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Title:
TRIPHOSPHATE-CONTAINING DOUBLE-STRANDED RNA FOR IMMUNOSTIMULATION
Document Type and Number:
WIPO Patent Application WO/2013/097965
Kind Code:
A1
Abstract:
The present invention relates to immunostimulative double-stranded RNA of at least 45 base pairs or RNA having at least a double-stranded segment of at least 45 base pairs, respectively, wherein the RNA contains a free triphosphate group at the 5'-end of at least one strand.

Inventors:
ROHAYEM JACQUES (DE)
Application Number:
PCT/EP2012/071641
Publication Date:
July 04, 2013
Filing Date:
October 31, 2012
Export Citation:
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Assignee:
RIBOXX GMBH (DE)
ROHAYEM JACQUES (DE)
International Classes:
A61K31/713; C12N15/117
Domestic Patent References:
WO2010097414A12010-09-02
WO2008014979A22008-02-07
WO2008017473A22008-02-14
WO2007012329A22007-02-01
WO2009150156A12009-12-17
Foreign References:
EP2123757A12009-11-25
Other References:
FLORIAN EBERLE: "Activation of Innate Immunity by Ribonucleic Acids", HEIDELBERG, 7 April 2009 (2009-04-07), Heidelberg, pages 1 - 111, XP055053489, Retrieved from the Internet [retrieved on 20130214]
KUCNICK ET AL., CURRENT MEDICAL CHEMISTRY, 2010
COFFMANN ET AL., IMMUNITY, 2010
"Remington's Pharmaceutical Sciences", MACK PUBLISHING CO.
SCHAEKEL, K. ET AL., EUR. J. IMMUNOL., vol. 28, 1998, pages 4084 - 4093
Attorney, Agent or Firm:
HABERMANN, HRUSCHKA & SCHNABEL (München, DE)
Download PDF:
Claims:
Claims

1. A ribonucleic acid comprising at least one segment of double-stranded structure of at least 45 bp, preferably of at least 48 bp, more preferably of at least 70 bp, particularly preferred of from 45, 46, 47 or 48 to 200 bp, wherein said at least one segment of double-stranded structure has a first and a second end each having at least 2 to 10 G/C bp within the last 6 to 20, respectively, bp calculated from the last bp of the respective end of the double-stranded structure, and wherein the ribonucleic acid comprises a free triphosphate group at the 5'-end of at least one strand of the ribonucleic acid.

2. Ribonucleic acid of claim 1 wherein the at least 3 to 10 terminal bp of each end of said double-stranded structure are G/C bp.

3. Ribonucleic acid of claim 1 or 2 being essentially double-stranded.

4. Ribonucleic acid according to any one of the preceding claims comprising two

polyribonucleotide strands.

5. Ribonucleic acid according to any one of the preceding claims wherein the ribonucleic acid is blunt ended on both sides.

6. Ribonucleic acid according to any one of the preceding claims wherein the strands of the at least one segment of double-stranded structure are selected from the following sequence pairs: ppp-5'- (G/C)x(N)y(G/C)z-3'

3'- (G/C)x(N)y(G/C)z-5'

5'- (G/C)x(N)y(G/C)z-3'

3'- (G/C)x(N)y(G/C)z-5'-ppp ppp-5' - (G/C) x(N)y (G/C) z-3'

3'- (G/C)x(N)y(G/C)z-5'-ppp wherein ppp denotes a free triphosphate group and G/C is a G or C ribonucleotide with the proviso that when a G ribonucleotide is in a position in one strand the other strand has a C ribonucleotide in the opposite position and vice versa; N is any ribonucleotide with the proviso that the sequences of both strands are essentially complementary; each x is an integer of from 3 to 10, each y is an integer of 30 to 200, preferably 30 to 150, more preferably 30 to 100, even more preferred 30 to 50, and each z is an integer of from 3 to 10, with the proviso that x in one strand is equal to the x in the other strand, y in one strand is equal to the y in the other strand, and z in one strand is equal to the z in the other strand; and with the further proviso that the length of said double-stranded structure is from 45 to 220 bp, more preferably 45 to 150 bp, particularly preferred 45 to 90 bp, even more preferred 45 to 70 bp.

