DUAL-PLANE DIGITAL HOLOGRAPHIC MICROSCOPY

Cross Reference to Related Applications

[0001] This application is related to U.S. Patent No. 7,738,047 and U.S. Patent No. 7,880,820, entitled "Systems and Methods of All-Optical Fourier Phase Contrast Imaging using Dye Doped Liquid Crystals," the entire contents of which are incorporated herein by reference.

Statement Regarding Federally Sponsored Research or Development

[0002] This invention was made with government support under 1 R21 RR024429-01 Al awarded by National Institute of Health. The government has certain rights in the invention.

Background

Field

[0003] The disclosed subject matter generally relates to digital holographic microscopy.

Discussion of Related Art

[0004] Numerous biological samples, including live cells, are generally transparent under visible-light illumination and behave essentially as phase objects. Phase objects can only alter the phase component of optical waves, not their amplitude component. Hence, the phase structure of these objects are difficult to see with naked eyes or ordinary imaging techiques, which are only sensitive to the amplitude component of optical waves.

[0005] Phase imaging techniques can record phase structure of objects. For example, techniques such as Zemike's phase contrast (PC) method and Nomarski's differential interference contrast (DIC) method can visualize the phase component of optical waves by transforming the phase information into amplitude contrast. However the phase information provided by these techniques is only qualitative. As such, these techniques cannot be used to measure certain biological parameters of specimens, such as intracellular refractive indices, because measuring such biological parameters requires measuring phase structure of the biological specimen quantitatively.

[0006] These issues can be addressed using digital holographic microscopy (DHM). DHM is a non-destructive, full-field, label-free method of measuring the amplitude structure and the quantitative phase structure of microscopic specimens. In DHM, optical components are configured in such a way that a portion of coherent optical waves passes through a microscopic specimen, whereas the rest of the coherent optical waves propagates unhindered. The optical waves propagating through the specimens are called object waves, sometimes also called object beams, and the unhindered optical waves are called reference waves, sometimes also called reference beams. The structure of the microscopic specimen introduces amplitude attenuations and phase delays to the object waves with respect to the reference waves. In other words, the structure of the microscopic specimen is encoded in the object waves.

[0007] The information encoded in the object waves can be recovered by interfering the object waves with the reference waves and post processing. The reference waves and the object waves are interfered, and the interfered optical waves are recorded using an imaging device. The recorded interference pattern, also called an interferogram, is subsequently processed to reconstruct the amplitude and phase structure of the microsopic specimen.

[0008] In DHM, the reference waves and the object waves are interefered using one of the two general techniques: off-axis interferometry and on-axis interferometry. Off-axis interferometry interferes waves propagating along two different axes and records the resulting interferogram using a single camera exposure. The use of a single camera exposure renders this technique especially suited to imaging dynamic processes, such as cell growths, cell membrane fluctuations, cell swelling, neuronal activity, and cytoskeletal dynamics. Unfortunately, off-axis interferometry requires a spatial filtering during numerical reconstruction that separates the desired positive-order diffracted waves, and the unwanted zero- and negative-order diffracted waves. This spatial filtering process limits the spatial resolution of the reconstructed image.

[0009] In on-axis interferometry, on the other hand, the reference waves and the object waves propagate along the same axis, which allows for restoring the specimen information without using a resolution-limited spatial filter. However, on-axis interferometry requires recording at least three phase-shifted interferograms. Since a relatively long time is required for applying the phase shifts and acquiring the interferograms, this method of phase-shifting is not suitable for recording dynamic processes. In addition, on-axis phase-shifting interferometry is also prone to phase-shift calibration errors, and system fluctuations that may occur while capturing multiple interferograms.

[0010] Some of these issues are partly addressed in Zhang et al, entitled "Reconstruction of inline digital holograms from two intensity measurements." Zhang shows an optical system that records two interferograms of an amplitude object (i.e., an object that attenuates only the amplitude of illuminated optical waves) and processes the two interferograms to recover an image of the amplitude object.

[0011] However, Zhang's optical system is tailored to reconstructing amplitude objects only and is incapable of reconstructing phase objects. Zhang et al. assume that the intensity of the object waves is significantly weaker than that of the reference waves. While this assumption might hold for objects with low transmission coefficients such as amplitude objects, this assumption does not hold for objects with high transmission coefficients such as phase objects. Therefore, Zhang's optical system is incapable of imaging object with both amplitude and phase structures.

