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Title:
INHIBITORS OF H?+¿K?+¿-ATPase
Document Type and Number:
WIPO Patent Application WO/1999/063940
Kind Code:
A2
Abstract:
Disclosed are multibinding compounds which inhibit H?+¿/K?+¿-ATPase, an enzyme which is involved in the control of acid secretion in the stomach. The multibinding compounds of this invention containing from 2 to 10 ligands covalently attached to one or more linkers. Each ligand is an inhibitor of H?+¿/K?+¿-ATPase. The multibinding compounds of this invention are useful in the treatment gastroesophageal reflux disease ('GERD').

Inventors:
MEIER-DAVIS SUSAN (US)
GRIFFIN JOHN H (US)
CHOI SEOK-KI (US)
Application Number:
PCT/US1999/012925
Publication Date:
December 16, 1999
Filing Date:
June 08, 1999
Export Citation:
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Assignee:
ADVANCED MEDICINE INC (US)
MEIER DAVIS SUSAN (US)
GRIFFIN JOHN H (US)
CHOI SEOK KI (US)
International Classes:
C07D499/44; A01N57/34; A61K31/00; A61K31/357; A61K31/397; A61K31/407; A61K31/421; A61K31/424; A61K31/431; A61K31/439; A61K31/444; A61K31/4545; A61K31/496; A61K31/522; A61K31/536; A61K31/5377; A61K31/546; A61K31/551; A61K31/65; A61K31/7028; A61K31/7034; A61K31/7036; A61K31/7042; A61K31/7048; A61K31/7052; A61K31/7056; A61K31/7064; A61K31/7068; A61K31/7072; A61K38/00; A61K39/00; A61K39/395; A61K39/44; A61K47/48; A61K51/00; A61P31/04; A61P31/18; A61P43/00; C07C233/36; C07C233/78; C07C237/24; C07C237/26; C07C271/20; C07C275/42; C07C321/04; C07C323/12; C07C335/08; C07C335/32; C07D207/333; C07D211/58; C07D215/56; C07D233/90; C07D235/30; C07D263/28; C07D265/18; C07D401/06; C07D401/12; C07D401/14; C07D405/04; C07D413/14; C07D453/02; C07D471/04; C07D471/14; C07D473/00; C07D473/34; C07D475/04; C07D475/08; C07D477/00; C07D487/04; C07D487/06; C07D493/04; C07D493/06; C07D495/04; C07D498/04; C07D498/18; C07D501/20; C07D519/00; C07H15/236; C07H15/238; C07H15/26; C07H17/08; C07H19/06; C07H19/20; C07K2/00; C07K4/00; C12N9/99; C12P19/38; C12Q1/26; C12Q1/44; C12Q1/48; C12Q1/533; C40B30/04; C40B40/04; G01N33/15; G01N33/50; G01N33/53; G01N33/543; G01N33/566; G01N33/573; G01N33/68; G01N33/92; G01N37/00; C07B61/00; C07D207/32; (IPC1-7): A61K/
Domestic Patent References:
WO1992005802A11992-04-16
Other References:
PORTOGHESE P.S.: 'The role of concepts in structure-activity relationship studies of opioid ligands' J. MED. CHEM. vol. 35, no. 11, 29 May 1992, pages 1927 - 1937
Attorney, Agent or Firm:
Swiss, Gerald F. (Doane Swecker & Mathi, L.L.P. P.O. Box 1404 Alexandria VA, US)
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Claims:
WHAT IS CLAIMED IS:
1. A multibinding compound comprising from 2 to 10 ligands covalently attached to one or more linkers wherein each of said ligands independently comprises an inhibitor of H+/K+ATPase; and pharmaceutically acceptable salts thereof.
2. A multibinding compound of formula I: (L) p (X), I wherein each L is independently a ligand comprising an inhibitor of H+/K+ATPase; each X is independently a linker; p is an integer of from 2 to 10; and q is an integer of from 1 to 20; and pharmaceuticallyacceptable salts thereof.
3. The multibinding compound of Claim 2 wherein q is less than p.
4. The multibinding compound of Claim 3 wherein each ligand is independently selected from the group consisting of omeprazole, (S)omeprazole, pantoprazole, (S)pantoprazole, lansoprazole, (S)lansoprazole, rabeprazole, leminoprazole, IY81149, RO185364, AD8240, Sch 28080, H33525, SK&F 97574, SK&F96067 and YH1885.