7. Ribonucleic acid of claim 6 wherein the strands of the at least one segment of double- stranded structure are one of the following sequence pairs:

ppp-5 ' (G)5 (N)y(G)5 3'

3' (C)5 (N)y(C)5 5' or ppp-5 ' (C)5 (N)y(C)5 3'

3' (G)5 (N)y(G)5 5' or ppp-5 ' (G)5 (N)y(C)5 3'

3' (C)5 (N)y(G)5 5' or ppp-5 ' (C)5 (N)y(G)5 3'

3' (G)5 (N)y(C)5 5' or

5'- (G)5(N)y(G)5-3'

3'- (C)5(N)y(C)5-5'-ppp or 5'- (C)5(N)y(C)5-3'

3'- (G)5(N)y(G)5-5'-ppp or

5'- (G)5(N)y(C)5-3'

3'- (C)5(N)y(G)5-5'-ppp or

5'- (C)5(N)y(G)5-3'

3'- (G)5(N)y(C)5-5'-ppp or ppp-5'- (G)5(N)y(G)5-3'

3'- (C)5(N)y(C)5-5'-ppp or ppp-5'- (C)5(N)y(C)5-3'

3'- (G)5(N)y(G)5-5'-ppp or ppp-5'- (G)5(N)y(C)5-3'

3'- (C)5(N)y(G)5-5'-ppp or ppp-5'- (C)5(N)y(G)5-3'

3'- (G)5(N)y(C)5-5'-ppp wherein y is an integer of from 35 to 200, preferably from 35 to 150, more preferably from 35 to 100, particularly preferred from 35 to 80, even more preferred from 35 to 40, and ppp denotes a free triphsphate group. 8. Ribonucleic acid according to any one of the preceding claims wherein the G/C content of said double-stranded structure is at least 45 %. 9. Ribonucleic acid of claim 8 wherein the G/C content is from 45 to 70%.

10. Ribonucleic acid of claim 9 wherein the C/C content is from 48 to 60 %.

11. Ribonucleic acid according to any one of claims 8 to 10 wherein the Tm of said

double-stranded structure is from 68 to 80 °C.

12. Ribonucleic acid of claim 7 wherein the strands of the at least one segment of double- stranded structure are one of the following sequence pairs: 5 ' -CCCCCUAAGCACGAAGCUCAGAGUUAAGCACGAAGCUCAGAGUCCCCC-3 '

(SEQ ID NO: 1)

ppp-5 ' -GGGGGACUCUGAGCUUCGUGCUUAACUCUGAGCUUCGUGCUUAGGGGG- 3' (SEQ ID NO: 2) 5 ' -CCCCCGAACGAAUUUAUAAGUGGGAACGAAUUUAUAAGUGGCCCCC-3 ' (SEQ

ID NO: 3)

ppp-5 ' -GGGGGCCACUUAUAAAUUCGUUCCCACUUAUAAAUUCGUUCGGGGG-3 ' (SEQ ID NO: 4) 5 ' -CCCCCACAACAUUCAUAUAGCUGACAACAUUCAUAUAGCUGCCCCC-3 ' (SEQ

ID NO: 5)

ppp-5 ' -GGGGGCAGCUAUAUGAAUGUUGUCAGCUAUAUGAAUGUUGUGGGGG-3 ' (SEQ ID NO: 6) 5 ' -CCCCCUAAGCAGCAAGCCUCAGCAGCUAAGCCAGCAGCCUCAGCAGCUAGCAGC

AAGCUCAGCAGCUAAGCCACGAGCUCAUGCGCCCCC-3 ' (SEQ ID NO: 7) ppp-5' -GGGGGCGCAUGAGCUCGUGGCUUAGCUGCUGAGCUUGCUGCUAGCUGCUG AGGCUGCUGGCUUAGCUGCUGAGGCUUGCUGCUUAGGGGG-3 ' (SEQ ID NO: 8) wherein ppp denotes a free triphosphate group.

13. A pharmaceutical composition comprising at least one ribonucleic acid according to any one of the preceding claims in combination with at least one pharmaceutically acceptable carrier.

14. Pharmaceutical composition of claim 13 comprising a vaccine.

15. The ribonucleic acid according to any one of claims 1 to 12 for use as a medicament.

16. The ribonucleic acid according to any one of claims 1 to 12 for immunostimulation.

17. Use of the ribonucleic acid according to any one of claims 1 to 12 as an agonist of Toll-like receptor 3 (TLR-3) and/or as an agonist of RIG-I.

18. A method of producing the ribonucleic acid according to any one of claims 1 to 12 comprising the steps of:

(i) synthesizing a ribonucleic acid having a sequence that folds into a form such that it adopts the double-stranded structure as defined in any of claims 1 to 12 wherein the ribonucleic acid contains a free triphosphate group at the 5'-end; or

(ii) synthesizing a first ribonucleic acid strand and a second ribonucleic acid

strand and annealing the two strands wherein the strands have the appropriate sequences so as to form the double-stranded structure as defined in any one of claims 1 to 12 wherein a free triphosphate is introduced at the 5'-end of one or both of the first and second strand of said ribonucleic acid.

Description:
Triphosphate-containing double-stranded RNA for

immunostimulation

The present invention relates to immunostimulative double-stranded RNA of at least 45 base pairs or RNA having at least a double-stranded segment of at least 45 base pairs, respectively, wherein the RNA contains a free triphosphate group at the 5'-end of at least one strand.