[0012] FIG. 4 experimentally shows that Zhang's system fails to recover the phase structure of phase objects, and FIG. 6 experimentally shows that Zhang's system also does a poor job in recovering the amplitude structure of amplitude objects due to the impractical weak-object wave assumption. Therefore, Zhang's optical system cannot accurately recover either the amplitude structure or the phase structure of specimens. Thus, it is desirable to develop an in-line DHM technique that is capable of capturing amplitude and phase structures of microscopic objects while maintaining a short exposure time, a high spatial resolution, and a high contrast.

Summary

[0013] Certain embodiments disclose a digital holographic microscopy system that includes a light source configured to emit coherent optical waves, an object area configured to accommodate a specimen, a first optical Fourier element configured to Fourier transform the coherent optical waves from the object area that include directly transmitted waves and diffracted waves, a phase modulator configured to introduce a phase delay between the directly transmitted waves and the diffracted waves, a second optical Fourier element configured to receive the directly transmitted waves and the diffracted waves from the phase modulator and to inversely Fourier transform the directly transmitted waves and the diffracted waves, thereby providing interfered optical waves, and at least one imaging device configured to record the interfered optical waves at first and second recording planes to generate a first interferogram and a second interferogram.

Brief Description of Drawings

[0014] FIG. 1 illustrates in-line dual-plane digital holography microscopy (ID-DHM) in accordance with some embodiments of the present invention;

[0015] FIG. 2 shows an image of a binary phase grating reconstructed using an embodiment of ID-DHM shown in FIG. 1; [0016] FIG. 3 illustrates a binary phase grating reconstructed using an embodiment of ID- DHM shown in FTG. 1 ;

[0017] FIG. 4 illustrates a binary phase grating reconstructed using Zhang's optical system;

[0018] FIGs. 5A-5B show an image and a profile of a portion of the USAF resolution chart reconstructed using an embodiment of ID-DHM shown in FIG. 1;

[0019] FIGs. 6A-6B show an image and a profile of a portion of the USAF resolution chart reconstructed using Zhang's optical system;

[0020] FIG. 7 illustrates common-path in-line dual-plane digital holography microscopy (CID- DHM) in accordance with some embodiments of the present invention;

[0021] FIGs. 8A-8B illustrate two interferograms of polystyrene beads recorded using an embodiment of CID-DHM shown in FIG. 7;

[0022] FIG. 9 illustrates the phase information of polystyrene beads reconstructed using an embodiment of CID-DHM shown in FIG. 7;

[0023] FIGs. 10A-10B illustrate two interferograms of fibers recorded using an embodiment of CID-DHM shown in FIG. 7;

[0024] FIG. 11 illustrates the phase information of fibers reconstructed using an embodiment of CID-DHM shown in FIG. 7; and

[0025] FIG. 12 illustrates common-path in-line multi-modal digital holography microscopy (CIM-DHM) in accordance with some embodiments of the present invention.

Detailed Description

[0026] Embodiments of the present invention arc directed to systems and methods of an in-line digital holographic microscopy (DHM) that is configured to record a plurality of interferograms associated with microscopic specimens and to recover from the plurality of inteferograms the amplitude information and the phase information of the microscopic specimens. Because the plurality of interferograms can be recorded substantially simultaneously, embodiments of the present invention can record fast dynamic processes such as cell membrane fluctuations, cell swelling, neuronal activity, and cytoskeletal dynamics.

In-line Dual-plane DHM (ID-DHM)

[0027] Generally, in-line DHM uses a coherent light source to illuminate a specimen that is located in an optical path between the light source and an image plane. In-line DHM is configured to illuminate the specimen along the axis normal to the image plane; the optical waves passing through the specimen are called the object waves. In-line DHM is also configured to use the same coherent light source to generate optical waves that do not pass through the specimen. As discussed in the background section, these optical waves are called the reference waves.

[0028] The object waves are interfered with reference waves, and the resulting interference pattern is recorded at the image plane using an imaging device (i.e., optical detector array such as CCD or CMOS sensor array). The recorded intereference pattern is also called an interferogram. The interferogram includes three image components: (1) a reference image formed from the reference waves, also called a zero-order diffraction image, (2) a specimen image of the illuminated specimen formed from the object waves, and (3) a conjugate specimen image of the illuminated specimen formed from the complex conjugate of the object waves.

[0029] The goal of in-line DHM is to recover the specimen image from interferograms. To recover the specimen image of the illuminated specimen from the interferograms, in-line DHM needs to remove two redundant image components from the recorded interferograms: the zero-order diffraction image and the conjugate specimen image. As illustrated below, these redundant image components can be reliably removed by taking a plurality of interferograms at different positions.