5. The multibinding compound of Claim 3 wherein the ligand is omeprazole.
6. The multibinding compound of Claim 3 wherein the ligand is SK&F97574.
7. The multibinding compound of Claim 3 wherein the ligand is Sch 28080.
8. A multibinding compound of formula II: L'X'L'II wherein each L'is independently a ligand comprising an inhibitor of H+/K+ATPase and X'is a linker; and pharmaceuticallyacceptable salts thereof.
9. The multibinding compound of Claim 8 wherein each ligand is independently selected from the group consisting of omeprazole, (S)omeprazole, pantoprazole, (S)pantoprazole, lansoprazole, (S)lansoprazole, rabeprazole, leminoprazole, IY81149, RO185364, AD8240, Sch 28080, H33525, SK&F 97574, SK&F96067 and YH1885.
10. The multibinding compound of Claim 9 wherein the ligand is omeprazole.
11. The multibinding compound of Claim 9 wherein the ligand is SK&F97574.
12. The multibinding compound of Claim 9 wherein the ligand is Sch 28080.
13. The multibinding compound of Claim 8 wherein X'has the formula: XaZ(YaZ)mYbZXa wherein m is an integer of from 0 to 20; Xa at each separate occurrence is selected from the group consisting of O,S,NR,C (O),C (O) O,C (O) NR,C (S),C (S) O,C (S) NR or a covalent bond where R is as defined below; Z is at each separate occurrence is selected from the group consisting of alkylene, substituted alkylene, cycloalkylene, substituted cylcoalkylene, alkenylene, substituted alkenylene, alkynylene, substituted alkynylene, cycloalkenylene, substituted cycloalkenylene, arylene, heteroarylene, heterocyclene, or a covalent bond; ya and yb at each separate occurrence are selected from the group consisting ofC (O) NR',NR'C (O),NR'C (O) NR',C (=NR')NR', NR'C (=NR'),NR'C (O)O,N=C (Xa)NR',P (O) (OR')O, S (O) CR'R",S (O) nNR',SSand a covalent bond; where n is 0,1 or 2; and R, R'and R"at each separate occurrence are selected from the group consisting of hydrogen, alkyl, substituted alkyl, cycloalkyl, substituted cycloalkyl, alkenyl, substituted alkenyl, cycloalkenyl, substituted cycloalkenyl, alkynyl, substituted alkynyl, aryl, heteroaryl and heterocyclic.
14. A pharmaceutical composition comprising a pharmaceutically acceptable carrier and an effective amount of a multibinding compound comprising from 2 to 10 ligands covalently attached to one or more linkers wherein each of said ligands independently comprises an inhibitor of H+/K+ ATPase; and pharmaceuticallyacceptable salts thereof.
15. A pharmaceutical compositions comprising a pharmaceutically acceptable carrier and an effective amount of a multibinding compound of formula I: (L) p (X) y I wherein each L is independently a ligand comprising an inhibitor of H+/K+ATPase; each X is independently a linker; p is an integer of from 2 to 10; and q is an integer of from 1 to 20; and pharmaceuticallyacceptable salts thereof.
16. The pharmaceutical composition of Claim 15 wherein q is less than p.
17. A method for identifying multimeric ligand compounds possessing multibinding properties to H+/K+ATPase which method comprises: (a) identifying a ligand or a mixture of ligands wherein each ligand contains at least one reactive functionality; (b) identifying a library of linkers wherein each linker in said library comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand; (c) preparing a multimeric ligand compound library by combining at least two stoichiometric equivalents of the ligand or mixture of ligands identified in (a) with the library of linkers identified in (b) under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands; and (d) assaying the multimeric ligand compounds produced in the library prepared in (c) above to identify multimeric ligand compounds possessing multibinding properties.
18. A method for identifying multimeric ligand compounds possessing multibinding properties to H+/K+ATPase which method comprises: (a) identifying a library of ligands wherein each ligand contains at least one reactive functionality; (b) identifying a linker or mixture of linkers wherein each linker comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand; (c) preparing a multimeric ligand compound library by combining at least two stoichiometric equivalents of the library of ligands identified in (a) with the linker or mixture of linkers identified in (b) under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands; and (d) assaying the multimeric ligand compounds produced in the library prepared in (c) above to identify multimeric ligand compounds possessing multibinding properties.
19. The method according to Claim 17 or 18 wherein the preparation of the multimeric ligand compound library is achieved by either the sequential or concurrent combination of the two or more stoichiometric equivalents of the ligands identified in (a) with the linkers identified in (b).
20. The method according to Claim 19 wherein the multimeric ligand compounds comprising the multimeric ligand compound library are dimeric.
21. The method according to Claim 20 wherein the dimeric ligand compounds comprising the dimeric ligand compound library are heterodimeric.