It is known that double-stranded RNA causes immunostimulation through the TLR-3 located in endosomes of dendritic and epithelial cells (see Kucnick et al. (2010) Current Medical Chemistry; Coffmann et al. (2010) Immunity). WO 2008/017473 A2 teaches that single-stranded oligonucleotides bearing free uncapped 5' phosphate groups are recognised by RIG-I leading to induction of type I IFN, IL-18 and I L-1 β.

The technical problem underlying the present invention is to provide an improved system for immunostimulation using RNA molecules.

The solution to the above technical problem is provided by the embodiments described herein and in the claims.

In particular, the present invention provides a ribonucleic acid comprising at least one segment of double-stranded structure of at least 45 bp, preferably of at least 48 bp, more preferably of at least 70 bp, particularly preferred of from 45, 46, 47 or 48 to 200 bp, wherein said at least one segment of double-stranded structure has a first and a second end each having at least 2 to 10 G/C bp within the last 4 to 20, respectively, bp calculated from the last bp of the respective end of the double-stranded structure, and wherein the ribonucleic acid comprises a free triphosphate group at the 5'-end of at least one strand of the ribonucleic acid. A "free triphosphate group" in context of the present invention means that this triphosphate group is not modified and specifically does not contain or is not part of, respectively, a cap structure. The free triphosphate-containing double-stranded ribonucleic acids of the present invention trigger both RIG-I (see. e.g. WO 2008/017473 A2) and TLR-3 pathways and exert a dose- dependent innate immune response as demonstrated herein. In particular, triphosphate- containing dsRNAs according to the invention exert a substantially stronger

immunostimulatory effect (as evidenced by a strong secretion of cytokines by dendritic cells and monocytes) in comparison to comparable dsRNA lacking a triphosphate group.

The triphosphate-containing ribonucleic acid of the present invention preferably has at least a segment of double-strand structure of a minimum of 45 bp wherein said double-stranded segment has increased thermodynamic stability on both ends (or end regions) of the dsRNA or dsRNA segment, respectively.

More particularly, it is provided a ribonucleic acid comprising at least one segment of double- stranded structure of at least 45 bp, preferably of at least 48 bp, more preferably of at least 70 bp, particularly preferred of from 45, 46, 47 or 48 to 200 bp or even more bp, wherein said at least one segment of double-stranded structure has a first and a second end each having at least 2 to 10 (preferably consecutive) G/C bp within the last 4 to 20, respectively, bp calculated from the last bp of the respective end of the double-stranded structure. Due to the increased presence of G/C base pairing at both ends or in both end regions of the double- stranded structure it results a thermodynamic "clamp" providing the RNA of the invention with a surprisingly high serum-stability and stability against cellular RNA degrading enzymes such as DICER. Accordingly, the inventive RNAs cannot be processed by cellular RNAses like the DICER complex. Therefore, the ribonucleic acid of the present invention displays a triggering of the TLR-3 pathway in combination with RIG-I stimulation leading to a sustained and powerful immunostimulation (innate immune response).

According to the present invention "2 to 10 G/C bp within the last 6 to 20 bp" at each end of the double-stranded ribonucleic acid or of the double-stranded segment of the ribonucleic acid, respectively, typically means that at least 50 % of the last 4 to 20 bp at each end of the double-stranded structure are G/C base pairs, preferably the G/C base pairs are

consecutive. Accordingly, at least 2 G/C base pairs are present within the last 4 bp, at least 3 G/C base pairs are present within the last 6 bp, at least 4 G/C base pairs are present within the last 8 bp, or at least 5 G/C base pairs are present within the last 10 bp, and so on, at both ends of the double-stranded structure.

The nucleotide sequence of the ribonucleic acid according to the invention between the G/C rich end regions as outlined above is in general not critical. However, it is preferred that the nucleotide sequence between the last 6 to 20 bp at each end is heteropolymeric.

Preferably, the at least 3 to 10 terminal bp of each end of the double-stranded structure in the ribonucleic acid of the invention are G/C bp.

Thus, in other words, the ribonucleic acid or double-stranded segment of the nucleic acid of the present invention has a nucleotide sequence that can be represented by the following general formula (1 ): wherein X is any nucleotide with the proviso that at least 2 to 10 nucleotides are G and/or C nucleotides and the G/C content is at least 50 %, N is any nucleotide and a is selected such that the ribonucleic acid (or double-stranded segment thereof) has a length of at least 45 bp wherein the sequence of N is preferably heteropolymeric, and wherein the other strand of the ribonucleic acid or the double-stranded segment of the ribonucleic acid has a complementary sequence to the above defined sequence.