[0030] FIG. 1 shows an in-line dual-plane DHM (ID-DHM) system in accordance with certain embodiments. The ID-DHM system 100 includes a coherent light source 102, a beam expander (BE) 104, two beam splitters (BSi and BS ₂ ) 106, 120, an aperture 108, two mirrors (M ₁ and M ₂ ) 110, 118, an object area (also called a sample area) 112, a microscope objective (MO) 114, a field lens (FL) 116, a first imaging device 122, a second imaging device 124, a computing device 126, and a display device 128.

[0031] A coherent light source 102 emits linearly polarized optical waves. Preferably, the emitted optical waves are collimated waves of monochromatic light. The coherent light source 102 can include a continuous-wave laser, in particular an Ar-Kr laser (λ = 488 ran), and a diode laser. The optical waves from the light source 102 are subsequently spatially filtered and collimated using a beam expander (BE) 104. The BE 104 spatially filters the coherent optical waves in order to provide a clean, expanded Gaussian profile and to remove random fluctuations in the intensity profile of the optical waves, thereby improving the resolution of the imaging system 100. In addition to the BE 104, a dedicated spatial filter can also be used. A dedicated spatial filter can include diffractive optical elements, beam shapers, and fiber illuminators. [0032] The collimated optical waves from the BE 104 are subsequently split into two sets of optical waves using a beam splitter (BSi) 106. The first set of waves, which is reflected by a first mirror (Ml) 118, serves as the reference waves. The second set of waves propagates through an aperture 108 and is reflected by a second mirror (M ₂ ) 110 to be directed to the object area 112. The object area 112 has thereon the specimen to be examined. The specimen can be an amplitude object, a phase object, or an object with both an amplitude structure and a phase structure.

[0033] The specimen can modify the light rays in the second set of waves based on its optical characteristics.

[0034] The second set of waves passing through the object area 112 is magnified by a microscope objective (MO) 114 and collimited by a field lens (FL) 116, thereby becoming the object waves. The object waves and the reference waves are subsequently combined and interfered using an optical element, which can be a second beam splitter (BS2) 120.

[0035] In a preferred embodiment, the interfered optical waves are recorded at two image planes using imaging devices 122, 124, one imaging device 122 located at the first recording plane and another imaging device 124 located at the second recording plane. The imaging devices 122, 124 can include an image sensor, such as a charge-coupled device (CCD) sensor and a

complementary metal-oxide-semiconductor (CMOS) sensor, and the recorded images are called an interference pattern, an interferogram, or a hologram. The first recording plane P 1 is located at a distance z from the image plane and the second recording plane P2 is located at z + Δζ from the image plane. The recorded interferogram at the first recording plane is denoted as Ii and the recorded interferogram at the second recording plane is denoted as I ₂ .

[0036] In another embodiment, the two interferograms are recorded sequentially using a single imaging device: (1) place the imaging device at a first recording plane, (2) record a first

interferogram at the first recording plane at a first time instance, (3) move the imaging device to a second recording plane, and (4) record a second interferogram at the second recording plane at a second time instance.

[0037] The recorded interferograms are processed to reconstruct specimen information using a computing device 126. The specimen information can include an amplitude structure of the specimen, a phase structure of the specimen, or a combination of both. The two recorded interfero rams, Ii and I ₂ , can be expressed as follows:

where the reference waves are assumed to be on-axis plane waves of unit amplitude without loss of generality, and and indicate the diffraction pattern of the specimen

object function ) at two image planes. The first two terms of Eq. (1) and Eq. (2), and , respectively, correspond to the zero-order diffraction

image of the respective interferogram; the third term of Eq. (1) and Eq. and

, respectively, correspond to the specimen image of the respective interferogram;

and the last term of Eq. (1) and Eq. (2), respectively,

correspond to the conjugate specimen image of the respective interferogram.

[0038] The goal of DHM is to recover from Ii and I2. The diffraction patterns can be expressed in terms of the specimen' s diffraction pattern using the Rayleigh-Sommerfeld diffraction formula as follows: where and the operator

{ } stands for a free space propagation operator indicating a propagation of optical waves in free space over a distance z. Therefore, to recover the specimen image of the illuminated specimen either should be recovered from the recorded

interferograms Ii and I ₂ .

[0039] The two interferograms, Ii and I ₂ , can be processed jointly to recover or

. As a first step, the zero-order diffraction image in each interferogram,

respectively, is removed. Apparently, the zero-order

diffraction image is constant across the image. Therefore, the zero-order diffraction image can be removed by subtracting the average intensity of the respective interferogram as illustrated in Eq. (4) and Eq. (5). An interferogram with a zero average intensity, called a zero-mean interferogram , is denoted as / .

where , Δχ and Ay are the pixel sizes of the imaging device,

and N and M are the number of pixels along x and r directions, respectively.

[0040] As a second step, the conjugate image of the first zero-mean interferogram

/, is removed using information from the second zero-mean interferogram l ₂ . The conjugate image of the first zero-mean interferogram l ₁ and the conjugate image of

the second zero-mean interferogram l ₂ are related through a free-space propagation operator:

Let be the difference between the first zero-mean interferogram l ₁ and the propagation- operated second zero-mean interferogram l ₂ . Then the following relationship holds:

Eq. (8) holds because of the linearity of the propagation operator, i.e.,

[0041] Given these relationships, the obj ect function can be extracted in the Fourier

domain:

where is the transfer function of free space propagation over a distance 2Δz ; and

is the Fourier transform of the diffraction pattern can be

represented as follows: where λ is the wavelength of the waves.

[0042] Eq. (9) shows that is related to and the transfer function

. The benefit of this relationship is that both and H can be

numerically constructed: can be computed directly from the recorded interferograms as shown in Eq. (8); can be computed using Eq. (10). Therefore, the diffraction pattern at the first image plane can be calculated as follows:

where stands for the inverse Fourier transform. The object function can be computed from the diffraction pattern at the first image plane by taking the inverse

Fresnel transformation over a distance of '- z' . The reconstructed object function can then be displayed on a display device 128, which includes a liquid crystal display (LCD), a cathod ray tube (CRT) display, and a light-emitting diode (LED) display. Therefore, the optical system of FIG. 1 can recover the objection function of the specimen from the two interferograms recorded at two image planes.

[0043] FIG. 2 shows an image of a binary phase grating (i.e., a phase object) reconstructed using the optical system 100 of FIG. 1. The image depicts the phase profile of the optical field transmitted through the grating where the two different regions correspond to phase shifts introduced by the binary phase grating. The bar on the right shows the phase value of the phase grating in radians. For this reconstruction, the interferograms are recorded by using an imaging device called a SPOT Insight™ 2 MP Firewire CCD with square pixels of size 7.4 μηι. The diffracted light from the phase grating is magnified by a 50 x MO 114 (Nikon™), and the two interferograms are recorded at distances z = 80 mm and z + Δζ = (80 + 0.1) mm from the image plane.

[0044] FIG. 3 shows the 3D perspective phase profile of the region indicated in FIG. 2. FIG. 3 clearly shows the peaks and valleys of the diffraction grating. The fluctuations in the phase values can be attributed to the spatial nonuniformities of the grating surface and impurities in the glass. FIGs. 2 and 3 demostrate that the disclosed embodiment of ID-DHM can reliably reconstruct phase information of specimens. [0045] As a comparison, FIG. 4 shows an image of the same binary phase grating reconstructed using the optical system of Zhang et al., entitled "Reconstruction of in-line digital holograms from two intensity measurements." The reconstruction in FIG. 4 shows that the phase of the diffraction grating varies only from -2.55 to -2.3 radians. In principle, the phase variation in a proper diffraction grating is always greater than the phase variations illustrated by the reconstruction.

Therefore, the phase image reconstructed using Zhang's optical system is inaccurate. The origin of such inaccuracy may step from (1) Zhang's assumption that the magnitude of object waves is significantly low compared to that of the reference waves and (2) the logarithmic operations performed on the recorded interferograms.

[0046] FIGs. 5A-5B show an image and a profile of a portion of the USAF resolution chart (i.e., an amplitude object) reconstructed using the optical system 100 of FIG. 1. The

interferograms are recorded using a 20x MO 114. The finest structure in the USAF resolution chart is the sixth element of Group 7. The width of the sixth element in Group 7 is 4.4 μm. The reconstructed image 140 shows that all the elements of Groups 6 and 7 are clearly resolved. The profile 142 in FIG. 5B shows the pixel intensity along the direction of the yellow arrow indicated on the reconstructed image 140. The profile 142 shows that the contrast of the reconstructed amplitude image is sufficiently high. The quality of the reconstructed image 140 is robust to the choice of distance z from the reference plane 126. It is possible to obtain qualitatively similar results even when interferograms are recorded at the reference plane, i.e., z = 0.

