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Title:
BACTERIOPHAGE STRAINS, COMPOSITIONS AND RELATED METHODS
Document Type and Number:
WIPO Patent Application WO/2016/003307
Kind Code:
A1
Abstract:
Escherichia coli bacteriophage strains are disclosed together with anti-bacterial compositions and methods for producing bacteriophages. The described bacteriophages are lytically active against a broad range of pathogenic bacterial strains that are clinically important for humans. The bacteriophages and compositions therefore have particular utility in the treatment and prophylaxis of diseases in humans and animals and for uses as processing aids and disinfectants.

Inventors:
ALESHKIN ANDREY VLADIMIROVICH (RU)
RUBALSKY EVGENY OLEGOVICH (RU)
Application Number:
PCT/RU2014/000483
Publication Date:
January 07, 2016
Filing Date:
July 02, 2014
Export Citation:
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Assignee:
LTD LIABILITY COMPANY BPHAGE (RU)
International Classes:
A61K38/16; A61K38/46; C12N7/00
Domestic Patent References:
WO2008100273A12008-08-21
Foreign References:
CN101220349A2008-07-16
RU2425877C12011-08-10
KR101101376B12012-01-02
SU538025A11976-12-05
RU2425877C12011-08-10
Other References:
MONOD C ET AL: "The genome of the pseudo T-even bacteriophages, a diverse group that resembles T4", JOURNAL OF MOLECULAR BIOLOGY, ACADEMIC PRESS, UNITED KINGDOM, vol. 267, no. 2, 28 March 1997 (1997-03-28), pages 237 - 249, XP004462554, ISSN: 0022-2836, DOI: 10.1006/JMBI.1996.0867
JULIE E. SAMSON, MAXIME BÉLANGER AND SYLVAIN MOINEAU: "Effect of the Abortive Infection Mechanism and Type III Toxin/Antitoxin System AbiQ on the Lytic Cycle of Lactococcus lactis Phages", JOURNAL OF BACTERIOLOGY, vol. 195, no. 17, September 2013 (2013-09-01) - September 2013 (2013-09-01), pages 3947 - 3956, XP002738926
K.A. SOUZA; H.S. GINOZA; R.D. HAIGHT: "Isolation of a polyvalent bacteriophage for Escherichia coli, Klebsiella pneumoniae, and Aerobacter aerogenes", JOURNAL OF VIROLOGY, vol. 9, no. 5, 1972, pages 851 - 856
S. WELKOS; M. SCHREIBER; H. BAER: "Identification of Salmonella with the 0-1 bacteriophage", APPLIED MICROBIOLOGY, vol. 28, no. 4, 1974, pages 618 - 622
L. PLANELLES; C. MARANON; J.M REQUENA; M.C. LOPEZ: "Phage recovery by electroporation of naked DNA into host cells avoids the use of packaging extracts", ANALYTICAL BIOCHEMISTRY, vol. 267, no. 1, 1999, pages 234 - 235
"Antibacterial, antiviral and serum preparations for treatment and prophylaxis. Allergens. Disinfection and sterilization regulations for clinics", SPB., FOLIANT, 1998, pages 180 - 244
Attorney, Agent or Firm:
LAW FIRM "GORODISSKY & PARTNERS" LTD (POPOVA Elizaveta Vitalievna et al.B. Spasskaya Str., 25, bldg, Moscow 0, RU)
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Claims:
Claims

1. An Escherichia coli bacteriophage strain deposited at DSMZ with deposit accession number DSM 28572 or DSM 28789.

2. An Escherichia coli bacteriophage strain comprising a nucleic acid sequence at least 90%, 93%, 96%, 99% or 100% identical to SEQ ID NO:1 or SEQ ID NO:4.

3. A nucleic acid sequence encoding the genome of a bacteriophage comprising a sequence at least 90%, 93%, 96%, 99% or 100 % identical to SEQ ID NO:1 or SEQ ID NO:4.

4. An endolysin protein obtainable from a strain according to Claim 1 or 2 comprising a sequence of amino acids at least 90 %, 93 %, 96%, 99% or 100 % identical to SEQ ID NO:2 or SEQ ID NO:5.

5. A nucleic acid encoding a protein according to claim 4.

6. A nucleic acid according to claim 5 comprising a nucleotide sequence at least 90 %, 93 %, 96%, 99% or 100 % identical to SEQ ID NO:3 or SEQ ID NO:6.

7. An antibacterial composition comprising at least one bacteriophage strain of claim 1 or 2 and one or more additives.

8. An antibacterial composition comprising at least one endolysin of claim 4 or from a bacteriophage strain of claim 1 or 2.

9. A composition according to claim 7 or 8 further comprising one or more bacteriophages selected from the group: Staphylococcus bacteriophage, Salmonella enteritidis bacteriophage, Salmonella infantis bacteriophage, Salmonella typhimurium bacteriophage, Listeria

bacteriophage or mixtures thereof.

10. A composition according to claim 7, 8 or 9 comprising one or more additives selected from the group: licorice root syrup, apple pectin, glycine, buffer solution, pharmaceutically acceptable carrier, excipient, adjuvant, or mixtures thereof.

11. A composition according to claim 10 comprising a buffer solution acceptable for food industries or health-care facilities in the amount of 1 to 95 % of the composition volume.

12. A composition according to any of claims 7 to 11 suitable for prophylaxis and/or treatment of human or animal infectious diseases or for decontamination of food raw materials or semi-finished or finished food products, or food storage containers, or equipment for food production, or work surfaces, or food production facilities or medical tools or equipment, or equipment of health facilities, or premises of health care facilities. 13. A composition according to any one of claims 7, 8 or 9 comprising one or more additives selected from the group: glucose, lactose and fumed silica, or mixtures thereof.

14. A composition according to any one of claims 7, 8, 9 or 13 encapsulated in a hard-shelled capsule and suitable for prophylaxis and/or treatment of human or animal infectious diseases.

15. A composition according to any one of claims 7, 8 or 9 comprising one or more additives selected from the group: glucose, solid fat, emulsifier, paraffin, or mixtures thereof.

16. A composition according to any one of claims 7, 8, 9, or 15 in the form of suppository suitable for prophylaxis and/or treatment of human or animal infectious diseases.

17. A method for obtaining a bacteriophage comprising the steps of:

(i) inoculating a bacterial host strain at a titer of 108 - 109 CFU/ml and cultivating it up to log phase in a cultivation vessel with solid growth medium; (ii) inoculating the resulting lawn culture of the host strain with the bacteriophage strain at a titer of 105-106 pfu/ml, sealing the cultivation vessel and cultivating the bacteriophage strain culture under a layer of air;

(iii) then obtaining a phage lysate suspension by treating the culture with a physiological solution or a buffer solution with a pH of 6.3 - 7.5;

(iv) mixing the phage lysate suspension with an organic solvent and subjecting the mixture to centrifugation;

(v) filtering the resulting supernatant and subsequently passing the supernatant through a column containing an agent with an affinity to one or more endotoxins.

18. A method according to claim 17 wherein the solid growth medium has a thickness of 10-25mm and the layer of air has a thickness of 25-40mm over the surface of the solid growth medium. 19. A method according to claims 17 or 18 wherein the supernatant is filtered through a filter with a pore size of 0.20 to 0.22 pm.

20. A method according to any one of claims 17 to 19, wherein one or more additional phage lysates are mixed with the supernatant prior to filtration.

21. A method according to any one of claims 17 to 20 wherein the cultivation vessel is a glass mattress flask.

22. A method according to any one of claims 17 to 21 wherein the bacterial host strain is not pathogenic for humans or animals and the bacteriophage strain has been previously passaged through a culture of a second host strain that is pathogenic for humans or animals.

23. A method according to any of claims 17 to 22 wherein the bacterial host strain is inoculated with a bacteriophage strain according to claim 1 or 2.

24. A method according to claim 22 wherein the bacteriophage strain has accession number DSM 28572 or comprises a nucleic acid sequence at least 90%, 93%, 96%, 99% or 100% identical to SEQ ID NO:1 and the second host strain is Escherichia coli serotype 0104:1-14.

25. A method according to claim 22 wherein the bacteriophage strain has accession number DSM 28789 or comprises a nucleic acid sequence at least 90%, 93%, 96%, 99% or 100% identical to SEQ ID NO:4 and the second host strain is Escherichia coli serotype 0157:H7.