It is not necessary that the ribonucleic acid of the present invention is completely double- stranded. However, typically it is essentially double-stranded, i.e. there is regular hydrogen bonding between the opposite bases of the strands forming the double-stranded structure, but there may be one or several mismatches through non-complementary bases or through chemical modifications. Usually, such mismatches do not exceed 10%, more preferably 5 %, particularly preferred 2% or even 1 % of the double-stranded molecule (or double-stranded segment of the inventive RNA, respectively).

According to preferred embodiments, the ribonucleic acid of the invention containing the double-stranded structure may also have overhangs at one or both ends of the double- stranded structure which can be of various length but typically do not exceed ten single- stranded residues, more preferably such overhangs comprise one, two or three residues. These overhangs may also comprise deoxyribonucleotides instead of ribonucleotides, if the overhang does not represent the 5' end containing the free triphosphate group. The ribonucleic acid of the present invention containing a double-stranded structure may be composed of one polyribonucleic strand that has a sequence allowing the formation of a hairpin structure such that the double-stranded structure as defined before builds up under appropriate conditions. However, in other preferred embodiments the ribonucleic acid according to the present invention comprises two separate polyribonucleotide strands.

According to preferred embodiments of the ribonucleic acid of the invention the strands of the at least one segment of double-stranded structure are selected from the following sequence pairs: ppp-5'- (G/C) x (N) y (G/C) z -3'

3'- (G/C) x (N) y (G/C) z -5' 5'- (G/C) x (N) y (G/C) z -3'

3'- (G/C) x (N) y (G/C) z -5'-ppp ppp-5' - (G/C) x (N) y (G/C) z -3'

3'- (G/C) x (N) y (G/C) z -5'-ppp wherein ppp denotes a free triphosphate group.

In the above structure G/C is a G or C ribonucleotide with the proviso that when a G ribonucleotide is in a position in one strand the other strand has a C ribonucleotide in the opposite position and vice versa; N is any ribonucleotide with the proviso that the sequences of both strands are essentially complementary; each x is an integer of from 2 to 10, in particular 2, 3, 4, 5, 6, 7, 8, 9, or 10, each y is typically an integer of 30 to 200 or more such as 500 or 600, preferably, 30 to 150, more preferably 30 to 100, even more preferred 30 to 50, and each z is an integer of from 2 to 10, in particular 2, 3, 4, 5, 6, 7, 8, 9, or 10, with the proviso that x in one strand is equal to the x in the other strand, y in one strand is equal to the y in the other strand, and z in one strand is equal to the z in the other strand; and with the further proviso that the length of said double-stranded structure is at least 45 bp, typically 45 to 520 bp or more such as 620 bp, preferably 45 to 220 bp, more preferably 45 to 150 bp, particularly preferred 45 to 90 bp, even more preferred 45 to 70 bp.

More preferably, the strands of the at least one segment of double-stranded structure are one of the following sequence pairs: ppp-5'- (G) 5 (N) y (G) 5 -3' 3'- (C) 5 (N) y (C) 5 -5' or ppp-5'- (C) 5 (N) y (C) 5 -3'

3' - (G) 5 (N)y (G) 5 -5' or ppp-5'- (G) 5 (N) y (C) 5 -3'

3'- (C) 5 (N) y (G) 5 -5' or ppp-5'- (C) 5 (N) y (G) 5 -3'

3'- (G) 5 (N) y (C) 5 -5' or

5'- (G) 5 (N) y (G) 5 -3'

3'- (C) 5 (N) y (C) 5 -5'-ppp or

5'- (C) 5 (N) y (C) 5 -3'

3' - (G) 5 (N)y (G) 5 -5' -ppp or

5'- (G) 5 (N) y (C) 5 -3'

3'- (C) 5 (N) y (G) 5 -5'-ppp or

5'-(C) 5 (N) y (G) 5 -3'

3'- (G) 5 (N) y (C) 5 -5'-ppp or ppp-5'- (G) 5 (N) y (G) 5 -3'

3'- (C) 5 (N) y (C) 5 -5'-ppp or

ΡΡΡ -5' (C) 5 (N) (C) -3'

3' (G) 5 (N) (G) -5' -ppp or

PPP -5 ' - (G) 5 (N) y (C) 5 -3'

3'- (C) 5 (N) y (G) 5 -5'-ppp or ppp-5'- (C) 5 (N) y (G) 5 -3'

3'- (G) 5 (N) y (C) 5 -5'-ppp wherein y is typically an integer of from 35 to 200 or more such as 500 or 600, preferably 35 to 150, more preferably 35 to 100, particularly preferred 35 to 80, even more preferred 35 to 40, and ppp denotes a free triphosphate group. As mentioned before, the sequence of the double-stranded region between the G/C "clamps" of the ribonucleic acid of the invention is in principle not critical, however, homopolymers of any of the ribonucleobases A, U, G, or C, in particular G or C, are not well accepted due to their potential toxicity. Normally, the sequence is chosen such that the overall sequence shows no evident complementarities to other existing RNA or DNA species in a cell or organism, particularly in order to avoid potential side effects from posttranscriptional gene silencing mechanisms. However, it may be appropriate that the sequence between the C/C base pairs at both ends, or generally speaking, between the G/C clamps as defined above, may be assembled from naturally occurring (partial) sequences that may be repeated. An example is a certain (partial) sequence of, e.g.20 to 90 nucleotides, of a naturally occurring sequence, e.g. of a virus, microorganism or other organism, that is repeated once or several times such as two, three, four or five or even more times, in order to provide a molecule of the present invention having the appropriate or desired, respectively, length.