[0047] For comparison, FIGs. 6A-6B show an image and a profile of the same USAF resolution chart reconstructed using the optical system of Zhang et al., entitled "Reconstruction of in-line digital interferograms from two intensity measurements." Although Zhang's optical system is capable of reconstructing the USAF resolution chart, the contrast in the reconstructed image 150 is poor. The profile 152 in FIG. 6B shows the pixel intensity along the direction of the yellow arrow indicated on the reconstructed image 150. The profile 152 shows that the contrast of the reconstructed image 150 is quite low (varying between intensity of 4 and 6), rendering the result 150 not as useful as the image reconstructed using embodiments of ID-DHM.

Common-path In-line Dual-plane DHM (CID-DHM)

[0048] In certain embodiments, in-line dual-plane DHM can be incorporated in a common-path DHM system. Existing common-path DHM systems are intricate optical systems that are difficult to control and use because they require (1) taking at least four interferograms, (2) mechanically translating a grating at a resolution of about Ιμηι, and/or (3) precisely aligning the optical elements. These systems are also not suited to imaging dynamic processes because multiple interferograms must be captured sequentially with different grating settings. Common-path in-line dual-plane DHM (CID-DHM) addresses these issues. CID-DHM is capable of capturing interferograms at a single time instance without changing phase grating settings.

[0049] At a high level, CID-DHM uses a coherent light source to illuminate a specimen that is located in an optical path between the light source and an image plane. CID-DHM is configured to illuminate the specimen along the axis normal to the image plane. The optical waves passing through the specimen include two components: (1) directly transmitted waves and (2) diffracted waves. Some optical waves propagate through the specimen unscattered. These waves are called the directly transmitted waves. The directly transmitted waves are plane waves whose amplitude and phase do not vary across the plane. On the other hand, other optical waves do become affected by the phase structure of the specimen. These waves are called the diffracted waves. The diffracted waves form plane waves whose amplitude and phase do vary across the image plane.

[0050] In contrast to ID-DHM, which interferes the optical waves passing through the specimen with separate reference waves, CID-DHM does not use separate reference waves. Instead, CID- DHM interferes the directly transmitted waves and the diffracted waves to extract the specimen information. In other words, in CID-DHM, the directly transmitted waves perform the function of the reference waves and the diffracted waves perform the function of the object waves.

[0051] The interferograms of CID-DHM include three image components: (1) a reference image formed from the directly transmitted waves, also called a zero-order diffraction beam, (2) a specimen image of the illuminated specimen formed from the diffracted waves, and (3) a conjugate specimen image of the illuminated specimen formed from the complex conjugate of the diffracted waves. The goal of CID-DHM is to recover the specimen image from interferograms. To recover the specimen image of the illuminated specimen from the interferograms, in-line DHM needs to remove two redundant image components from the recorded interferograms: the zero-order diffraction image and the conjugate specimen image. As illustrated below, these redundant image components can be reliably removed by taking a plurality of interferograms at different positions. In order to record interferograms with a substantial contrast, CID-DHM may use a phase modulator to introduce a fixed phase delay between the directly transmitted waves and the diffracted waves. CID-DHM eliminates common phase noise substantially by simultaneously recording the two interferograms. Therefore, CID-DHM is capable of maintaining sub-nanometer level of optical path length stability.

[0052] FIG. 7 illustrates a CID-DHM optical system in accordance with certain embodiments. The CID-DHM system 160 includes a light source 102, a beam expander (BE) 104, an object area (also called a sample area) 112, a microscope objective (MO) 114, a field lens (FL) 116, lenses 162, 166, a phase modulator 164, a beam splitter (BS) 168, two imaging devices 170, 172, a computing device 126, and a display device 128.

[0053] A coherent light source 102 emits linearly polarized optical waves. Preferably, the emitted optical waves are collimated waves of monochromatic light. The coherent light source 102 can include a continuous- wave laser, in particular an Ar-Kr laser 102 (λ = 488 nm), and a diode laser. The optical waves from the light source 102 are subsequently spatially filtered and collimated using a beam expander (BE) 104. The BE 104 spatially filters the coherent optical waves in order to provide a clean, expanded Gaussian profile and to remove random fluctuations in the intensity profile of the optical waves, thereby improving the resolution of the imaging system 160. In addition to the BE 104, a dedicated spatial filter can also be used. A dedicated spatial filter can include diffractive optical elements, beam shapers, and fiber illuminators.