26. A method according to any one of claims 23 to 25 wherein the bacterial host strain is Escherichia coli K12C600.

Description:
BACTERIOPHAGE STRAINS, COMPOSITIONS AND RELATED METHODS Field of invention

The invention relates to bacteriophage strains, antibacterial compositions, methods for preparing these and their use in the food, pharmaceutical and healthcare industries. The invention has particular application in the treatment and prophylaxis of diseases in humans and animals and for uses as processing aids and disinfectants.

Background of invention

The spread of antibiotic resistant bacteria is an increasing problem, especially in the area of chronic disease. Bacteriophages have been used for a wide range of antibacterial applications, including bio-control in the food industry and for the prophylaxis and treatment of diseases in humans and animals. A problem with known antibacterial compositions containing bacteriophages is the necessity of inclusion in the composition of a wide variety of species and/or strains of bacteriophages in order to broaden the spectrum of their specific activity. This problem results from the absence of bacteriophages with lytic activity against a broad range of pathogenic bacterial strains that are clinically important for humans or that have lytic activity against several bacterial species (referred herein as polyvalent bacteriophages). A further problem with known compositions is retaining suitable titer in storage.

There are known bacteriophages with a lytic activity against several bacterial species (polyvalent bacteriophages), e.g. bacteriophage φηιρ, which lyses Escherichia coli, Klebsiella pneumonia and Aerobacter aerogenes (K.A. Souza, H.S. Ginoza, R.D. Haight: Isolation of a polyvalent bacteriophage for Escherichia coli, Klebsiella pneumoniae, and Aerobacter aerogenes. Journal of Virology, 1972, Vol. 9, No. 5, p851-856) and bacteriophage 0-1 , which lyses Salmonella serotypes and Escherichia coli (S. Welkos, M. Schreiber, H. Baer:

Identification of Salmonella with the 0-1 bacteriophage. Applied Microbiology, 1974, Vol. 28, No. 4, p618-622).

The main disadvantage of these existing polyvalent bacteriophages is that they are not sufficiently active against a wide range of pathogens. As such they are not widely applicable as a means for prophylaxis and treatment of infectious diseases in humans and animals, for biocontrol and bioprocessing in food production, and for decontamination of medical tools or clinical facilities and equipment. Korean patent filing KR 101101376 refers to a bacteriophage strain as an active component of a drug for prophylaxis and treatment of diseases caused by Escherichia coli or Shigella sonnei. However, the strain is not sufficiently active against the wide range of pathogens (including Escherichia coli serotypes O104:H4, 0157:H7, as well as Shigella flexneri). In addition, the disclosed compositions do not address the problem of stabilizing the bacteriophage titer in storage.

Summary of the Invention

Accordingly the present invention provides improved bacteriophage strains, compositions, methods of preparation and uses against bacteria which may be antibiotic resistant. In one aspect the invention provides an Escherichia coli bacteriophage strain which has been deposited at Leibniz-lnstitut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ), Inhoffenstr. 7B, 38124 Braunschweig, Germany with deposit accession number DSM 28572 on 14 th March 2014 in accordance with the Budapest Treaty for the International Recognition of the Deposit of Microorganisms for the Purposes of Patent Procedure (known hereinafter as bacteriophage strain no. BPhEd) or an Escherichia coli bacteriophage strain which has been deposited at DSMZ with deposit accession number DSM28789 on 9 th May 2014 (known hereinafter as bacteriophage strain no. BPhEc2). In a further aspect of the invention there is provided an Escherichia coli bacteriophage strain comprising a nucleic acid sequence at least 90%, 93%, 96%, 99% or 100% identical to SEQ ID NO:1 or SEQ ID NO:4. In one aspect, the invention provides a nucleic acid sequence encoding the genome of a bacteriophage comprising a sequence at least 90%, 93%, 96%, 99% or 100 % identical to SEQ ID NO:1 or SEQ ID NO:4. In a further aspect of the invention, there is provided an antibacterial composition comprising at least one bacteriophage strain of the invention and one or more additives. Preferably the antibacterial composition comprises bacteriophage strain BPhEd and bacteriophage strain BPhEc2.

In another aspect, the invention provides an endolysin protein obtainable from a strain of the invention comprising a sequence of amino acids at least 90 %, 93 %, 96%, 99% or 100 % identical to SEQ ID NO:2 or SEQ ID NO:5, and nucleic acids encoding these endolysin proteins. In one embodiment of the invention, the nucleic acid comprises a nucleotide sequence at least 90 %, 93 %, 96%, 99% or 100 % identical to SEQ ID NO:3 or SEQ ID NO: 6. In a further aspect of the invention there is provided an antibacterial composition comprising at least one endolysin of the invention The antibacterial compositions may further comprise one or more bacteriophages selected from the group: Staphylococcus bacteriophage, Salmonella enteritidis bacteriophage, Salmonella infantis bacteriophage, Salmonella typhimurium bacteriophage, Listeria

bacteriophage or mixtures thereof.

The composition may comprise one or more additives selected from the group: licorice root syrup, apple pectin, glycine, buffer solution, pharmaceutically acceptable carrier, excipient, adjuvant, or mixtures thereof. Preferably, the additives may be selected from the group licorice root syrup, apple pectin, glycine. For example, the composition may comprise a buffer solution acceptable for food industries or health-care facilities in the amount of 1 to 95 % of the composition volume. Preferably, the composition is suitable for prophylaxis and/or treatment of human or animal infectious diseases or for decontamination. For example, the composition may be used for decontamination of food raw materials or semi-finished or finished food products, or food storage containers, or equipment for food production, or work surfaces, or food production facilities or medical tools or equipment, or equipment of health facilities, or premises of health care facilities.

The composition may comprise one or more additives selected from the group:

glucose, lactose and fumed silica, or mixtures thereof. Furthermore, the composition may comprise one or more additives selected from the group: glucose, solid fat, emulsifier, paraffin, or mixtures thereof. Compositions suitable for prophylaxis and/or treatment of human or animal infectious diseases may be prepared in water or buffer solution or may be prepared in other forms, for example encapsulated in a capsule, such as a hard-shelled capsule, or in the form of a suppository.

In one aspect of the invention, there is provided an antibacterial composition comprising at least one bacteriophage strain and / or at least one endolysin of the invention for use as a medicament. In a further aspect of the invention, there is provided an antibacterial composition comprising at least one bacteriophage strain and / or at least one endolysin of the invention for the treatment or prophylaxis of a bacterial infection in humans or animals. In another aspect there is provided a pharmaceutical composition comprising at least one bacteriophage strain and / or at least one endolysin of the invention in a pharmaceutically acceptable carrier. In a further aspect there is provided a method of treatment of a bacterial infection in humans, such as an infection caused by Escherichia coli, comprising administering a therapeutically effective amount of an anti-bacterial composition comprising at least one bacteriophage strain of the invention to a patient suffering from a bacterial infection. In another aspect there is provided a prophylactic method of treatment of humans comprising

administering a prophylactically effective amount of an anti-bacterial composition comprising at least one bacteriophage strain of the invention. Preferably, in liquid compositions the one or more bacteriophage strains each have a lytic activity of at least 10 6 pfu per ml of the

composition against test strains, such as Escherichia coli 0104:1-14 and K12 C600. Preferably, in compositions in the form of a capsule or suppository, the one or more bacteriophage strains each have a lytic activity of at least 10 6 pfu per capsule or suppository against test strains.

In a further aspect of the invention there is provided a method for obtaining a bacteriophage comprising the steps of (i) inoculating a bacterial host strain at a titer of 10 8 - 10 9 CFU/ml and cultivating it up to log phase in a cultivation vessel with solid growth medium; (ii) inoculating the resulting lawn culture of the host strain with the bacteriophage strain at a titer of 10 5 -10 6 pfu/ml, sealing the cultivation vessel and cultivating the bacteriophage strain culture under a layer of air; (iii) then obtaining a phage lysate suspension by treating the culture with a physiological solution or a buffer solution with a pH of 6.3 - 7.5; (iv) mixing the phage lysate suspension with an organic solvent that is immiscible with water and subjecting the mixture to centrifugation and (v) filtering the resulting supernatant and subsequently passing the supernatant through a column containing an agent with an affinity to one or more endotoxins. The organic solvent may be denser than water, and may have a lower boiling point than water, and for example may be chloroform.