In contrast thereto, with regard to an easier and less expensive production and also in order to avoid highly artificial and potentially toxic sequences, it is preferred that the double- stranded region between the G/C clamps is free of homopolymeric stretches of more than 5 contiguous identical nucleotides, and is free of short repeated sequence motifs of 3 to 10 nucleotides per motif. Furthermore, in order to further increase the stability of the RNA of the invention the G/C content of the double-stranded structure (comprising the G/C clamps) is at least 45%, more preferably 45 to 70%, particularly preferred 48 to 60%. It is also contemplated that the sequence between the "clamps" contains further (short) stretches of G/C base pairs, e.g.3, 4 or 5 G/C base pairs.

Such embodiments of the invention usually have a Tm of the double-stranded structure of from 68 to 80 C. In consideration of production costs to effective triggering of TLR-3 (dimerization), preferred lengths of the dsRNA structure, more preferably of the complete RNA, range from 45 to 150 bp, particularly preferred from 45 to 100 bp, even more preferred from 45 to 50 bp, i.e.45, 46, 47, 48, 49, or 50 bp. Specific preferred examples of the double-stranded RNA according to the invention are composed of the following (complementary) sequence pairs (both strands are given in 5' to 3' direction from left to right; ppp denotes a free triphosphate group):

Riboxxim®-48:

5 ' -CCCCCUAAGCACGAAGCUCAGAGUUAAGCACGAAGCUCAGAGUCCCCC-3 ' (SEQ ID NO: 1)

ppp- 5 ' -GGGGGACUCUGAGCUUCGUGCUUAACUCUGAGCUUCGUGCUUAGGGGG-3 ' (SEQ ID NO: 2) Riboxxim®-46:

5 ' -CCCCCGAACGAAUUUAUAAGUGGGAACGAAUUUAUAAGUGGCCCCC-3 ' (SEQ ID NO: 3)

ppp- 5 ' -GGGGGCCACUUAUAAAUUCGUUCCCACUUAUAAAUUCGUUCGGGGG-3 ' (SEQ ID NO: 4)

Riboxxim®-45:

5 ' -CCCCCACAACAUUCAUAUAGCUGACAACAUUCAUAUAGCUGCCCCC-3 ' (SEQ ID NO: 5)

ppp- 5 ' -GGGGGCAGCUAUAUGAAUGUUGUCAGCUAUAUGAAUGUUGUGGGGG-3 ' (SEQ ID NO: 6)

Riboxxim®-90:

5 ' -CCCCCUAAGCAGCAAGCCUCAGCAGCUAAGCCAGCAGCCUCAGCAGCUAGCAGC

AAGCUCAGCAGCUAAGCCACGAGCUCAUGCGCCCCC-3 ' (SEQ ID NO: 7)

ppp- 5' -GGGGGCGCAUGAGCUCGUGGCUUAGCUGCUGAGCUUGCUGCUAGCUGCUGA

GGCUGCUGGCUUAGCUGCUGAGGCUUGCUGCUUAGGGGG-3 ' (SEQ ID NO: 8) As mentioned before, the RNA of the present invention may have overhangs on one or both sides, but it is typically blunt-ended on both sides of the double-stranded structure. It is contemplated that the RNA of the present invention is equipped with further entities to improve the immunostimulative properties. For example, it would be possible to include CpG deoxyribonucleotide motifs into the ribonucleic acid of the invention (one or more of them) in order to trigger the Toll-like receptor 9 (TRL-9), at least partially. The RNA of the present invention may also contain one or more modified nucleotide analogues, in particular under stability considerations.

The chemical modification of the nucleotide analogue in comparison to the natural occurring nucleotide may be at the ribose, phosphate, and/or base moiety. With respect to molecules having an increased stability, especially with respect to RNA degrading enzymes, modifications at the backbone, i. e. the ribose and/or phosphate moieties, are especially preferred.

Preferred examples of ribose-modified ribonucleotides are analogues wherein the 2'-OH group is replaced by a group selected from H, OR, R, halo, SH, SR, NH 2 , NHR, NR 2 , or CN with R being C 1 -C 6 alkyl, alkenyl or alkynyl and halo being F, CI, Br or I. It is clear for the person skilled in the art that the term "modified ribonucleotide" also includes 2'- deoxyderivatives, such as 2'-0-methyl derivatives, which may at several instances also be termed "deoxynucleotides".

As mentioned before, the at least one modified ribonucleotide may be selected from analogues having a chemical modification at the base moiety. Examples of such analogues include, but are not limited to, 5-aminoallyl-uridine, 6-aza-uridine, 8-aza-adenosine, 5-bromo- uridine, 7-deaza-adenine, 7-deaza-guanine, N 6 -methyl-adenine, 5-methyl-cytidine, pseudo- uridine, and 4-thio-uridine.

Examples of backbone-modified ribonucleotides wherein the phosphoester group between adjacent ribonucleotides is modified are phosphothioate groups.

The present invention also provides a method of producing the RNA as defined herein comprising the steps of: (i) synthesizing a ribonucleic acid having a sequence that folds into a form such that it adopts the double-stranded structure as defined above wherein a free triphosphate group is introduced at the 5'-end of the ribonucleic acid; or

(ii) synthesizing a first ribonucleic acid strand and a second ribonucleic acid strand, and annealing the two strands under hybridization conditions wherein the strands have the appropriate sequences so as to form the double-stranded structure as defined herein wherein a free triphosphate is introduced at the 5'-end of one or both of the first and second strand of said ribonucleic acid. The polynucleotide molecules for providing the double-stranded RNA of the present invention may be prepared by chemical synthesis methods or enzymatically, or by a combination of chemical and enzymatic steps. Methods for the enzymatic preparation of the double- stranded RNA molecules of the present invention are preferably those that use RNA- dependent RNA polymerases of caliciviruses as disclosed in WO-A-2007/012329. With respect to enzymatic synthesis of chemically modified dsRNAs using RNA-dependent RNA polymerases the methods referred to in WO 2009/150156 are preferred. Chemical synthesis methods for preparing RNA strands are also well-known in the art.

The present invention also contemplates a vector encoding RNA species as defined herein. For example, a single-stranded dsRNA-containing entity as disclosed herein may be expressed in the form of a shRNA derivative.

Appropriately, double-stranded RNAs of the invention can also be labelled (for example, if there is an overhang on one side of the double-strand structure) for detection in research or diagnostic applications. The "label" can be any chemical entity which enables the detection of the RNA in question via physical, chemical, and all biological means. Examples of typical labels linked to or integrated into one or more of the nucleotides or added to one end of the molecules as disclosed herein are radioactive labels, chromophores, and fluorophores (e. g. fluorescein, TAM etc.).

The ribonucleic acids of the present invention are particularly for use as agonists of TLR-3 and/or RIG-I. In that function, the RNA molecules of the present invention exert an immunostimulatory effect in cells or organisms. Ribonucleic acids of the present invention are therefore useful as medicaments, in particular immunostimulatory preparations.

Ribonucleic acids of the present invention are also contemplated for the manufacture of a medicament for immunostimulation. The present invention is therefore also directed to a pharmaceutical composition comprising at least one ribonucleic acid as defined herein in combination with at least one pharmaceutically acceptable carrier, excipient, and/or diluent. The preparation of pharmaceutical compositions in the context of the present invention, their dosages and their routes of administration are known to the skilled person, and guidance can be found in the latest edition of Remington's Pharmaceutical Sciences (Mack publishing Co., Eastern, PA, USA). It is also contemplated that the pharmaceutical compositions of the invention contain two or more different RNAs as defined herein.

In cases where the RNA of the invention is used as an immunostimulatory drug alone, a topical administration of the appropriate preparation (e.g. a spray) to skin and/or mucosa is preferred. As an "RNA drug" the RNA of the present invention leads to stimulation of dendritic cells and generation of a CD8+ T cell response. Such application of the inventive dsRNA is especially useful in the treatment of infectious diseases, e.g. by viruses (such as Herpesvirus, Papillomavirus) or in the treatment of cancer. The improved immunostimulatory effects the ribonucleic acids of the present invention are also useful in combination with a vaccine directed to a certain disease. Thus, the RNA of the invention may also be used as an "RNA adjuvant" in vaccine preparations (or administered in a distinct preparation together with the vaccine, or sequentially). Simultaneous or sequential administration of the vaccine and the immunostimulatory RNA of the present invention should improve the immune response against the antigen of the vaccine by generating a protective CD8+ T cell response to soluble proteins (antigens), triggering DC activation and induction of type I IFN production.

The ribonucleic acids or pharmaceutical compositions as disclosed herein can also be combined with further immunostimulatory drugs known in the art.

The ribonucleic acids of the present invention are particularly useful in the treatment of diseases, including infectious diseases caused by infectious agents such as a bacterium, virus, and fungus, and tumours.

