth in SEQ ID NO 1, including fragments, mutants, variants, analogs, or derivatives, thereof.
3. The isolated polypeptide of claim 1, wherein the amino acid sequence is set forth in SEQ ID NO 3, including fragments, mutants, variants, analogs, or derivatives, thereof.
4. The isolated polypeptide of claim 1, wherein the amino acid sequence is set forth in SEQ ID NO 6.
5. The isolated polypeptide of claim 1, wherein the amino acid sequence is set forth in SEQ ID NO 7, including fragments, mutants, variants, analogs, or derivatives, thereof.
6. The isolated polypeptide of claim 1, wherein the amino acid sequence is set forth in SEQ ID NO 9, including fragments, mutants, variants, analogs, or derivatives, thereof.
7. An isolated polypeptide comprising an amino acid sequence of a Nterminal choline binding protein A truncate having the amino acid as set forth in SEQ ID NO 24, wherein the polypeptide exhibits its tertiary structure.
8. The isolated polypeptide of claim 7, wherein the tertiary structure corresponds to that present in the native protein.
9. The isolated polypeptide of claim 7, wherein the polypeptide is made by cleaving a full length choline binding protein A with hydroxylamine, wherein the hydroxylamine cleaves the choline binding protein A at amino acid 475 thereby creating the Nterminal choline binding protein A truncate.
10. An isolated analog of the polypeptide of claim 1.
11. An isolated polypeptide according to claim 10, wherein the analog comprises the amino acid sequence having an Nterminal methionine or an Nterminal polyhistidine.
12. The isolated polypeptide according to claim 1, wherein said fragments are proteolytic digestion products of the polypeptide.
13. An isolated polypeptide comprising an amino acid sequence of a Nterminal choline binding protein A truncate, wherein the polypeptide has lectin activity and does not bind to choline.
14. An isolated immunogenic polypeptide comprising an amino acid sequence of a Nterminal choline binding protein A truncate.
15. The immunogenic polypeptide of claim 14, wherein the amino acid sequence is set forth in SEQ ID NO 1, including fragments, mutants, variants, analogs, or derivatives, thereof.
16. The immunogenic polypeptide of claim 14, wherein the amino acid sequence is set forth in SEQ ID NO 3, including fragments, mutants, variants, analogs, or derivatives, thereof.
17. The immunogenic polypeptide of claim 14, wherein the amino acid sequence is set forth in SEQ ID NO 7, including fragments, mutants, variants, analogs, or derivatives, thereof.
18. The immunogenic polypeptide of claim 14, wherein the amino acid sequence is set forth in SEQ ID NO 9, including fragments, mutants, variants, analogs, or derivatives, thereof.
19. An isolated nucleic acid encoding a polypeptide comprising an amino acid sequence of a Nterminal choline binding protein A truncate.
20. The isolated nucleic acid of claim 19, wherein the nucleic acid is set forth in SEQ ID NO 12, including fragments, mutants, variants, analogs, or derivatives, thereof.
21. The isolated nucleic acid of claim 19, wherein the nucleic acid is set forth in SEQ ID NO 14, including fragments, mutants, variants, analogs, or derivatives, thereof.
22. The isolated nucleic acid of claim 19, wherein the nucleic acid is set forth in SEQ ID NO 17, including fragments, mutants, variants, analogs, or derivatives, thereof.
23. The isolated nucleic acid of claim 19, wherein the nucleic acid is set forth in SEQ ID NO 19, including fragments, mutants, variants, analogs, or derivatives, thereof.
24. The isolated nucleic acid of claim 19, wherein the nucleic acid is DNA.
25. The isolated nucleic acid of claim 19, wherein the nucleic acid is cDNA.
26. The isolated nucleic acid of claim 19, wherein the nucleic acid is genomic DNA.
27. The isolated nucleic acid of claim 19, wherein the nucleic acid is RNA.
28. An isolated nucleic acid of claim 19 operatively linked to a promoter of RNA transcription.
29. A vector which comprises the nucleic acid molecule of claim 19.
30. The vector of claim 29, wherein the promoter comprises a bacterial, yeast, insect or mammalian promoter.
31. The vector of claim 30, wherein the vector is a plasmid, cosmid, yeast artificial chromosome (YAC), bacteriophage or eukaryotic viral DNA.
32. A host vector system for the production of a polypeptide which comprises the vector of claim 30 in a suitable host cell.
33. The host vector system of claim 32, wherein the suitable host cell comprises a prokaryotic or eukaryotic cell.
34. A cell line comprising the nucleic acid of claim 19.
35. A method of obtaining a polypeptide in purified form which comprises: (a) introducing the vector of claim 19 into a suitable host cell; (b) culturing the resulting host cell so as to produce the polypeptide; (c) recovering the polypeptide produced in step (b); and (d) purifying the polypeptide so recovered in step (c).
36. An antibody capable of specifically binding to the polypeptide of claim 1 or 7.
37. The antibody of claim 36, wherein the antibody is a monoclonal antibody.
38. The antibody of claim 36, wherein the antibody is a polyclonal antibody.
39. The antibody of claim 36, wherein the antibody is a chimeric (bispecific) antibody.
40. A pharmaceutical composition comprising an amount of the polypeptide of claim 1 and a pharmaceutically acceptable carrier or diluent.