Preferably, the solid growth medium has a thickness of 10-25mm and the layer of air has a thickness of 25-40mm over the surface of the solid growth medium. The cultivation vessel may, for example be a glass mattress flask. Preferably, the supernatant is filtered through a filter with a pore size of 0.20 to 0.22 μιτι. One or more additional phage lysates may be mixed with the supernatant prior to filtration. In a further embodiment, the host strain is not pathogenic for humans or animals and the bacteriophage strain has been previously passaged through a culture of a second host strain that is pathogenic for humans or animals. The bacterial host strain may be inoculated with a bacteriophage strain according to the invention. Preferably, the bacterial host strain is Escherichia coli K12C600. The bacteriophage strain BPhEd may have been previously passaged through a culture of

Escherichia coli serotype O104:H4. The bacteriophage strain BPhEc2 may have been previously passaged through a culture of Escherichia coli serotype 0157:1-17. A particular advantage of the present invention is the simplification of the contents of phage-based antibacterial compositions while achieving the necessary spectrum of specific activity and selection of specific additives able to secure titer stability in storage, for example for 2 years in a liquid form and up to 5 years in a freeze-dried form.

According to the present invention improved compositions are provided by the inclusion in the antibacterial composition of an Escherichia coli bacteriophage strain BPhEd (deposit number DSM 28572) and / or Escherichia coli bacteriophage strain BPhEc2 (deposit number DSM 28789). Preferably, compositions comprise both BPhEd and BPhEc2 as the host range activities of each strain have been found to be complementary.

Depending on the desired range of the lytic activity, the composition may further comprise one or more virulent bacteriophages selected from: a Staphylococcus

bacteriophage, such as a Staphylococcus aureus bacteriophage, a Salmonella enteritidis bacteriophage, a Salmonella infantis bacteriophage, a Salmonella typhimurium bacteriophage, a Listeria bacteriophage, such as a Listeria monocytogenes bacteriophage, or mixtures thereof. Preferably, in liquid compositions each of the bacteriophages have a lytic activity of at least 10 6 pfu per mL of the composition against susceptible test strains and human bacteria isolates.

Compositions used for prophylaxis and treatment of infectious diseases in humans and animals may comprise one or more specific additives in the amount of 0.005 to 99.9% wt of the composition volume. Additives may be selected from the group: licorice root syrup, apple pectin, glycine, buffer solution, pharmaceutically acceptable carrier, excipient, adjuvant, or mixtures thereof. Compositions in liquid form, for example in water or buffer solution such as phosphate buffered saline, may comprise at least one bacteriophage of the invention and additives, such as licorice root syrup and /or apple pectin and /or glycine, in an amount that results in the composition having a stable lytic activity, for example for a period of around one year or more. Licorice root syrup may be suitable for antispasmodic, enveloping properties and for improvement of organoleptic (taste) properties. Licorice root syrup may be present in the range 0.01 to 50.0% wt of the composition, for example between 1 and 10% wt. Apple pectin may be suitable as a toxin sorbent and viscosity regulator. This additive may be present, for example in the range 0.005% to 6.0% wt of the composition, such as 0.005 to 2% wt or 0.005 to 0.015% wt. Glycine may be suitable as a stabilizer of phage titer in storage and an antioxidant. This additive may be present, for example, in the range 0.005 to 21 % wt, for example 0.005 to 20.2% wt, 0.005 to 10% wt, 0.005 to 2% wt or 0.005 to 0.015% wt of the composition. Compositions may comprise at least one bacteriophage of the invention and the additives licorice root syrup (1-10%wt), apple pectin (0.005 - 2%wt) and glycine (0.005 - 2% wt) in water or buffer solution. Additives may be used to produce compositions suitable for use as a suppository. For example, additives may be selected from the group: glucose, solid fat, emulsifier, paraffin, and water. Glucose may be present in the range 1-2% wt of the composition. Solid fat, such as SolPro, may be present in the range 60-80% wt of the composition. Emulsifier, such as T-2, may be present in the range 5-7% of the composition. Paraffin may be present in the range 5- 7% of the composition. An antibacterial composition may comprise, for example, (%wt of the composition) 5-15% of a phage lysate filtrate comprising at least one bacteriophage of the invention, 1-2% of glucose, 60-80% of solid fat, 5-7% of emulsifier, 5-7% of paraffin and 7-10% of water. Compositions may also comprise at least one bacteriophage of the invention in freeze- dried form. The bacteriophage in freeze-dried form may comprise suitable additives, such as saccharose and / or gelatin. Additives may also be used to produce compositions suitable for encapsulation in a capsule. For example, additives may be selected from the group glucose, lactose and fumed silica. Glucose may be present in the range 2-5% wt of the composition. Lactose may be present in the range 35-62.5% wt of the composition. Fumed silica, such as Aerosil A300, may be present in the range 0.5-1.0%. An antibacterial composition may comprise, for example, (%wt of the composition) 35-50% of freeze-dried bacteriophage, 2-5% of glucose, 0.5-1.0% of fumed silica, and the remainder (35-62.5%) of lactose. Compositions used for decontamination of food raw materials or semi-finished or finished food products, or containers for storage, equipment for food production, or work surfaces, or food production facilities may include a buffer solution acceptable for food industries in the amount of 1 to 95% of the composition volume. Compositions used for the decontamination of medical tools, equipment or facilities may include a buffer solution acceptable for healthcare facilities in the amount of 1 to 95% of the composition volume.

Antibacterial compositions may include various buffer solutions for maintaining the pH at 6.8 - 7.8 and acceptable in specific applications, such as for the treatment and prevention of human and animal diseases and as disinfectants. The Escherichia coli bacteriophage strain BPhEd was isolated from faeces of broiler chickens in a bacterial culture of the Escherichia coli strain O104:H4 N°112027 and has been deposited at DSMZ with deposit accession number DSM 28572 on March 14, 2014. The 5 Escherichia coli bacteriophage strain BPhEd can be characterized by the following

properties:

- it has a polyvalent lytic activity against enterohaemorrhagic strains of Escherichia coli serotypes O104:H4, 0157:H7, and Escherichia co// of some other clinically significant serogroups indicated in Table 1. It also lyses some bacterial strains of the human dysentery l o agents Shigella sonnei and Shigella flexneri;

- it does not suppress the growth of the Escherichia coli strain M-17 which is non-pathogenic for humans;

- it forms cloudy negative colonies 1-2 mm in diameter on a sensitive bacterial strain.

15 The genome of the Escherichia coli bacteriophage strain BPhEd was sequenced

(nucleotide sequence SEQ ID NO:1) and passed bioinformatic analysis. It was ascertained that it is free of the genes encoding known toxins (stxl , stx2, eaeA, hlyA) and the genes responsible for the lysogenic type of the phage infection (integrases, repressor proteins etc.). During storage or subculture, including in deposit collections, the genome of Escherichia coli

20 phage strain BPhEd may undergo natural mutagenesis, which will not alter the encoded proteins or ribonucleic acids functionally or structurally. Accordingly the present invention includes the genome of an Escherichia coli bacteriophage strain having a nucleotide sequence from about 90 % to about 100 % identical to SEQ ID NO:1 , for example a sequence at least 90%, 93%, 96%, 99% or 100% identical to SEQ ID NO:1.

25

The Escherichia coli bacteriophage strain BPhEc2 was isolated from cowshed effluent and has been deposited at DSMZ with deposit accession number DSM 28789 on May 9 th , 2014. The Escherichia coli bacteriophage strain BPhEc2 can be characterized by the following properties:

30 - it has a lytic activity against enterohaemorrhagic strains of Escherichia coli serotypes

0157:H7, 0157:Η " indicated in Table 1;

- it does not suppress the growth of the Escherichia coli strain M-17 which is non-pathogenic for humans;

- it forms round plaques 1.5-2.0 mm in diameter with transparent lysis and smooth edges on a 35 sensitive bacterial strain. The genome of the Escherichia coli bacteriophage strain BPhEc2 was sequenced (nucleotide sequence SEQ ID NO:4) and passed bioinformatic analysis. It was ascertained that it is free of the genes encoding known toxins (stxl , stx2, eaeA, hlyA) and the genes responsible for the lysogenic type of the phage infection (integrases, repressor proteins etc.). During storage or subculture, including in deposit collections, the genome of Escherichia coli phage strain BPhEc2 may undergo natural mutagenesis, which will not alter the encoded proteins or ribonucleic acids functionally or structurally. Accordingly the present invention includes the genome of an Escherichia coli bacteriophage strain having a nucleotide sequence from about 90 % to about 100 % identical to SEQ ID NO:4 , for example a sequence at least 90%, 93%, 96%, 99% or 100% identical to SEQ ID NO:4.