The present invention also provides a method for the treatment of a disease as mentioned above, preferably a viral infection or a tumour disease, comprising administering an effective amount of the pharmaceutical composition of the invention to a preferably mammalian, particularly human, patient in need of such treatment. The present invention also relates to a cell or non-human organism being transfected or transformed with the double-stranded RNA molecule as defined herein or with a vector coding therefor. The figures show:

Fig. 1 shows the sequences of the strands of double-stranded RNA molecules with a triphosphate moiety at one 5' end according to the invention called Riboxxim®-48 and Riboxxim®-90; length (in base pairs), Tm, G/C content and the presence of the triphosphate moiety are indicated.

Fig. 2 shows a photograph of an ethidium bromide-stained 10% polyacrylamide gel after electrophoretic separation of the indicated nucleic acids demonstrating their length. An RNA marker corresponding to dsRNA of 100 bp is shown in the first lane from the left, and an RNA marker corresponding to dsRNA of 25 bp, 21 bp and 17 bp is shown in the fourth lane from the left. RNAs according to the invention Riboxxim®-90 and Riboxxim® 48 are shown in the second and third lane, respectively, from the left.

Fig. 3 shows two diagrams indicating the concentration of the cytokine IL-6 in the cell culture supernatant of dendritic cells (slanDC, CD1 c+) and monocytes due to secretion of the cytokine by the indicated cells after stimulation with double-stranded RNA according to the invention bearing a triphosphate moiety, Riboxxim®-48 (Fig. 3A) or Riboxxim®-90 (Fig. 3B).

Fig. 4 shows diagrams of the concentration of IL-1 β in the cell culture supernatant of slan dendritic cells (Fig. 4A), myeloid dendritic cells (CD1 c+, Fig. 4B) and monocytes (Fig. 4C) indicating a dose-dependent secretion of I L-1 β after stimulation with Riboxxim®-90 in contrast to a dose-independent, generally high secretion of I L-1 β after stimulation with poly(l:C). The cells were stimulated with 6.25 μg ml, 12.5 μg ml, 25 μg ml, and 50 μg ml of the respective nucleic acid.

Fig. 5 shows diagrams of the concentration of IL-6 in the cell culture supernatant of slan dendritic cells (Fig. 5A), myeloid dendritic cells (CD1 c+, Fig. 5B) and monocytes (Fig. 5C) indicating a dose-dependent secretion of IL-6 after stimulation with Riboxxim®-90 in comparison to the secretion of IL-6 after stimulation with poly(l:C). The cells were stimulated with 6.25 μg ml, 12.5 μg ml, 25 μg ml, and 50 μg ml of the respective nucleic acid. Fig. 6 shows diagrams of the concentration of I L 1 β (Fig. 6A) and IL-6 (Fig. 6B), respectively, in the cell culture supernatant of monocytes isolated from two different donors indicating a dose-dependent secretion of the respective interleukin after stimulation with triphosphated Riboxxim®-90 in comparison to the stimulation by not triphosphated dsRNA90 and by poly(l:C). The mean values +/- SEM of at least three independent measurements per blood donor are shown.

Fig. 7 shows the results of an electrospray ionization mass spectrometry of a double- stranded RNA-molecule bearing a triphosphate moiety at one 5' end, Riboxxim®-48; The MS-analysis of the antisense strand, shown in Figure 7A, corresponds to the calculated mass of the strand with the following sequence:

5 ' -CCCCCUAAGCACGAAGCUCAGAGUUAAGCACGAAGCUCAGAGUCCCCC- 3 ' ( SEQ I D NO : 1 ) . The different ionization states are depicted. The MS-analysis of the sense strand, shown in Figure 7B, corresponds to the calculated mass of the strand with the following sequence:

ppp- 5 ' -GGGGGACUCUGAGCUUCGUGCUUAACUCUGAGCUUCGUGCUUAGGGGG- 3 ' ( SEQ I D NO : 2 ) . This strand bears a triphosphate moiety at its 5'-end. The different ionization states are shown. The present invention is further illustrated by the following non-limiting examples.

EXAMPLES

Example 1 : Secretion of IL-6 after stimulation with double-stranded RNA molecule having a triphosphate moiety at one 5' end

Cells were isolated from the blood of two healthy donors. All cell populations were sorted on two columns via the autoMACS system according to the recommendation of the

manufacturer (Miltenyi Biotech GmbH, Bergisch Gladbach, Germany). A detailed protocol for the isolation of 6-Sulfo LacNAc dendritic cells (slanDC) is described in Schaekel, K. et al. (1998); Eur. J. Immunol. 28, (p. 4084-4093). Briefly, myeloid dendritic cells (CD1 c+) were isolated after purifying the slanDC, monocytes were isolated by a negative selection strategy. Isolated cells were grown in RPMI 1640 medium containing 10% human AB serum (CCPRO, Neustadt, Germany), 2 mM L-glutamine, 1 % nonessential amino acids, 100 U/ml penicillin, and 100 mg/ml streptomycin (Biochrom AG, Berlin, Germany). Cells were then seeded in 96- well plates at a density of 25,000 cells/well in RPMI-1640 with 10% human AB serum.