22. The method according to Claim 21 wherein the heterodimeric ligand compound library is prepared by sequential addition of a first and second ligand.
23. The method according to Claim 17 or 18 wherein, prior to procedure (d), each member of the multimeric ligand compound library is isolated from the library.
24. The method according to Claim 23 wherein each member of the library is isolated by preparative liquid chromatography mass spectrometry (LCMS).
25. The method according to Claim 17 or Claim 18 wherein the linker or linkers employed are selected from the group comprising flexible linkers, rigid linkers, hydrophobic linkers, hydrophilic linkers, linkers of different geometry, acidic linkers, basic linkers, linkers of different polarization and/or polarizability and amphiphilic linkers.
26. The method according to Claim 25 wherein the linkers comprise linkers of different chain length and/or having different complementary reactive groups.
27. The method according to Claim 26 wherein the linkers are selected to have different linker lengths ranging from about 2 to 100A.
28. The method according to Claim 17 or 18 wherein the ligand or mixture of ligands is selected to have reactive functionality at different sites on said ligands.
29. The method according to Claim 28wherein said reactive functionality is selected from the group consisting of carboxylic acids, carboxylic acid halides, carboxyl esters, amines, halides, pseudohalides, isocyanates, vinyl unsaturation, ketones, aldehydes, thiols, alcohols, anhydrides, boronates, and precursors thereof wherein the reactive functionality on the ligand is selected to be complementary to at least one of the reactive groups on the linker so that a covalent linkage can be formed between the linker and the ligand.
30. The method according to Claim 17 or Claim 18 wherein the multimeric ligand compound library comprises homomeric ligand compounds.
31. The method according to Claim 17 or Claim 18 wherein the multimeric ligand compound library comprises heteromeric ligand compounds.
32. A library of multimeric ligand compounds which may possess multivalent properties to H+/K+ATPase which library is prepared by the method comprising: (a) identifying a ligand or a mixture of ligands wherein each ligand contains at least one reactive functionality; (b) identifying a library of linkers wherein each linker in said library comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand; and (c) preparing a multimeric ligand compound library by combining at least two stoichiometric equivalents of the ligand or mixture of ligands identified in (a) with the library of linkers identified in (b) under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands.
33. A library of multimeric ligand compounds which may possess multivalent properties to H+/K+ATPase which library is prepared by the method comprising: (a) identifying a library of ligands wherein each ligand contains at least one reactive functionality; (b) identifying a linker or mixture of linkers wherein each linker comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand; and (c) preparing a multimeric ligand compound library by combining at least two stoichiometric equivalents of the library of ligands identified in (a) with the linker or mixture of linkers identified in (b) under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands.
34. The library according to Claim 32 or Claim 33 wherein the linker or linkers employed are selected from the group comprising flexible linkers, rigid linkers, hydrophobic linkers, hydrophilic linkers, linkers of different geometry, acidic linkers, basic linkers, linkers of different polarization and/or polarizability and amphiphilic linkers.
35. The library according to Claim 34 wherein the linkers comprise linkers of different chain length and/or having different complementary reactive groups.
36. The library according to Claim 35 wherein the linkers are selected to have different linker lengths ranging from about 2 to 100A.
37. The library according to Claim 32 or 33 wherein the ligand or mixture of ligands is selected to have reactive functionality at different sites on said ligands.
38. The library according to Claim 37 wherein said reactive functionality is selected from the group consisting of carboxylic acids, carboxylic acid halides, carboxyl esters, amines, halides, pseudohalides, isocyanates, vinyl unsaturation, ketones, aldehydes, thiols, alcohols, anhydrides, boronates, and precursors thereof wherein the reactive functionality on the ligand is selected to be complementary to at least one of the reactive groups on the linker so that a covalent linkage can be formed between the linker and the ligand.
39. The library according to Claim 32 or Claim 33 wherein the multimeric ligand compound library comprises homomeric ligand compounds.
40. The library according to Claim 32 or Claim 33 wherein the multimeric ligand compound library comprises heteromeric ligand compounds.
41. An iterative method for identifying multimeric ligand compounds possessing multibinding properties to H+/KTATPase which method comprises: (a) preparing a first collection or iteration of multimeric compounds which is prepared by contacting at least two stoichiometric equivalents of the ligand or mixture of ligands which target H+/K+ATPase with a linker or mixture of linkers wherein said ligand or mixture of ligands comprises at least one reactive functionality and said linker or mixture of linkers comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand wherein said contacting is conducted under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands; (b) assaying said first collection or iteration of multimeric compounds to assess which if any of said multimeric compounds possess multibinding properties; (c) repeating the process of (a) and (b) above until at least one multimeric compound is found to possess multibinding properties; (d) evaluating what molecular constraints imparted or are consistent with imparting multibinding properties to the multimeric compound or compounds found in the first iteration recited in (a) (c) above; (e) creating a second collection or iteration of multimeric compounds which elaborates upon the particular molecular constraints imparting multibinding properties to the multimeric compound or compounds found in said first iteration; (f) evaluating what molecular constraints imparted or are consistent with imparting enhanced multibinding properties to the multimeric compound or compounds found in the second collection or iteration recited in (e) above; (g) optionally repeating steps (e) and (f) to further elaborate upon said molecular constraints.
42. The method according to Claim 41 wherein steps (e) and (f) are repeated from 250 times.
43. The method according to Claim 41 wherein steps (e) and (f) are repeated from 550 times.
44. A method for treating gastroesophageal reflux disease in a patient, the method comprising administering to a patient having gastroesophageal reflux disease a pharmaceutical composition comprising a pharmaceuticallyacceptable carrier and a therapeuticallyeffective amount of a multibinding compound comprising from 2 to 10 ligands covalently attached to one or more linkers wherein each of said ligands independently comprises an inhibitor of H+/K+ ATPase; and pharmaceuticallyacceptable salts thereof.
45. A method for treating peptic ulcer disease in a patient, the method comprising administering to a patient having peptic ulcer disease a pharmaceutical composition comprising a pharmaceuticallyacceptable carrier and a therapeuticallyeffective amount of a multibinding compound comprising from 2 to 10 ligands covalently attached to one or more linkers wherein each of said ligands independently comprises an inhibitor of H+/K+ATPase; and pharmaceuticallyacceptable salts thereof.
Description:
INTERNATIONAL SEARCH REPORT International application No. PCT/US99/12925 C (Continuation). DOCUMENTS CONSIDERED TO BE RELEVANT Category* Citation of document, with indication, where appropriate, of die relevant passages Relevant to claim No. Y SIH et al. Studies on (H+-K+)-ATPase Inhibitors of Gastric Acid 1-45 Secretion. Prodrugs of 2-[(2-Pyridinylmethyl) sulfìnyl]- benzimidazole Proton-Pump Inhibitors. J. Med. Chem. 1991, Vol. 34, No. 3, pages 1049-1062, see entire article, especially page 1050 and Tables. Y US 5,554,631 A (KIM et al) 10 September 1996 (10/09/96), see 1-45 entire document, especially columns 1-5 and claims 1-4. Y US 5,049,566 A (CHIESI et al) 17 September 1991 (17/09/91), see 1-45 entire document. Y MORII et al. Oligomeric Regulation of Gastric HF, K"-ATPase. J. 1-45 Biol. Chem. 23 February 1996, Vol. 271, No. 8, pages 4068-4072, see Abstract and Discussion (page 4072). Y US 5,677,302 A (KARIMIAN et al) 14 October 1997 (14/10/97), 1-45 see entire document. Y SHUKER et al. Discovering High-Affinity Ligands for Proteins: 17-43 SAR by NMR. Science. 29 November 1996, Vol. 274, pages 1531- 1534, see entire article, especially Figure 1. Y US 5,463,564 A (AGRAFIOTIS et al) 31 October 1995 (31/10/95), 17-43 see entire document, especially Abstract and claim 1. INTERNATIONAL SEARCH REPORT International application No. PCT/US99/12925 Box I Observations where certain claims were found unsearchable (Continuation of item 1 of first sheet) This international report has not been established in respect of certain claims under Article 17 (2) (a) for the following reasons: 1. n Claims : because they relate to subject matter not required to be searched by this Authority, namely : 2. t Claims Nos.: because they relate to parts of the international application that do not comply with the prescribed requirements to such an extent that no meaningful international search can be carried out, specifically : 3. F7 Claims Nos : because they are dependent claims and are not drafted in accorda lce with tbe second and third sentences of Rule 6.4 (a). Box II Observations where unity of invention is lacking (Continuation of item 2 of Srst sheet) This International Searching Authority found multiple inventions in this international application, as follows: Please See Extra Sheet. 1.2 As aLI requued additlonal search fees were timely paid by dhe applicant, this international search reportcovers all searchable claims. 