The nucleic acids which encode the genome of the virulent bacteriophages and which are a nucleotide sequence from 90 % to 100 % identical to SEQ ID NO:1 or SEQ ID NO:4, for example a sequence at least 90%, 93%, 96%, 99% or 100% identical to SEQ ID No.1 or SEQ ID NO:4, can be transformed into a sensitive bacterial cell (for example, into Escherichia coli strain K12C600) with a subsequent generation of a bacteriophage. The term "transformation" means the process of cellular uptake of free DNA molecules from the environment. At a technical level there is a known method of transformation of bacteriophage DNA into a sensitive bacterial cell with subsequent development therein of lytic phage infection (L.

Planelles, C. Maranon, J.M Requena, M.C. Lopez, Phage recovery by electroporation of naked DNA into host cells avoids the use of packaging extracts. Analytical biochemistry, 1999, Vol. 267, No.1 , p. 234-235).

Escherichia coli bacteriophage strains BPhEd and BPhEc2 produce the protein endolysin. The term "endolysin" is a generic term common for bacteriophage enzymes that destroy cell membranes and peptidoglycan bacteria. An endolysin of Escherichia coli

bacteriophage strain BPhEd is encoded by a nucleic acid comprising a nucleotide sequence from 90 % - 100 % identical to SEQ ID NO:3, for example a nucleotide sequence at least 90%, 93%, 96%, 99% or 100% identical to SEQ ID No:3. An endolysin protein obtainable from the Escherichia coli bacteriophage strain BPhEd comprises a sequence of amino acids at least 90%, 93%, 96%, 99% or 100 % identical to SEQ ID NO:2. An endolysin of Escherichia coli bacteriophage strain BPhEc2 is encoded by a nucleic acid comprising a nucleotide sequence from 90 % - 100 % identical to SEQ ID NO:6, for example a nucleotide sequence at least 90%, 93%, 96%, 99% or 100% identical to SEQ ID No. 6. An endolysin protein obtainable from the Escherichia coli bacteriophage strain BPhEc2 comprises a sequence of amino acids at least 90%, 93%, 96%, 99% or 100 % identical to SEQ ID NO:5. The present invention encompasses other endolysins of Escherichia coli

bacteriophage strain BPhEd and / or BPhEc2 or a fragment, analogue or functional derivative thereof having endolysin activity. Compositions for anti-bacterial use may comprise at least one endolysin of the Escherichia coli bacteriophage strain BPhEd and / or BPhEc2 and / or comprising a sequence of amino acids at least 90%, 93%, 96%, 99% or 100 % identical to SEQ ID NO:2 or SEQ ID NO:5.

The percentage identity between two nucleotide sequences or between two amino acid sequences is a function of the number of identical positions shared by the sequences, taking into account the number of gaps which need to be introduced for optimal alignment and the length of each gap. Various computer programs (e.g. BioEdit, Geneious) and mathematical algorithms (e.g. ClustalW, MUSCLE, MAFFT) are available in this area to determine identity percentages between two nucleotide sequences or between two amino acid sequences.

Anti-bacterial compositions of the invention may further comprise a staphylococcus bacteriophage, salmonellosis bacteriophage or listeriosis bacteriophage. The composition may also include any bacteriophages with their respective specific activities in the form of phage lysates (phage lysate filtrates), suitable for making preparations for prophylaxis and treatment of human or animal infectious diseases or for decontamination of food raw materials or semi-finished or finished food products, or food storage containers, equipment for food production, or work surfaces, or food production facilities or medical tools or equipment, or equipment of health facilities, or premises of health care facilities (for example as described in: Antibacterial, antiviral and serum preparations for treatment and prophylaxis. Allergens.

Disinfection and sterilization regulations for clinics. SPb., Foliant, 1998, p180-244; SU patent 538025, WO application 2008/100273 and RU patent 2425877).

The Staphylococcus bacteriophage of the composition may be represented by a bacteriophage virulent to clinical strains of Staphylococcus aureus, including MRSA strains (methycillin-resistant strains of Staphylococcus aureus). The salmonellosis bacteriophage of the composition of the present invention may be represented by bacteriophages active against Salmonella enteritidis (including the strains SE6, SE19 and/or SE40), against Salmonella typhimurium and/or against Salmonella infantis. The listeriosis bacteriophage of the composition may be represented by a bacteriophage able to lyse Listeria monocytogenes (for example, strains 2, 6, 660, 944, 4908, 4909, 4910, 4913, 4944, 7973, 10522, 766GISC, 4IP, 12IP, 16IP, 20IP, 46IP, 53IP, 61 IP, 766IP, Aorig., C20/10357, C-52, C-212, EGD, EGDe, Gim03, M-5, M-6).

A list of test-strains that may be lysed by the phage lysate filtrates of the antibacterial composition include: Escherichia coli strain K12 C600, Escherichia coli serotype 0157:H7 strain 1330, Escherichia coli serotype 0157:H7 strain ATCC 51658, Escherichia coli serotype 0157:H7 strain 4, Escherichia coli serotype 0157:H7 strain T 5133, Escherichia coli serotype 078 strain 3001 ; Staphylococcus aureus strains 2075, FRI-722, 1789 WOOD, 209-P;

Salmonella enteritidis strains M4, 1540, 9, 10, 14, 29, 31 , 37, 47, 48, 53, 60, 85, 89, 92, 93, 109, 111 , 114 m-, 121 , 124, 126, 127, 128, 132, 137, 139, 140 g-, 141; Salmonella

typhimurium strain ΤΓ 1 ; Salmonella infantis strain 1271 ; Listeria monocytogenes strains EGDe, Gim03, 7973, C20/10357, C-52, Aorig., EGD, M-6, 12IP, 20IP, 4908, 4944, 944, C- 212, 6, M-3, 2, 16IP, 660, 4909, 4913, 766 GISC, 61 IP, 53IP, M-5, 766IP, 46IP, 10522, 4IP, 4910, WSLC 1001.

Compositions comprising at least one bacteriophage strain of the invention may be used for the treatment or prophylaxis of bacterial infections, such as an infection caused by Escherichia coli, for example Escherichia coli serotype 0104:1-14. Preferably, the treatment of a patient with a bacterial infection is carried out for a period between 7 and 30 days. More preferably, the treatment period is between 14 and 21 days. Typically, if no effect is observed after 10 days then the treatment with the composition is terminated. If an improvement is observed then the maximum dosage period is typically 30 days. The treatment may then be suspended, for example for a period of 14 days, and the treatment course repeated. For prophylactic effect, the composition is typically administered for a period between 2 and 7 days. During the treatment period the composition may be administered, for example, between 2 and 3 times a day.

For oral administration in liquid form a patient may be administered with an antibacterial composition with a volume of between 30 and 50ml_ wherein the at least one bacteriophage of the invention are each present in the composition at a lytic activity of at least 10 6 pfu per mL of the composition, tested against bacterial test strains such as Escherichia coli 0104:1-14 and K12 C600. The volume of the composition may be varied depending on the lytic activity of the bacteriophage within the composition. The anti-bacterial composition may also be orally dosed in a freeze dried form, for example in a capsule, such as a hard-shelled capsule. Preferably, each of the at least one bacteriophage of the invention has a lytic activity of at least 10 6 pfu per capsule. The anti-bacterial composition may also used in the form of a suppository. Preferably, each of the at least one bacteriophage of the invention has a lytic activity of at least 10 s pfu per suppository.

The present invention provides a method for producing bacteriophages which is suitable for producing various types of bacteriophages, such as BPhEd and BPhEc2. This method of phage lysate preparation enables effective cultivation of bacteriophages and a stable high titer of 10 11 -10 13 pfu/ml to be obtained, making it easier to produce antibacterial compositions with a consistent titer of the bacteriophages included therein. During the preparation the phage lysate is purified of endotoxins. Bacteriophages of the invention may be produced as described hereinafter.

The bacteriophages may be prepared using a susceptible bacterial host strain that is not pathogenic for humans or animals, for example for BPhEd and BPhEc2 Escherichia coli K12 C600 may be used. The host strain is inoculated at a titer of 10 8 - 10 9 CFU (colony- forming units) and cultivated up to log phase in a cultivation vessel with solid growth medium, such as a slant solid growth medium. Preferably the host strain is inoculated on a growth medium with a thickness of 10 - 25 mm. The cultivation may be carried out in a suitable vessel. Preferably, cultivation is carried out in a glass mattress flask due to its optical properties and thermal conductivity. The host strain is cultivated at an optimal temperature for the strain, for example 37°C for Escherichia coli K12 C600, up to log phase. The host strain is cultivated, for example, for a period of 3 - 3.5 hours.

The resulting lawn culture of the host strain is inoculated with the bacteriophage strain at a titer of 10 5 - 10 6 pfu/mL. The bacteriophage strain may have previously been passaged through a culture of a host strain that is pathogenic for humans or animals. For example in the case of the Escherichia coli bacteriophage strain BPhEd , the bacteriophage may have previously been passaged through an Escherichia coli serotype O104:H4 culture. In the case of BPhEc2, the bacteriophage may have been previously passaged through an Escherichia coli serotype 0157:1-17 culture. The cultivation vessel is then hermetically sealed, and the bacteriophage strain culture is cultivated under a layer of air. Preferably the layer of air is 25-

40mm thick over the surface of the solid growth medium. The culture is cultivated at an optimal temperature for growing a bacteriophage strain culture, for example at a temperature of 37°C. Preferably, the culture is cultivated for a period of 13 -15 hours. After cultivation, a phage lysate suspension is obtained by treating the culture with a physiological solution or a buffer solution with a pH of 6.3 to 7.5, for example between pH 7.0 - 7.2. Preferably the buffer solution is in the quantity 0.04 - 0.09 ml per 1 cm 2 of the medium surface, such as 0.040 - 0.045 ml. The phage lysate is then transferred into a sterile container and a water-immiscible organic solvent added. The organic solvent may be chloroform. The mixture may then be incubated, for example with continuous shaking for a period of about 30- 45 minutes, and then subjected to centrifugation, for example for 30 - 45 minutes at 5000 - 6000 rpm.

The resulting supernatant is then filtered, for example to remove any bacteria, including phage-resistant bacteria. Preferably the filter has a pore size of 0.20 to 0.22 μητι which enables efficient filtration of the phage lysate. If required, the supernatant may be initially be passed through a filter with a pore size of 0.40 to 0.50 μιτι, for example 0.45 μητι, and then passed through a filter with a pore size of 0.20 to 0.22 pm. The filtrate is then passed through a column containing an agent with an affinity to one or more endotoxins. After passing through the column, the refined phage lysate should have an acceptable level of endotoxins, for example less than 50 units of endotoxin per ml of refined phage lysate (EU/mL).

In order to provide compositions comprising more than one bacteriophage, the supernatants may be mixed with one or more additional phage lysates prior to filtration, or may be mixed after filtration.

The present invention provides the use of virulent bacteriophages lytically active against a broad range of pathogenic bacterial strains that are clinically important for humans. The invention enables simplification of the formulation of anti-bacterial compositions. The composition may also include additional monovalent virulent bacteriophages to achieve the desired range of specific activity for a given purpose. Additives may be used to stabilize the bacteriophages' lytic activity.

The present invention will be described in more detail and with reference to non-limiting examples. The examples demonstrate the possibility of simplification of the formulation of the antibacterial compositions based on bacteriophages, while retaining the ability to achieve the desired range of specific activity by inclusion as an active ingredient at least one

bacteriophage of the invention. The described compositions contain a number of

bacteriophage strains in order to provide a broad spectrum of activity against food borne infections (which is important, for example, in clinical situations when the cause of an infection is not immediately identifiable). The examples include application of the composition to bacterial infections caused by E.coli strains specifically lysed by the bacteriophage strains of the invention and also the treatment or prophylaxis of other bacterial infections showing the broad utility of the described compositions.

The examples also include preparation of an Escherichia coli phage lysate containing a Escherichia coli bacteriophage strain, assessment of the range of antibacterial action, assessment of the effect of bacteriophages of the antibacterial composition on industrial strains of lactobacilli, bifidobacteria and normal intestinal microflora, and further specific applications of the claimed invention.

EXAMPLES

Example 1. Obtaining a phage lysate of Escherichia coli containing a polyvalent Escherichia coli bacteriophage strain BPhEd.

One milliliter of night broth culture of Escherichia coli K12 C600 was mixed with 4 ml LB broth (10 g of Bacto™ tryptone, 5 g of Bacto™ yeast extract and 10 g of sodium chloride per 1 litre of the medium) and 10 μΙ suspension of Escherichia coli bacteriophage strain BPhEd at 10 9 pfu/ml. The mixture was incubated in a shake flask at 37°C until the bacterial culture acquired a lighter shade, then 0.5 ml chloroform was added and the mixture was stirred vigorously for 20 minutes. Bacterial cell fragments were then removed by low speed centrifugation (10 000 g, 15 min) and the phage lysate was titered using the double-layered agar technique (agar overlay method). The concentration of phage lysate was measured in plaque forming units (pfu) per 1 ml of phage lysate. The resulting phage lysate had a bacteriophage concentration of 10 9 pfu/ml.

A phage lysate of Escherichia coli bacteriophage strain BPhEc2 was also obtained using the same method as described above. The resulting phage lysate had a bacteriophage concentration of 10 10 pfu/ml.

Example 2. Testing the spectrum of antibacterial activity of the bacteriophage strains BPhEd and BPhEc2 (host range activity).

The spectrum of antibacterial activity of the Escherichia coli bacteriophage strains BPhEd and BPhEc2 were tested using the spot test method. For this purpose, 0.5 ml doses of night broth bacterial culture, as indicated in Table 1 , were mixed with 4 ml of semisolid agar (LB broth containing 0.7% of agar) at 47°C and distributed on the surface of nutrient agar (e.g. Nutrient Agar, HIMEDIA) in a Petri dish. After 20 minutes, a drop of a bacteriophage strain (10 7 pfu/ml) (obtained according to the method of Example 1) was applied on the surface and incubated at 37°C during the night. When the dishes with susceptible bacterial cultures were examined visually, no bacterial lawn growth was found in the areas where the bacteriophage strain had been introduced (clear regions of lysis). In all of the other cases no such areas were detected. Table 1 - Host range activity of Escherichia coli bacteriophage strains BPhEd and BPhEc2 (spot tests) Lytic activity of Lytic activity of

Bacterial strains

BPhEd strain BPhEc2 strain

Escherichia coli 0104:1-14 Ns 112027 + -

Escherichia coli 0157:H7 + (8) * + (60)

Escherichia coli 0157: H " - + (8)

Escherichia coli M-17 -

Escherichia coli of other serogroups:

0104:1-112 + -

01, 04, 079, 0111 , 0115, 0138, 0139, 0141 , 147 - - 06, 026, 0126 + -

+ (2)

025 (4)

" (2)

+ (3)

078 (7)

- (4)

Escherichia coli K12 C600 (DSM 3925) + +

Shigella sonnei +

Shigella flexneri (17) + (13)

- (4)

Shigella dysenteriae

Notes: * - in brackets - number of strains used in the test, «+» lysis positive; «-» lysis negative i.e. no lysis observed.

Example 3 - Stability testing of a liquid antibacterial composition.

An antibacterial composition was obtained which included the following: a Escherichia coli phage lysate filtrate containing Escherichia coli bacteriophage BPhEd ; a Escherichia coli phage lysate filtrate containing Escherichia coli bacteriophage BPhEc2; a Staphylococcus phage lysate filtrate containing a Staphylococcus bacteriophage that is a virulent

bacteriophage; a Salmonella enteritidis phage lysate filtrate containing a Salmonella bacteriophage that is a virulent bacteriophage lytically active against Salmonella enteritidis; a Salmonella infantis phage lysate filtrate containing a Salmonella bacteriophage that is a virulent bacteriophage lytically active against Salmonella infantis; a Salmonella typhimurium phage lysate filtrate containing a Salmonella bacteriophage that is a virulent bacteriophage lytically active against Salmonella typhimurium; a Listeria monocytogenes phage lysate filtrate containing a Listeria bacteriophage that is a virulent bacteriophage. The mixed phage lysate filtrates were diluted with phosphate buffered saline (PBS) maintaining the lytic activity of each phage in the composition to a level at least 10 6 pfu per mL of the composition against test strains, as well as human bacterial isolates. The composition also included the additives (%wt of the composition) licorice root syrup (4.0%), apple pectin (0.01%) and glycine (0.01%). Samples of the composition were studied with regard to stability of the lytic activity of the Escherichia coli bacteriophage strains BPhEd and BPhEc2 for two years of storage, as well as lysogeny tests of all of the bacteriophages of the composition. Lytic activity of the polyvalent bacteriophage strain of Escherichia coli BPhEd against the susceptible

Escherichia coli strains serotypes O104:H4, 0157:H7, O104:H12, 06, 026, 0126, 025, 078 and K12 C600, susceptible strains of Shigella sonnei and Shigella flexneri was at least

10 6 pfu/ml. Lytic activity of the bacteriophage strain of Escherichia coli BPhEc2 against the susceptible Escherichia coli strains serotypes 0157:H7, 0157:H " and K12 C600 was at least 10 6 pfu/mL. Lytic activity of other bacteriophage strains of the composition was also at least

10 6 pfu/ml. Lysogeny tests were all negative. In order to study the bioavailability of the obtained composition, a 0.6 g sample was introduced to medium 199. A consistent dispersion of the preparation in water medium and preservation of at least 99 % of lytic activity of the composition were observed.

