Title:
PRIMER SET, PROBE, KIT, AND METHOD FOR DETECTING MYCOBACTERIUM KANSASII
Document Type and Number:
WIPO Patent Application WO/2018/135560
Kind Code:
A1
Abstract:
The present invention provides a novel means for species-specifically detecting M. kansasii. This primer set includes: a first primer that includes a polynucleotide including at the 3' end a base sequence A' identical or homologous to a base sequence A that is a partial base sequence of the 5' end of a target region including all or part of a first base sequence shown by SEQ ID NOS: 1, 9, 11, 13, 15, 2, 10, 12, 14, or 16 in the genomic DNA of Mycobacterium kansasii or a second base sequence complementary to the first base sequence; and a second primer that includes a polynucleotide including at the 3' end a base sequence B' identical or homologous to a complementary base sequence of a base sequence B that is a partial base sequence at the 3' end of the target region.
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Inventors:
MIYAMOTO SHIGEHIKO (JP)
SANO SOTARO (JP)
TOMONO JUN (JP)
JIKIHARA TAKAAKI (JP)
HATA HIROYUKI (JP)
KAWAI AKIKO (JP)
SANO SOTARO (JP)
TOMONO JUN (JP)
JIKIHARA TAKAAKI (JP)
HATA HIROYUKI (JP)
KAWAI AKIKO (JP)
Application Number:
PCT/JP2018/001325
Publication Date:
July 26, 2018
Filing Date:
January 18, 2018
Export Citation:
Assignee:
KANEKA CORP (JP)
KYOKUTO PHARMACEUTICAL IND CO LTD (JP)
KYOKUTO PHARMACEUTICAL IND CO LTD (JP)
International Classes:
C12N15/09; C12N1/20; C12Q1/04; C12Q1/68
Domestic Patent References:
WO2006121134A1 | 2006-11-16 | |||
WO2012070618A1 | 2012-05-31 |
Foreign References:
JPH11155589A | 1999-06-15 | |||
JP2001128679A | 2001-05-15 | |||
JPH1057098A | 1998-03-03 | |||
JP2009039103A | 2009-02-26 | |||
JPH0630796A | 1994-02-08 | |||
JPH01155589A | 1989-06-19 | |||
JP2017007871A | 2017-01-12 |
Other References:
AKAMATU, NORIHIKO: "Rapid and accurate detection of mycobacterium kansasii in sputum by second-step PCR following COBAS AMPLICOR PCR", THE JOURNAL OF THE JAPANESE SOCIETY FOR CLINICAL MICROBIOLOGY, vol. 20, no. 2, 2010, pages 125 - 129, XP055617200, ISSN: 0917-5059
STRAPAGIEL, D. ET AL.: "Draft genome sequences of mycobacterium kansasii strains 1010001454, 1010001458, 1010001468, 101001493, 101001495, and 1010001469, isolated from environmental sources", GENOME ANNOUNCEMENTS, vol. 4, no. 3, 2 June 2016 (2016-06-02), pages 1 - 2, XP055506754, ISSN: 2169-8287
RICHTER, E. ET AL.: "Identification of mycobacterium kansasii by using a DNA probe (AccuProbe) and molecular techniques", JOURNAL OF CLINICAL MICROBIOLOGY, vol. 37, no. 4, April 1999 (1999-04-01), pages 964 - 970, XP055506760, ISSN: 0095-1137
KIM H., INT. J. SYST. EVOL. MICROBIOL., vol. 55, 2005, pages 1649 - 1656
THE JOURNAL OF THE JAPANESE SOCIETY FOR CLINICAL MICROBIOLOGY, vol. 20, no. 2, 2010, pages 125 - 129
J. CLIN. MICROBIOL., vol. 29, no. 10, October 1991 (1991-10-01), pages 2125 - 2129
J. GEN. MICROBIOL., vol. 136, no. 9, September 1990 (1990-09-01), pages 1915 - 20
GENOME ANNOUNC, vol. 4, no. 3, 2 June 2016 (2016-06-02), pages e00456 - 16
ALTSCHUL ET AL., NUC. ACIDS. RES., vol. 25, 1977, pages 3389 - 3402
ALTSCHUL ET AL., J. MOL. BIOL., vol. 215, 1990, pages 403 - 410
GREENSAMBROOK: "Molecular Cloning", 2012, COLD SPRING HARBOR LABORATORY PRESS
STRAPAGIEL, D. ET AL.: "Draft genome sequences of mycobacterium kansasii strains 1010001454, 1010001458, 1010001468, 101001493, 101001495, and 1010001469, isolated from environmental sources", GENOME ANNOUNCEMENTS, vol. 4, no. 3, 2 June 2016 (2016-06-02), pages 1 - 2, XP055506754, ISSN: 2169-8287
RICHTER, E. ET AL.: "Identification of mycobacterium kansasii by using a DNA probe (AccuProbe) and molecular techniques", JOURNAL OF CLINICAL MICROBIOLOGY, vol. 37, no. 4, April 1999 (1999-04-01), pages 964 - 970, XP055506760, ISSN: 0095-1137
KIM H., INT. J. SYST. EVOL. MICROBIOL., vol. 55, 2005, pages 1649 - 1656
THE JOURNAL OF THE JAPANESE SOCIETY FOR CLINICAL MICROBIOLOGY, vol. 20, no. 2, 2010, pages 125 - 129
J. CLIN. MICROBIOL., vol. 29, no. 10, October 1991 (1991-10-01), pages 2125 - 2129
J. GEN. MICROBIOL., vol. 136, no. 9, September 1990 (1990-09-01), pages 1915 - 20
GENOME ANNOUNC, vol. 4, no. 3, 2 June 2016 (2016-06-02), pages e00456 - 16
ALTSCHUL ET AL., NUC. ACIDS. RES., vol. 25, 1977, pages 3389 - 3402
ALTSCHUL ET AL., J. MOL. BIOL., vol. 215, 1990, pages 403 - 410
GREENSAMBROOK: "Molecular Cloning", 2012, COLD SPRING HARBOR LABORATORY PRESS
Attorney, Agent or Firm:
HIRAKI & ASSOCIATES (JP)
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