[0054] The collimated optical waves propagate through the object area 112, which has thereon the specimen to be analyzed. The specimen scatters the optical waves based on its optical characteristics and generates directly transmitted waves and diffracted waves, as discussed earlier. The directly transmitted waves and the diffracted waves are subsequently magnified by a microscope objective (MO) 114, and the magnified waves arc collimated using the field lens (FL) 116.

[0055] The collimated waves are then passed through the first lens Li 162. The first lens Li 162 is a Fourier lens: the directly transmitted waves converge on the optical axis of the first lens Li 162, generating the zero-order Fourier component of the specimen; the diffracted waves converges at different positions around the optical axis of the first lens Li 162, generating the higher-order Fourier components of the specimen. The plane at which the collimated waves converge is called the Fourier plane.

[0056] The convergent waves are phase modulated at the Fourier plane using a phase modulator 164. In particular, the phase modulator 164 introduces a predetermined amount of phase delay between the directly transmitted waves and the diffracted waves to record an interference pattern. In certain embodiments, the phase modulator 164 is constructed using a liquid crystal, and the liquid crystal phase modulator 164 is configured to introduce a phase delay substantially close to to the diffracted waves while not introducing any phase delay to the directly transmitted waves. In another embodiment, the liquid crystal phase modulator 164 is configured to introduce a phase

.

delay substantially close to to the directly transmitted waves while not introducing any phase

delay to the diffracted waves.

[0057] The optical waves through the phase modulator 164 propagates through a second lens L ₂ 166, which is placed at L ₂ 's focal distance from the Fourier plane. The second lens L ₂ 166 is configured to perform the inverse Fourier transform of the phase-modulated waves. The second lens L ₂ 166 planerizes the directly transmitted waves and diffracted waves and superposes them coherently. This way, the directly transmitted waves, i.e., the zero-order Fourier component of the specimen, act as reference waves that are interfered with the diffracted waves, i.e., the higher-order Fourier components of the specimen.

[0058] The interfered waves are recorded at two recording planes. In a preferred embodiment, the two interferograms are recorded simultaneously using a beam splitter (BS) 168 and two imaging devices 170, 172, one located at the first recording plane at a distance z from the image plane and another located at the second recording plane at a distance z + Az from the image plane. In another embodiment, the two interferograms are recorded sequentially: (1) record the first interferogram at the first recording plane at a first time instance, (2) move the CCD to the second recording plane, and (3) record the second interferogram at the second recording plane at a second time instance. The two interferograms arc processed using a computing device 126 to reconstruct the specimen information. The method of reconstructing the specimen information from the two interferograms is identical to that of ID-DHM.

[0059] FIGs. 8 and 9 illustrate an experimental validation of imaging a polystyrene bead using the embodiment of CID-DHM shown in FIG. 7. Two images 190, 192 in FIGs. 8A-8B are the interferograms recorded using the two imaging devices 170, 172, and the image 194 in FIG. 9 is the phase profile of the polystyrene bead reconstructed from the interferograms 190, 192. The vertical gray scale of FIG. 9 shows the phase values in radians. The illustrated phase profile 194 is phase- wrapped - one skilled in the art can use known phase unwrapping techniques to reconstruct the bead's shape and size information from the wrapped phase profile.

[0060] Similarly, FIGs. 10 and 11 illustrate an experimental validation of imaging fibers using the embodiment of CID-DHM shown in FIG. 7. Two images 200, 202 in FIGs. 10A-10B are the interferograms recorded using the two imaging devices 170, 172, and the image 204 in FIG. 11 is the phase profile of the fibers reconstructed from the interferograms 200, 202. The vertical gray scale of FIG. 11 shows the phase values in radians. In FIGs. 8 and 10, the two interferograms were recorded at planes that are 80 cms and (80+0.01) cms away from the image plane.

[0061] CID-DHM can be useful in many biological applications that require measurements of quantitative phase information of fast dynamic processes. Furthermore, CID can be useful in the area of investigating three-dimensional particle distribution and motions such as observing aerosol particles undergoing Brownian motion. Such processes demand both high spatial and temporal resolutions from the imaging system, which can be easily resolved with CID-DHM.