Example 4 - Stability testing of a freeze-dried antibacterial composition.

An anti-bacterial liquid composition was prepared which contained the same mixture of bacteriophage strains as included in the composition of Example 3, but with additives suitable for producing a freeze dried composition. The composition was arranged to have a lytic activity of each phage of at least 10 11 pfu per mL of the composition against test strains as well as human bacterial isolates. The composition also included the additives (%wt of the

composition) saccharose (10.0%) and gelatin (1.5%). The antibacterial composition was freeze-dried. Samples of the composition were studied with regard to stability of polyvalent activity of the bacteriophage strain of Escherichia coli BPhEd for five years of storage, as well as lysogeny tests of all of the bacteriophages of the composition. After storage, the samples were made up with water to the same volume as in the original composition. The lytic activity of the polyvalent bacteriophage strain of Escherichia coli BPhEd against the susceptible

Escherichia coli strains serotypes O104:H4, 0157:H7, O104:H12, 06, 026, 0126, 025, 078 and K12 C600, susceptible strains of Shigella sonnei and Shigella flexneri was at least 10 11 pfu/ml. Lytic activity of the bacteriophage strain of Escherichia coli BPhEc2 against the susceptible Escherichia coli strains serotypes 0157:H7, 0157:1-1 " and K12 C600 was at least 10 11 pfu/mL Lytic activity of each of the other bacteriophage strains of the composition was also at least 10 11 pfu/ml. Lysogeny tests were all negative. Example 5 - Stability testing of a liquid antibacterial composition.

An anti-bacterial composition was prepared which contained the same mixture of bacteriophage strains as included in the composition of Example 3. The antibacterial composition was obtained with a lytic activity of each phage of at least 10 6 pfu per mL of the composition against test strains as well as human bacterial isolates. The composition also included the additives (%wt of the composition) licorice root syrup (4.0%), apple pectin (0.01%), glycine (0.01%), distilled water (95.88% wt). Samples of the composition were studied with regard to stability of lytic activity of the bacteriophage strains of Escherichia coli BPhEd and BPhEc2 for one year of storage, as well as lysogeny tests of all of the bacteriophages of the composition. Lytic activity of the polyvalent bacteriophage strain of Escherichia coli BPhEd against the susceptible Escherichia coli strains serotypes 0104: H4, 0157:1-17, 0104:1-112, 06, 026, 0126, 025, 078 and K12 C600, susceptible strains of Shigella sonnei and Shigella flexneri was at least 10 6 pfu/ml. Lytic activity of the bacteriophage strain of Escherichia coli BPhEc2 against the susceptible Escherichia coli strains serotypes

0157:H7, 0157:H " and K12 C600 was at least 10 6 pfu/mL. Lytic activity of other bacteriophage strains of the composition was also at least 10 6 pfu/ml. Lysogeny tests were all negative. In order to study the bioavailability of the obtained composition a 0.6 g sample was introduced to medium 199. A consistent dispersion of the preparation in water medium and preservation of at least 99 % of lytic activity of the composition were observed. Example 6 - Stability testing of an antibacterial composition in the form of suppository.

An anti-bacterial composition was prepared which contained the same mixture of bacteriophage strains as included in the composition of Example 3, but with additives suitable for producing a suppository. The antibacterial composition was obtained with a lytic activity of each phage of at least 10 6 pfu per suppository of the composition against test strains as well as human bacterial isolates. The composition included 0.132ml of the phage lysate filtrates diluted with buffer per suppository. The composition also included the additives per suppository: 0.0236g of glucose, 1.043 g of solid fat "SolPro", 0.088 g of emulsifier T-2, 0.088 g of paraffin P-2, 0.125 ml of purified water. Samples of the composition were studied with regard to stability of lytic activities of the bacteriophage strains of Escherichia coli BPhEd and BPhEc2 for five years of storage, as well as lysogeny tests of all of the bacteriophages of the composition. Lytic activity of the polyvalent bacteriophage strain of Escherichia coli BPhEd against the susceptible Escherichia coli strains serotypes O104:H4, 0157:1-17, 0104:1-112, 06, 026, 0126, 025, 078 and K12 C600, susceptible strains of Shigella sonnei and Shigella flexneri was at least 10 6 pfu per suppository. Lytic activity of the bacteriophage strain of

Escherichia coli BPhEc2 against the susceptible Escherichia coli strains serotypes 0157:H7, 0157: H " and K12 C600 was at least 10 6 pfu per suppository. Lytic activity of each of the other bacteriophage strains of the composition was also at least 10 6 pfu per suppository. Lysogeny tests were all negative.

Example 7 - Stability testing of an antibacterial composition in the form of capsule.

A freeze dried anti-bacterial composition was prepared according to the method of Example 4 and then formed into a capsule. The freeze dried mixture was provided a lytic activity of each phage of at least 10 6 pfu per capsule of the composition against test strains as well as human bacterial isolates. The composition included 0.176g of the freeze-dried bacteriophages per capsule. The composition also included the additives per capsule: 0.0236g of glucose, 0.295 g of lactose, 0.005 g of fumed silica (Aerosil A 300). Samples of the composition were studied with regard to the stability of the lytic activity of the bacteriophage strains of Escherichia coli BPhEd and BPhEc2 for five years of storage, as well as lysogeny tests of all of the bacteriophages of the composition. Lytic activity of the polyvalent

bacteriophage strain of Escherichia coli BPhEd against the susceptible Escherichia coli strains serotypes O104:H4, 0157:1-17, O104:H12, 06, 026, 0126, 025, 078 and K12 C600, susceptible strains of Shigella sonnei and Shigella flexneri was at least 10 6 pfu per 1 capsule. Lytic activity of the bacteriophage strain of Escherichia coli BPhEc2 against the susceptible Escherichia coli strains serotypes 0157:1-17, 0157:1-1 " and K12 C600 was at least 10 6 pfu per 1 capsule. Lytic activity of each of the other bacteriophage strains of the composition was also at least 10 6 pfu per 1 capsule. Lysogeny tests were all negative.

Example 8. Assessment of the effect of the bacteriophages of the antibacterial composition on industrial strains of lactobacilli and bifidobacteria.

Four tubes with 9 ml of bifid medium each (Rospotrebnadzor's State Science Center of

Applied Microbiology and Biotechnology) were treated with 1 ml doses of 24-hour culture (also grown in a bifid medium at 38°C) of industrial strains of lactobacilli or bifidobacteria

(Lactobacillus acidophilus NK1, Lactobacillus acidophilus 100ash, Lactobacillus acidophilus K3III24, Lactobacillus plantarum 8P-A3, Bifidobacterium adolescentis MC-42, Bifidobacterium bifidum 1 , Bifidobacterium bifidum 791 , Bifidobacterium bifidum LVA-3, Bifidobacterium longum Ya-3, Bifidobacterium breve 79-119, Bifidobacterium infantis 73-15) in a concentration of 10 3 CFU/ml. One of the tubes was used as a control tube (with only an industrial strain introduced into the culture). Two other test tubes were treated with 1 ml doses of the antibacterial composition as described in Example 3. The fourth tube for comparison was treated with a 1 ml dose of Intesti-bacteriophage (Scientific Development and Production Center "Microgen" of Ministry of Health Care and Social Development of Russia). The contents of the tubes were mixed by pipetting, and incubated for 17 hours at 38°C. Evaluation of growth of the industrial strains was carried out by visual comparison of the optical densities of the contents of the tubes. Uncertain cases were tested by titering. Optical densities of each row of four tubes were identical. All of the strains of lactobacilli and bifidobacteria demonstrated homogeneous growth in each row of four tubes. It was thus clear that the antibacterial composition does not lyse these industrially-used bacterial strains. Example 9. Assessment of the effect of the bacteriophages of the antibacterial composition on normal intestinal microflora isolated from patients.