Subpopulations of dendritic cells or monocytes were stimulated with 50 μg/ml Riboxxim®-48 or Riboxxim®-90 for 24 to 72 hours. The concentration of secreted IL-6 in the culture supernatant was assessed using ELISA.

Figure 3 shows the concentration of secreted IL-6 in the cell culture supernatant of dendritic cells and monocytes after incubation with Riboxxim®-48 (Fig. 3A) and Riboxxim-90 (Fig. 3B), respectively. Both nucleic acids strongly stimulate the secretion of IL-6 in all cell types. The data shown correspond to the mean values of three independent experiments with the respective standard error of the mean. Example 2: Secretion of IL-1 β after stimulation with double-stranded RNA with a triphosphate moiety at one 5' end is dose-dependent

Dendritic cells (slan DC and CD1 c+) and monocytes were isolated, sorted and grown as described in example 1. Cells were then seeded in 96-well plates at a density of 25,000 cells/well in RPMI-1640 with 10% human AB serum and incubated with 6.25 μς/ιτιΙ, 12.5 μg ml, 25 μg ml, or 50 μg ml Riboxxim®-90 or poly(l:C) for 24 to 72 hours. The concentration of secreted I L-1 β in the culture supernatant was assessed using ELISA.

Figure 4 shows the concentration of I L-1 β secreted by slanDC (Fig. 4A), CD1 c+ (Fig. 4B) and monocytes (Fig. 4C) after stimulation with increasing amounts of Riboxxim®-90 or poly(l:C). It is demonstrated that the secretion of I L-1 β in response to Riboxxim®-90 is dose- dependent in all three cell types, whereas poly(l:C) triggers a dose-independent and generally high secretion of I L-1 β, in particular in dendritic cells. The data shown correspond to the mean values of three independent experiments with the respective standard error of the mean.

Example 3: Secretion of IL-6 after stimulation with double-stranded RNA according to the invention bearing a triphosphate moiety at one 5' end is dose-dependent Dendritic cells (slan DC and CD1 c+) and monocytes were isolated, sorted and grown as described in example 1. Cells were then seeded in 96-well plates at a density of 25,000 cells/well in RPMI-1640 with 10% human AB serum and incubated with 6.25 μg ml, 12.5 μg ml, 25 μg ml, or 50 μg ml Riboxxim®-90 or poly(l:C) for 24 to 72 hours. The concentration of secreted IL-6 in the culture supernatant was assessed using ELISA.

Figure 5 shows the concentration of IL-6 secreted by slanDC (Fig. 5A), CD1 c+ (Fig. 5B) and monocytes (Fig. 5C) after stimulation with increasing amounts of Riboxxim®-90 or poly(l:C). It is demonstrated that the secretion of IL-6 in response to Riboxxim®-90 is dose-dependent in all three cell types, whereas poly(l:C) triggers a dose-independent and generally high secretion of IL-6, in particular in dendritic cells. The data shown correspond to the mean values of three independent experiments with the respective standard error of the mean.

Example 4: Comparison of IL-1 and IL-6 secretion after stimulation with double- stranded RNA according to the invention bearing a triphosphate moiety at one 5' -end with stimulation by not triphosphated dsRNA and poly(l:C) Monocytes from two different healthy donors were isolated, sorted and grown as described in example 1. Cells were then seeded in 96-well plates at a density of 25,000 cells/well in RPMI-1640 with 10% human AB serum and incubated with 6,25 g/ml, 12,5 g/ml, 25 ^glm\ or 50 μg ml dsRNA-90, Riboxxim®-90 or poly(l:C), respectively, for 24 to 72 hours. The concentrations of secreted of I L-1 β and IL-6 in the culture supernatant were assessed using ELISA. The results are shown in Fig. 6A ( IL-1 β) and Fig. 6B.

Triphosphated dsRNA of the invention (Riboxxim®-90) triggers a dose-dependent secretion of IL-1 β and IL-6. The stimulation is higher than the stimulation exerted by not triphosphated dsRNA or by poly(l:C).

The examples described above show that double-stranded RNA-molecules according to the invention trigger the secretion of cytokines such as IL-6 and IL-1 β in dendritic cells and monocytes. Moreover, dsRNA of the invention containing a free 5'-triphosphate group results in a strictly dose-dependent cytokine secretion which is stronger than the cytokine secretion stimulated by not triphosphated dsRNA or by poly(l:C). The capability of triggering a dose- dependent immune-response makes the double-stranded RNA-molecules according to the invention highly suitable to be utilized as RNA drugs for immunostimulation or adjuvants.