Common-path In-line Multi-modal DHM (C1M-DHM)

[0062] DHM can be combined with fluorescence microscopy to acquire specimen information in multiple modalities. Fluorescence microscopy is a well established and widely used technique within the field of cell biology and has permitted, in particular with the utilization of specific fluorescent cellular probes, the observation of dynamic processes in living cells ranging from vesicles fusion to the concentration changes of specific intracellular signaling molecules. While quantitative phase microscopy techniques primarily reveal morphological information, fluorescence microscopy can reveal functional information of live cells. Thus, comprehensive information about any biological specimens can be obtained by combining the optical imaging modalities of quantitative phase microscopy (based on digital holographic microscopy) and fluorescence microscopy. Fluorescence microscopy uses intrinsic or extrinsic chromophores to reveal specimen's hidden details that cannot otherwise be observed. In fluorescence microscopy, a specimen is illuminated with optical waves, which causes fluorescence in the specimen. The light emitted by fluorescence, which is at a different wavelength than the illumination, is then detected and analyzed.

[0063] Multimodal microscopy, such as multimodal DHM, combines phase microscopy and fluorescence microscopy to image both phase structure of the specimen as well as hidden details that cannot otherwise be observed. Existing multimodal DHM techniques capture an interferogram for phase information and fluorescence image for fluorescence information in a sequential manner. Therefore, the applications of existing multimodal DHM techniques have been limited to

observations of static or slowly varying phenomena.

[0064] These issues are addressed by common-path in-line multi-modal DHM (CIM-DHM). CIM-DHM can substantially simultaneously record one set of interferograms for phase information and a fluorescence image for fluorescence information, using a dichroic mirror and three imaging devices. FIG. 12 shows an optical setup of CIM-DHM in accordance with certain embodiments. The optical setup 220 is based on an embodiment of CID-DHM illustrated in FIG. 7, but the optical setup 220 further includes a dichroic mirror (DM) 222 and a third imaging device 224.

[0065] As in CID-DHM, the object area 112 is illuminated with coherent optical waves from the light source 102. The optical waves passing through the object area 112 include three components: (1) directly transmitted waves, (2) diffracted waves, and (3) fluorescence waves encoding the fluorescence information of the specimen. The directly transmitted waves and the diffracted waves have the same wavelength as that of the coherent optical waves from the light source 102, whereas the fluorescence waves have different wavelengths. These components are Fourier transformed using the first Fourier lens 162. Then a phase delay is introduced between the directly transmitted waves and the diffracted waves using a liquid crystal phase modulator 164. Subsequently, the directly transmitted waves, diffracted waves, and the fluorescence waves are inversely Fourier transformed using the second Fourier lens 166.

[0066] The dichroic mirror (DM) 222 is configured to (1) receive optical waves passing through the liquid crystal phase modulator 164, (2) reflect optical waves with the substantially identical wavelength as the coherent optical waves from the light source 102, and (3) transmit (or let through) other wavelengths with insubstantial attenuation (i.e., the transmission coefficient of the DM 222 for other wavelengths is high). In the embodiment illustrated in FIG. 12, the DM 222 (1) receives the directly transmitted waves, the diffracted waves, and the fluorescence waves, (2) reflects the directly transmitted waves and the diffracted waves, and (3) transmits the fluorescence waves. In certain embodiments, the transmission coefficient of the DM 222 for other wavelengths is greater than 0.9. In other embodiments, the transmission coefficient of the DM 222 for other wavelengths is greater than 0.95.

[0067] The reflected waves, i.e., the directly transmitted waves and the diffracted waves, are subsequently interfered and the interfered waves are split into two sets using a beam splitter (BS) 168. Then each set of interfered waves are recorded at the phase arm, as indicated in the FIG. 12, using one of the two imaging devices 170, 172, as in CTD-DHM. The recorded interferograms can be processed to reconstruct the phase information using techniques identical to CID-DHM. On the other hand, the transmitted waves, i.e., the fluorescence waves, are recorded at the

fluorescence arm, as indicated in the FIG. 12, using a third imaging device 224. Therefore, the optical setup 220 illustrated in FIG. 12 enables capturing both phase information and

fluorescence information at a single time instance, which is important for imaging dynamic processes.

Components of DHM

[0068] An imaging device used in illustrative embodiments can include a charge coupled device (CCD) sensor. The CCD sensor can be, for example, a two-dimensional array of detectors integrated into single, compact electronic chip. The CCD sensor converts photons to electrons using closely spaced metal-oxide-semiconductor (MOS) diodes and thereby generates a discrete electronic representation of a received optical image. A controller / processor reads the image representation from the CCD sensor pixel-by-pixel and organizes it into a digital array. The digital array can then be output to a memory or image store. The images can be displayed on an image display, such as a cathode ray tube or another type of electronic image display.