Stool samples from 50 patients were suspended in saline in a proportion of 1 g of faeces per 9 ml of saline. Then, from the original dilution of the suspension, a number of subsequent dilutions were made in saline. In order to assess the effect of bacteriophages of the antibacterial composition as described in Example 3 on bifidobacteria, 1 ml from each tube of the obtained number of dilutions was introduced to the test tubes, each containing 9 ml of bifid medium (Rospotrebnadzor's State Science Center of Applied Microbiology and

Biotechnology) and 1 ml of the tested antibacterial composition. The antibacterial composition was not introduced to the control tubes. To the comparison tube, instead of the antibacterial composition, 1 ml of Intesti-bacteriophage (Scientific Development and Production Center "Microgen" of Ministry of Health Care and Social Development of Russia) was introduced. All of the samples were cultivated for 48 hours at 37°C, whereafter growth rates and morphology of bifidobacteria were examined. No inhibition of growth of bifidobacteria occurred in any of the tubes.

In order to assess the effect of bacteriophages of the antibacterial composition as described in Example 3 on lactobacilli, 1 ml from each tube of the obtained number of dilutions was introduced to the test tubes, each containing 4.5 ml of medium MRS-4 (OJSC "Biomed"), and 0.5 ml of the tested antibacterial composition. The antibacterial composition was not introduced to the control tubes. To the comparison tube, instead of the antibacterial composition, 1 ml of Intesti-bacteriophage was introduced (Scientific Development and Production Center "Microgen" of Ministry of Health Care and Social Development of Russia). All of the samples were cultivated for 48 hours at 37°C, after which growth rates and morphology of lactobacilli were examined. No inhibition of growth of lactobacilli occurred in any of the tubes.

In order to assess the effect of bacteriophages of the antibacterial composition as described in Example 3 on isolates of normal E. coli, Endo agar was used (Scientific

Development and Production Center "Growth Media", Makhachkala). After 24 hours of incubation in a thermostat at 37°C, typical E. coli colonies were selected and identified. From the typical colonies a microbial suspension was obtained with a density of 10 NTU

(Nephelometric Turbidity Unit) - 0.93x10 9 cells per ml. A drop of the suspension was introduced to a Petri dish with blood agar-based solid growth medium and spread with a spreader until complete and consistent drying on the entire surface of the dish. The dish was then divided into three sections. After 30 minutes the first section of the inoculated surface was treated with one drop of antibacterial composition, the second section was treated with intesti- bacteriophage, and the third section remained intact. Then the platings were thermostatted for 24 hours at 37°C. The results of the study were evaluated visually, by the presence or absence of clear regions of lysis in the sections. There was not a single case where the antibacterial composition lysed a normal E. coli. In 30 % of the cases (15 samples of normal E. coli strains isolated from the patients) Intesti-bacteriophage lysed the normal E. coli.

Example 10. Assessment of effect of a liquid antibacterial composition - enterocolitis.

A microbiological test of a stool sample from a patient with enterocolitis showed presence of Escherichia coli serotype O104:H4. The patient was subsequently treated orally in 40 ml doses 3 times a day for 7 consecutive days with an antibacterial composition containing the phage strains described in Example 3 in phosphate buffered saline (with a concentration of each phage of at least 10 6 pfu per ml of the composition against test strains, as well as human bacterial isolates), and additives (licorice root syrup, apple pectin and glycine) in a total amount of 1.0 % wt of the composition. After the therapy using the antibacterial composition, clinical symptoms of enterocolitis were resolved and no indication of presence of E. coli serotype O104:H4 was found using microbiological methods.

Example 11. Assessment of effect - salmonellosis.

Microbiological testing of a stool sample of a patient with salmonellosis showed presence of Salmonella typhi murium. The patient was subsequently treated orally with 30 ml doses 3 times a day for 7 consecutive days of an antibacterial composition containing the phage strains described in Example 3 (with a concentration of each phage of at least 10 6 pfu per ml of the composition against test strains, as well as human bacterial isolates), and additives in the amount of 45.0 % wt of the composition. After the therapy using the antibacterial composition, clinical symptoms of salmonellosis were resolved and no indication of presence of Salmonella typhimurium was found using microbiological methods.

Example 12. Assessment of effect - enterocolitis.

Microbiological testing of stool sample of a patient with enterocolitis showed presence of Escherichia coli serotype 0157:1-17. The patient was subsequently treated orally with 40 ml doses 3 times a day for 14 consecutive days of an antibacterial composition containing the phage strains described in Example 3 (with a concentration of each phage of at least 10 6 pfu per ml of the composition against test strains, as well as human bacterial isolates), and additives in an amount of 95.0 % wt of composition. After the therapy using the antibacterial composition, clinical symptoms of enterocolitis were resolved and no indication of presence of E. coli serotype 0157:H7 was found using microbiological methods.

Example 13. Assessment of prophylactic effect - nosocomial infection caused by Salmonella typhimurium.

Cases of nosocomial infection caused by Salmonella typhimurium were discovered in a hospital. Every other newly arrived patient was treated orally 3 times a day for 6 consecutive days with a 40 ml dose of an antibacterial composition containing the phage strains described in Example 3 (with a concentration of each phage of at least 10 6 pfu per ml of the composition against test strains, as well as human bacterial isolates) and additives in an amount of 1.0 % wt of composition. Those patients treated with the composition demonstrated no signs of nosocomial infection caused by Salmonella typhimurium. Within the group of patients not treated with the antibacterial composition, cases of nosocomial infection caused by Salmonella typhimurium were found.

Example 14. Assessment of prophylactic effect - infection by Salmonella enteritidis Cases of an infection caused by Salmonella enteritidis were confirmed within a population. A group of 100 people were treated orally 3 times a day for 6 consecutive days with 40 ml doses of antibacterial composition containing the phage strains described in Example 3 (with a concentration of each phage of at least 10 6 pfu per ml of the composition against test strains, as well as human bacterial isolates) and additives in an amount of 55.0 % wt of the composition. Among the group of people treated with the antibacterial composition no signs of infection caused by Salmonella enteritidis were demonstrated. Amongst a group of people not treated with the composition there were cases of infection.

Example 15. Assessment of prophylactic effect - food infection by Staphyloccus aureus An infection caused by Staphyloccus aureus was discovered amongst the clients of a catering facility. A group of the clients of the facility were treated orally 3 times a day for 5 consecutive days with 40 ml doses of antibacterial composition containing the phage strains described in Example 3 (at a concentration of each phage of at least 10 6 pfu per ml of the composition against test strains, as well as human bacterial isolates), and additives in an amount of 95.0 % wt of the composition. Within the treatment group, there were no signs of toxic food infection. Among clients not treated with antibacterial composition, there were cases of toxic food infection, caused by Staphylococcus aureus.

The catering facility was shut for 5 days and during this period the catering staff were treated 3 times a day for 5 consecutive days with 40 ml doses of the antibacterial composition. After the treatment, cases of toxic food infection caused by Staphylococcus aureus subsided among the facility's clients.

Example 16. Using antibacterial composition as a processing aid

At a meat processing facility there were cases of contamination of beef with pathogenic

Escherichia coli serotype 0157:H7. In order to prevent further cases of contamination beef samples were pulverized with an antibacterial composition before vacuum sealing, the composition including the phage strains described in Example 3 (at a concentration of each phage of at least 10 6 pfu per mL of the composition against test strains, as well as human bacterial isolates), and additives in an amount of 95.0 % wt of the composition. Within the expiration period in sealed package, stated by the manufacturer, Escherichia coli serotype 0157:H7 was not found.

Example 17 - Using antibacterial composition as a disinfectant

Cases of nosocomial infection caused by Staphylococcus aureus were found in a clinical setting. To prevent further development of nosocomial infection caused by

Staphylococcus aureus, all of the surfaces of the facility and medical equipment were treated for 1 week with an antibacterial composition, which included the phage strains described in Example 3 (at a concentration of each phage of at least 10 6 pfu per ml of the composition against test strains, as well as human bacterial isolates), and additives in an amount 45.0 % wt of the composition. After the disinfection, cases of nosocomial infection declined. Example 18. Assessment of the effect of an antibacterial composition in the form of a capsule - enterocolitis.

A microbiological test of a stool sample from a patient with enterocolitis showed presence of Escherichia coli serotype 0104:H4. The patient was subsequently treated orally with one capsule containing an antibacterial composition, as described in Example 7, twice a day for 14 consecutive days. After the therapy using the antibacterial composition, clinical symptoms of enterocolitis were resolved and no indication of presence of E. coli serotype O104:H4 was found using microbiological methods.

Example 19. Assessment of effect of antibacterial composition in the form of a suppository - enterocolitis.

Microbiological testing of stool sample of a patient with enterocolitis showed presence of Escherichia coli serotype 0157:H7. The patient was subsequently treated rectally 2 times a day for 14 consecutive days with one suppository of an antibacterial composition as described in Example 6. After the therapy using the antibacterial composition, clinical symptoms of enterocolitis were resolved and no indication of presence of E. coli serotype 0157:1-17 was found using microbiological methods. Example 20 - Methods of obtaining bacteriophage active against disease-causing bacteria - salmonella

For obtaining a bacteriophage active against Salmonella entehca serovar

Typhimurium, bacterial culture of the host strain - Salmonella entehca serovar Typhimurium - with a titer of 10 8 CFU/ml was inoculated in a cultivation vessel on a slant solid growth medium 10 - 25 mm in thickness. The host strain was cultivated for 3.5 hours at an optimal temperature (+37°C), then the resulting bacterial lawn of Salmonella entehca serovar Typhimuhum was inoculated with a stock bacteriophage with a titer of 10 5 pfu/ml, the vessel was then hermetically sealed (glass mattress flask) and the bacteriophage was cultivated for 13 hours at an optimal temperature (+37°C) for growing a bacteriophage strain culture with a layer of air 25 - 40 mm in thickness over the surface of the solid growth medium. Phage lysate was obtained by suspending the bacteriophage from the surface of the solid growth medium with saline in a proportion of 0.04 ml per 1 cm 2 of the surface of the solid growth medium.

Then, the phage lysate was pumped into a sterile vessel and passed through a filter with a pore diameter of 0.45 pm; then the resulting filtrate was sterilized by filtration through a filter with a pore diameter of 0.2 pm; then the resulting filtrate was passed through a column containing an agent with affinity to endotoxins. The obtained refined phage lysate in the form of an eluate contained bacteriophages with a titer of 10 13 pfu/ml, free from bacteria or ingredients of the growth medium that had been used and with a concentration of endotoxin less than 50 units of endotoxin per 1 ml of refined phage lysate (EU/ml).

Example 21 - Methods of obtaining cocktail of bacteriophages

For obtaining a bacteriophage active against Escherichia coli 0104:1-14, bacterial culture of the non-pathogenic host strain - Escherichia coli K12 C600 - with a titer of 10 9 CFU /ml was inoculated in a cultivation vessel on a slant solid growth medium 10 - 25 mm in thickness. The host strain was cultivated for 3.2 hours at an optimal temperature (+37°C), then to the resulting bacterial lawn of Escherichia coli K12 C600 a stock bacteriophage was inoculated with a titer of 10 6 pfu/ml, the vessel (glass mattress flask) was then hermetically sealed and the bacteriophage was cultivated for 14 hours at an optimal temperature (+37°C) for growing a bacteriophage strain culture, with a layer of air 25 - 40 mm in thickness over the surface of the solid growth medium. Phage lysate was obtained by suspending the

bacteriophage from the surface of the solid growth medium with buffer at pH 7.0 in a proportion of 0.042 ml per 1 cm 2 of the surface of the solid growth medium. The phage lysate was then pumped into a sterile vessel and mixed with chloroform and matured for 40 minutes with continuous shuttling, then centrifuged for 40 minutes at 5500 rpm.

For obtaining a bacteriophage active against Listeria monocytogenes, a bacterial culture of a non-pathogenic host strain - Listeria innocua - with a titer of 10 9 CFU/ml was inoculated in a cultivation vessel on a slant solid growth medium 10 - 25 mm in thickness. The host strain was cultivated for 3 hours at an optimal temperature (+37°C), then the resulting bacterial lawn of Listeria innocua was inoculated with a stock bacteriophage at a titer of

10 5 pfu/ml, the cultivation vessel (glass mattress flask) was then hermetically sealed and the bacteriophage was cultivated for 15 hours at an optimal temperature (+22°C) for growing a bacteriophage strain culture, with a layer of air 25 - 40 mm in thickness over the surface of the solid growth medium. Phage lysate was obtained by suspending the bacteriophage from the surface of the solid growth medium with buffer at pH 7.2 in a proportion of 0.045 ml per 1 cm 2 of the surface of the solid growth medium. The phage lysate was then pumped into a sterile vessel and mixed with chloroform and matured for 45 minutes with continuous shuttling, then centrifuged for 45 minutes at 5000 rpm.

Supernatants of the two resulting phage lysates were then mixed. The supernatant mix was then sterilized by filtration through a filter with a pore diameter of 0.22 pm; then passed through a column containing an agent with affinity to endotoxins. The obtained refined phage lysate mix (cocktail) in the form of an eluate contained an coliphage with a titer of 10 12 pfu/ml, and a Listeria bacteriophage with a titer of 10 11 pfu/ml, free from bacteria or ingredients of the used growth medium and with a concentration of endotoxin less than 50 (EU/ml).

Example 22 - Mixed phage composition

To obtain a bacteriophage active against Salmonella enterica serovar Typhimurium, a bacterial culture of the host strain - Salmonella enterica serovar Typhimurium - with a titer of 10 8 CFU/ml was inoculated in a cultivation vessel on a slant solid growth medium 10 - 25 mm in thickness. The host strain was cultivated for 3.5 hours at an optimal temperature (+37°C), then to the resulting bacterial lawn of Salmonella enterica serovar Typhimurium a stock bacteriophage was inoculated with a titer of 10 5 pfu/ml, the vessel (glass mattress flask) was then hermetically sealed and the bacteriophage was cultivated for 13 hours at an optimal temperature (+37 °C) for growing a bacteriophage strain culture with a layer of air 25 - 40 mm in thickness over the surface of the solid growth medium. Phage lysate was obtained by suspending the bacteriophage from the surface of the solid growth medium with saline with pH 7.1 in a proportion of 0.042 ml per 1 cm 2 of the surface of the solid growth medium. The phage lysate was then pumped into a sterile vessel and mixed with chloroform and matured for 32 minutes with continuous shuttling, then centrifuged for 32 minutes at 6000 rpm.

To obtain a bacteriophage active against Listeria monocytogenes, a bacterial culture of non-pathogenic host strain - Listeria innocua - with a titer of 10 9 CFU /ml was inoculated in a cultivation vessel on a slant solid growth medium 10 - 25 mm in thickness. The host strain was cultivated for 3 hours at an optimal temperature (+37°C), then to the resulting bacterial lawn of Listeria innocua a stock bacteriophage was inoculated with a titer of 10 5 pfu/ml, the cultivation vessel (glass mattress flask) was then hermetically sealed and the bacteriophage was cultivated for 15 hours at an optimal temperature (+24°C) for growing a bacteriophage strain culture, with a layer of air 25 - 40 mm in thickness over the surface of the solid growth medium. Phage lysate was obtained by suspending the bacteriophage from the surface of the solid growth medium with saline at pH 7.2 in a proportion of 0.045 ml per 1 cm 2 of the surface of the solid growth medium. The phage lysate was then pumped into a sterile vessel and mixed with chloroform and matured for 45 minutes with continuous shuttling, then centrifuged for 45 minutes at 5000 rpm. Supernatants of the two resulting phage lysates were then mixed. The supernatant mix was then sterilized by filtration through a filter with a pore diameter of 0.22 pm; then passed through a column containing an agent with affinity to endotoxins. The obtained refined phage lysate mix (cocktail) in the form of an eluate contained a salmonellosis bacteriophage with a titer of 10 12 pfu/ml, and a listeria bacteriophage with a titer of 10 11 pfu/ml, free from bacteria or ingredients of the used growth medium and with a concentration of endotoxin less than 50 (EU/ml).