41. A method of inducing an immune response in a subject which has been exposed to or infected with a pneumococcal bacterium comprising administering to the subject an amount of the pharmaceutical composition of claim 40, thereby inducing an immune response.
42. A method for preventing infection by a pneumococcal bacterium in a subject comprising administering to the subject an amount of the pharmaceutical composition of claim 40 effective to prevent pneumococcal bacterium attachment, thereby preventing infection by a pneumococcal bacterium.
43. The method of claim 42, wherein the pharmaceutical composition is delivered to the respiratory tract or nasopharynx.
44. A method for preventing infection by a pneumococcal bacterium in a subject comprising administering to the subject an amount of a pharmaceutical composition comprising the antibody of claim 36 and a pharmaceutically acceptable carrier or diluent, thereby preventing infection by a pneumococcal bacterium.
45. A vaccine which comprises the polypeptide of Claim 1 and a pharmaceutically acceptable adjuvant or carrier.
46. The vaccine of Claim 45, wherein the polypeptide has the amino acid sequence as set forth in any of SEQ ID NOS: 1,37, 911,22, and 23.
47. The vaccine of Claim 45 wherein the polypeptide comprises an amino acid sequence of a Nterminal choline binding protein A truncate as set forth in Figure 2.
48. A vaccine which comprises the polypeptide having the amino acid sequence which comprises a conserved region as set forth in Figure 2 and a pharmaceutically acceptable adjuvant or carrier.
49. The vaccine of Claim 48 wherein the conserved region is selected from amino acid sequence 158 to 172; 300 to 321; 331 to 339; 355 to 365; 367 to 374; 379 to 389; 409 to 427; and 430 to 447.
50. A vaccine comprising an isolated nucleic acid encoding the polypeptide of Claim 1 and a pharmaceutically acceptable adjuvant or carrier.
51. A vaccine comprising an isolated nucleic acid of Claim 19 and a pharmaceutically acceptable adjuvant or carrier.
52. A vaccine comprising the vector of Claim 29 and a pharmaceutically acceptable adjuvant or carrier.
53. A method for treating a subject infected with or exposed to pneumococcal bacterium comprising administering to the subject a therapeutically effective amount of the vaccine of any of Claims 4551 or 52, thereby treating the subject.
Description:
INTERNATIONAL SEARCH REPORT lnterr lal Appl (caSon No PCT/US 99/07669 C. (Continuation) DOCUMENTS CONSIDERED TO BE RELEVANT Calegory รง Citalbn of document, with indication, where appropriate, of the relevant passages Relevant to claim No. X, P WO 98 18930 A (HUMAN GENOME SCIENCES INC 1-53 ; CHOI GIL H (US); HROMOCKYJ ALEX (US); J) 7 May 1998 (1998-05-07) page 3, line 15-page 6, line 21 E WO 99 51187 A (TUOMANEN ELAINE I; MASURE H 1-53 ROBERT (US); ST JUDE CHILDRENS RES HOS) 14 October 1999 (1999-10-14) page 3, line 11-page 4, line 24 E WO 99 51266 A (MEDIMMUNE INC) 1-53 14 October 1999 (1999-10-14) page 6, line 13-page 15, line 5 INTERNATIONAL SEARCH REPORT International Application No. PCTAJS 99 D7669 FURTHER INFORMATION CONTINUE FROM PCMSA/210 Continuation of Box I. 1 Although claims 41-44,53 are directed to a method of treatment of the human/animal body, the search has been carried out and based on the alleged effects of the compound/composition. Continuation of Box I. 1 Claims Nos.: 41-44,53 Rule 39.1 (iv) PCT-Method for treatment of the human or animal body by therapy INTERNATIONAL SEARCH REPORT rnten lalApplicationNo Information on patent family members PCT/US 99/07669 Patent document Publication Patent family Publication cited in search report date member (s) date WO 9741151 A 06-11-1997 AU 2818297 A 19-11-1997 EP 0912608 A 06-05-1999 JP 2000511411 T 05-09-2000 WO 9709994 A 20-03-1997 AU 2362699 A 01-07-1999 AU 703434 B 25-03-1999 AU 7239296 A 01-04-1997 CA 2232033 A 20-03-1997 EP 0946188 A 06-10-1999 FI 980561 A 13-05-1998 JP 11513371 T 16-11-1999 NO 981169 A 15-05-1998 NO 981169 A 15-05-1998 WO 9821337 A 22-05-1998 AU 5355398 A 03-06-1998 EP 0942984 A 22-09-1999 EP 0942984 A 22-09-1999 WO 9818930 A 07-05-1998 AU 5194598 A 22-05-1998 AU 6909098 A 22-05-1998 EP 0942983 A 22-09-1999 EP 0941335 A 15-09-1999 W0 9818931 A 07-05-1998 WO 9818931 A 07-05-1998 WO 9951187 A 14-10-1999 AU 3479699 A 25-10-1999 AU 3479799 A 25-10-1999 W0 9951188 A 14-10-1999 WO 9951188 A 14-10-1999 WO 9951266 A 14-10-1999 AU 3386999 A 25-10-1999 AU 3479699 A 25-10-1999 AU 3479799 A 25-10-1999 WO 9951188 A 14-10-1999