[0069] A phase modulator used in illustrative embodiments can include a liquid crystal phase modulator. Some of the greatest advantages of the liquid crystal phase modulator, in contrast to conventional phase modulators such as piezo-electric transducers (PZT), are a high light transparency and a high flexibility in forming electrodes of arbitrary shapes. These unique characteristics of the liquid crystal phase modulator can address many difficulties in the design of an interferometer. Furthermore, liquid-crystal devices can operate at a relatively low voltage (5-10 V) and do not exhibit hysteresis problem. These characteristics permit convenient and precise control of phase.

[0070] A liquid crystal phase modulator can be fabricated using a homogenous-type nematic liquid cell. Nematic liquid crystals (LC) include rodlike molecules which line up parallel to a preferred direction and hence are anisotropic. When a linearly polarized monochromatic light wave propagates through a homogeneously aligned LC cell , the anisotropy property of the liquid crystal adds a certain amount of phase to the transmitting beam. [0071] A homogenous-type nematic liquid cell can be configured to introduce an arbitrary amount of phase modulation between the directly transmitted waves and the diffracted waves. A homogenous-type nematic liquid cell has a glass plate and input/output transparent electrodes deposited on both sides. In a preferred embodiment, a phase modulator is configured to modulate only the diffracted waves. To make a phase modulator that modulates only the diffracted waves, one can remove a small circular area of the transparent electrodes at the center, as illustrated in FIG. 7 and FIG. 12. The resulting liquid crystal cell has transparent electrodes across the entire plane except for the circular area at the center. Therefore, the optical waves hitting the transparent electrodes, which are the higher-order Fourier component of the illuminated specimen, are phase modulated while the optical waves hitting the central area, which are the zero-order Fourier component of the illuminated specimen, are not phase modulated. This way, the liquid crystal cell can introduce an arbitrary amount of phase modulation between the directly transmitted waves and the diffracted waves. In another embodiment, a phase modulator is configured to modulate only the directly transmitted waves. To make a phase modulator that modulates only the directly transmitted waves, one can remove the transparent electrodes except for a small circular area of the center, which is the inverse of the liquid crystal illustrated in FIG. 7 and FIG. 12.

[0072] Illustrative embodiments use a computing device to reconstruct specimen information from interferograms. A computing device can include any platforms capable of computations. A computing device can include a processor and a memory. Non-limiting examples can include computers, servers, set-top boxes or set-top units, netbooks, laptops, smart phones, and any other audio/visual equipment with computation capabilities. The computing device can have a memory such as a computer readable medium, flash memory, a magnetic disk drive, an optical drive, a programmable read-only memory (PROM), and/or a read-only memory (ROM). The computing device can be configured with one or more processors that process instructions and run software that may be stored in memory. The processor can also communicate with the memory and interfaces to communicate with other devices. The processor can be any applicable processor such as a system- on-a-chip that combines a CPU, an application processor, and flash memory. The computing device can also provide a variety of user interfaces such as a keyboard, a touch screen, a trackball, a touch pad, and/or a mouse. The computing device may also include speakers and a display device in some embodiments. [0073] The method or process of reconstructing specimen information from interferograms can be implemented in software, which is stored in memory. Tn some embodiments, the software is implemented a high level procedural or an object-orientated language such as C, C++, C#, Java, or Perl. The software may also be implemented in assembly language if desired. The language can be a compiled or an interpreted language. In certain embodiments, the software is stored on a storage medium or device such as read-only memory (ROM), programmable-read-only memory (PROM), electrically erasable programmable-read-only memory (EEPROM), flash memory, or a magnetic disk that is readable by a general or special purpose-processing unit to perform the processes described in this document. The processors can include any microprocessor (single or multiple core), system on chip (SoC), microcontroller, digital signal processor (DSP), graphics processing unit (GPU), or any other integrated circuit capable of processing instructions such as an x86 microprocessor.

[0074] The method or process of reconstructing specimen information from interferograms can be implemented in hardware using an application specific integrated circuit (ASIC), programmable logic array (PLA), field programmable gate array (FPGA), or any other integrated circuit.

[0075] Although the present disclosure has been described and illustrated in the foregoing example embodiments, it is understood that the present disclosure has been made only by way of example, and that numerous changes in the details of implementation of the disclosure may be made without departing from the spirit and scope of the disclosure, which is limited only by the claims which follow.