2. As all searchable claims could be searched without effort justifying an additional fee, this Authority did not invite payment of any additional fee. 3. As only some of the required additional search fees were timely paid by the applicant, this international search report covers only those claims for which fees were paid, specifically claims Nos.: 4. No required additional search fees were timely paid by the applicant. Consequently, this international search report is restricted to the invention first mentioned in the claims ; it is covered by claims Nos.: Remark on Protest The additional search fees were accompanied by the applicant's protest. No protest accompanied the payment of additional search fees. INTERNATIONAL SEARCH REPORT International application No. PCT/US99/12925 l B. FIELDS SEARCHED Electronic data bases consulted (Name of data base and where practicable terms used): WEST, STN (CAPLUS, SCISEARCH, BIOSIS, MEDLINE) Search terms: omeprazole, pantoprazole, lansoprazole, rabeprazole. lemmoprazole, multivalent, divalent, multimeric, dimeric, combinatorial, library, covalent, fink ? (tinker, linked) BOX II. OBSERVATIONS WHERE UNITY OF INVENTION WAS LACKING This ISA found multiple inventions as follows: This application contains the following inventions or groups of inventions which are not so linked as to form a single inventive concept under PCT Rule 13.1. In order for all inventions to be searched, the appropriate additional search fees must be paid. Group I, claim (s) 1-16, 44 and 45, drawn to multibinding compounds, pharmaceutical compositions and methods of treatment. Group lI, claim (s) 17-43, drawn to a method for identifying multimeric ligand compounds, library of multimeric ligand compounds and an iterative method for identifying multimeric ligand compounds. This application contains claims directed to more than one species of the generic invention. These species are deemed to lack Unity of Invention because they are not so linked as to form a single inventive concept under PCT Rule 13.1. In order for more than one species to be searched, the appropriate additional search fees must be paid. The species are asfollows: In Group L, there are 13 species of ligand : Species A: omeprazole and S-omeprazole Species B: pantoprazole and S-pantoprazole Species C: lansoprasole and S-lansoprasole Species D: rabeprazole Species E : leminoprazole Species F: IY-81149 Species G: RO-18-5364 Species H: AD-8240 Species I : Sch 28080 Species J: H-33525 Species K: SK&F-97574 Species L : SK&F-96067 Species M: YH1885 The claims are deemed to correspond to the species listed above in the following maimer : Species A: Claims 1-5, S-10, 13-16, 44,45 Species B: Claims 1-4,8,9,13-16,44,45 Species C: Claims 1-4, 8,9,13-16,44,45 Species D: Claims 1-4,8,9,13-16,44,45 Species E: Claims 1-4,8,9,13-16,44,45 Species F: Claims 1-4,8,9,13-16,44,45 Species G: Claims 1-4,8,9,13-16,44,45 Species H: Claims 1-4,8,9,13-16,44,45 Species I : Claims 1-4, 7-9,12-16,44,45 Species J: Claims 1-4, 8,9,13-16,44,45 Species K: Claims 1-4,6,8,9,11,13-16,44,45 Species L: Claims 1-4, 8,9,13-16,44,45 Species M: Claims 1-4, 8, 9,13-16,44,45 The following claims are generic: 1-4, 8,9,13-16,44,45 INTERNATIONAL SEARCH REPORT International application No. PCT/US99/12925 The inventions listed as Groups I and II do not relate to a single inventive concept under PCT Rule 13.1 because, under PCT Rule 13. 2, they lack the same or corresponding special technical features for the following reasons: The two groups do not share the same special technical feature. The feature that links the claims in Group I is the multibinding compounds of a particular formula. The feature that links the claims in Group II is the library of multimeric ligand compounds possessing multibinding properties (no structural limitations). A library is a different inventive concept than a single compound and therefore the two groups lack unity. The species listed above do not relate to a single inventive concept under PCT Rule 13.1 because, under PCT Rule 13.2, the species lack the same or corresponding special technical features for die following reasons: PCT Rule 13.2 states that unity of invention shall be fulfilled when there is a technical relationship among those inventions involving one or more of the same or corresponding special technical features". It further defines"special technical feature"as"those technical features that define a contribution which each of the claimed inventions, claimed as a whole, makes over the prior art". For example, unity of invention is fulfilled if : (a) all alternatives have a common property; and (b) (i) a common structure is present, i. e. a significant structural element is shared by all alternatives, or (b) (ii) in cases where the common structure can not be the unifying criterion, all alternatives belong to a recognized class of compounds in the art to which the invention pertains. (MPEP Section 1850). In the instant case, part (a) above is fulfilled because all claimed species of ligand have a common property. However, the compounds encompassed by the instant formulas do not all possess a common structure (no shared significant structural element). Further, all of the species do not belong to a recognized class of compounds in the art to which they pertain. For the forgoing reasons, election under these rules is proper and required.