Title:
TEMPLATE DNA-PRIMER RELATIONSHIP ANALYZER, TEMPLATE DNA-PRIMER RELATIONSHIP ANALYZING METHOD, TEMPLATE DNA-PRIMER RELATIONSHIP ANALYZING PROGRAM, TEMPLATE DNA-PRIMER RELATIONSHIP EVALUATION DEVICE, TEMPLATE DNA-PRIMER RELATIONSHIP EVALUATION METHOD, AND TEMPLATE DNA-PRIMER RELATIONSHIP EVALUATION PROGRAM
Document Type and Number:
WIPO Patent Application WO/2019/171601
Kind Code:
A1
Abstract:
In order to analyze amplifiability of a primer to a template DNA, provided is a template DNA-primer relationship analyzer, comprising: a template DNA-base sequence acquisition unit for acquiring base sequence information of a template DNA; a primer base sequence acquisition unit for acquiring base sequence information of two primers; a couplable position coding processing unit for collating the information about two single-stranded template DNAs obtained from the template DNA and the two primers (hereinafter each referred to as collation targets), wherein a collation unit including a prescribed number of bases, extracted by dividing the primers into pieces with the prescribed number of bases is collated at each position where the collation unit is shifted from a beginning base thereof in the couplable direction of the collation target sequentially one by one, and, when a coupling relationship is established at equal to or more than half of a prescribed number of the positions, a character string (hereinafter, referred to as a word) which represents a relationship of a prescribed number of bases facing at collation positions as a prescribed code; and a word classification processing unit for classifying all words generated in the couplable position coding processing unit into a plurality of topics using a topic model.
Inventors:
ENDOH DAIJI (JP)
Application Number:
PCT/JP2018/009343
Publication Date:
September 12, 2019
Filing Date:
March 09, 2018
Export Citation:
Assignee:
EDUCATIONAL CORP RAKUNO GAKUEN (JP)
LAGRANGE CO LTD (JP)
LAGRANGE CO LTD (JP)
International Classes:
C12M1/00
Domestic Patent References:
| WO2015183173A1 | 2015-12-03 |
Other References:
IWAYAMA, KOJI ET AL: "Topic model for analysis of gene expression data", IEICE TECHINICAL REPORT, vol. 116, no. 500, 27 February 2017 (2017-02-27), pages 77 - 82
Attorney, Agent or Firm:
KOHNO Makoto et al. (JP)
Download PDF: