JP5113979 | Multiple Substitution Selective Androgen Receptor Modifiers and Their Usage |
WO/1998/045255 | CALCILYTIC COMPOUNDS |
WO/1996/036593 | PROCESS FOR PRODUCING AROMATIC NITRILES |
CHE JIANWEI (US)
HUANG HUANG (US)
KONG NIKKI (US)
FERRAO SILAS (US)
LIU YINGPENG (US)
CRUITE JUSTIN (US)
WO2021077010A1 | 2021-04-22 |
CA3163959A1 | 2021-07-15 |
What is claimed is: 1. A compound having a structure represented by formula I: (I), or a pharmaceutically acceptable salt or stereoisomer thereof, wherein: X1 is N, CH, CCl, CF, or CCN; each X2 is independently CH2, S, CHF, CHCl, CHOH, or CF2; R1 is hydrogen, =O, –CN, –C≡CH, –OH, –SH, –NH2, –COOH, halo, (C1-C6)alkyl, –O–(C1- C6)alkyl, (C1-C6)haloalkyl, amido, carboxy, carbamoyl, sulfamoyl, phenyl, 5- to 8-membered heterocyclyl, –NR7R8, –C(O)R9, –C(O)NR10R11, or L1Y1, wherein said alkyl, phenyl, or heterocyclyl is optionally substituted with one or more groups selected from halo, –COOH, –OH, –NH2, (C1-C6)alkyl, –C(O)O–(C1-C6)alkyl, –C(O)N(C1-C6 alkyl)2, –O–(C1-C6)alkyl, –N(C1-C3 alkyl)2, phenyl, and 4- to 6-membered heterocyclyl, optionally substituted with one or more groups selected from halo and (C1-C6)alkyl; R7 is hydrogen, (C1-C4)alkyl, or (C3-C6)cycloalkyl; R8 is hydrogen, (C1-C4)alkyl, (C1-C4)haloalkyl, (C3-C6)cycloalkyl, or 6-membered heterocyclyl; R9 is –(C1-C3)alkyl–N(C1-C3 alkyl)2, (C3-C6)cycloalkyl, or 5- to 6-membered heterocyclyl, wherein said heterocyclyl is optionally substituted with (C1-C3)alkyl; R10 is hydrogen, (C1-C3)alkyl, or (C3-C6)cycloalkyl; R11 is (C3-C6)cycloalkyl or (C1-C6)alkyl optionally substituted with –NH2, –O–(C1- C6)alkyl, –O–(C1-C6)alkyl–NH2, or –O–(C1-C6)alkyl–O–(C1-C6)alkyl–NH2; L1 is absent, (C1-C6)alkylene or (C3-C7)carbocyclyl; wherein said alkylene or carbocyclyl is further optionally substituted by one or more, identical or different RA groups; each RA is independently oxo, alkyl, alkenyl, alkynyl, halo, haloalkyl, carbocyclyl, heterocyclyl, hydroxy, alkoxy, cycloalkoxy, heterocycloalkoxy, haloalkoxy, aryloxy, heteroaryloxy, aralkyloxy, alkyenyloxy, alkynyloxy, amino, alkylamino, cycloalkylamino, heterocycloalkylamino, arylamino, heteroarylamino, aralkylamino, N-alkyl-N-arylamino, N-alkyl-N-heteroarylamino, N-alkyl-N- aralkylamino, hydroxyalkyl, aminoalkyl, alkylthio, haloalkylthio, alkylsulfonyl, haloalkylsulfonyl, cycloalkylsulfonyl, heterocycloalkylsulfonyl, arylsulfonyl, heteroarylsulfonyl, aminosulfonyl, alkylaminosulfonyl, cycloalkylaminosulfonyl, heterocycloalkylaminosulfonyl, arylaminosulfonyl, heteroarylaminosulfonyl, N- alkyl-N-arylaminosulfonyl, N-alkyl-N-heteroarylaminosulfonyl, formyl, alkylcarbonyl, haloalkylcarbonyl, alkenylcarbonyl, alkynylcarbonyl, carboxy, alkoxycarbonyl, alkylcarbonyloxy, amino, alkylsulfonylamino, haloalkylsulfonylamino, cycloalkylsulfonylamino, heterocycloalkylsulfonylamino, arylsulfonylamino, heteroarylsulfonylamino, aralkylsulfonylamino, alkylcarbonylamino, haloalkylcarbonylamino, cycloalkylcarbonylamino, heterocycloalkylcarbonylamino, arylcarbonylamino, heteroarylcarbonylamino, aralkylsulfonylamino, aminocarbonyl, alkylaminocarbonyl, cycloalkylaminocarbonyl, heterocycloalkylaminocarbonyl, arylaminocarbonyl, heteroarylaminocarbonyl, N-alkyl-N-arylaminocarbonyl, N-alkyl-N- heteroarylaminocarbonyl, cyano, nitro, azido, or phosphinyl; Y1 is –CN, –OH, halo, (C1-C4)alkoxy, (C1-C4)haloalkyl, (C1-C4)haloalkoxy, 4- to 7- membered heterocyclyl, (C3-C6)carbocyclyl, –NR7’R8’, –C(O)R9,–C(O)NR10R11; wherein said alkyl, carbocyclyl, or heterocyclyl is further optionally substituted by one or more, identical or different groups selected from (C1-C4)alkyl, halo, (C1-C4)haloalkyl, –CN, –OH, and –NH2; R7’ and R8’ are each independently hydrogen, (C1-C6)alkyl, (C3-C7)carbocyclyl, 4- to 7-membered heterocyclyl, (C6-C10)aryl, or monocyclic or bicyclic 5- to 10-membered heteroaryl; wherein said alkyl, carbocyclyl, heterocyclyl, aryl or heteroaryl is further optionally substituted by one or more, identical or different RA groups, or R7’ and R8’ together with the nitrogen atom to which they are attached form a 3- to 7-membered heterocyclyl, wherein said heterocyclyl is further optionally substituted by one or more, identical or different RA groups, or L1 is (C2-C4)alkylene which is bound to R7’ to form a 4- to 6-membered heterocyclyl group; R1’ is absent, hydrogen, –CN, –C≡CH, –OH, –SH, –NH2, –COOH, halo, (C1-C6)alkyl, –O– (C1-C6)alkyl, (C1-C6)haloalkyl, amido, carboxy, carbamoyl, sulfamoyl, phenyl, 5- to 8-membered heterocyclyl, –NR7R8, –C(O)R9, or –C(O)NR10R11; wherein said alkyl, phenyl, or heterocyclyl is further optionally substituted by one or more, identical or different RA groups, or R1’ and L1 together with the same carbon atom to which they are attached form a spiro (C3-C7)carbocyclyl group or a 4- to 7-membered heterocyclyl group; wherein said carbocyclyl or heterocyclyl, is further optionally substituted by one or more, identical or different RA groups; is , , , , or ; X3 and X4 are independently CR12 or N; X5 is CH or N; R12 is hydrogen, (C1-C4)alkyl, halo, hydroxy, amino, (C1-C4)alkoxy, (C1-C4)haloalkyl, (C1-C4)haloalkoxy, (C2-C4)alkenyl, (C2-C4)alkynyl, nitro, cyano, NH(C1-C4)alkyl, or N(C1- C4 alkyl)2; R2 is hydrogen, (C1-C6)alkyl, (C3-C6)carbocyclyl, 4- to 7-membered heterocyclyl, (C3-C7)carbocyclyl(C1-C6)alkyl, or 4- to 7-membered heterocyclyl(C1-C6)alkyl; wherein said alkyl, carbocyclyl, or heterocyclyl is further optionally substituted by one or more, identical or different R13 groups, wherein R13 is (C1-C6)alkyl, (C1-C6)alkoxy, halo, amino, hydroxyl, haloalkyl, NH(C1-C6)alkyl, or N((C1-C6)alkyl)2, (C3-C6)carbocyclyl, or 4- to 7-membered heterocyclyl, or R2 is –L2-Y2-Z; L2 is absent or (C1-C5)alkylene optionally substituted by one or more substituents selected from (C1-C2)alkyl and oxo; Y2 is absent, O, S, S(O), S(O)2, NR’, C(O), C(O)O, OC(O), C(O)N(R’), N(R’)C(O), N(R’)C(O)N(R’), N(R’)C(O)O, OC(O)N(R’), S(O)2N(R’), or N(R’)S(O)2; each R’ is independently hydrogen or (C1-C4)alkyl; Z is hydrogen, (C1-C6)alkyl, (C2-C6)alkenyl, (C2-C6)alkynyl, (C3-C10)carbocyclyl, or 3- to 10-membered heterocyclyl; wherein Z is optionally substituted by one or more substituents independently selected from (C1-C4)alkyl, halo, (C1-C4)haloalkyl, (C1-C4)haloalkoxy, amino, (C1-C4)aminoalkyl, cyano, hydroxy, carboxy, carbamoyl, sulphamoyl, mercapto, ureido, NRrRs, ORr, C(O)Rr, C(O)ORr, OC(O)Rr, C(O)NRrRs, N(Rr)C(O)Rr, S(O)0-2Rr, S(O)2NRrRs, N(Rr)SO2Rr, Si(Rr)(Rs)Rt and (CH2)1-3NRrRs; wherein Rr, Rs, and Rt are each independently hydrogen, (C1-C6)alkyl, or (C3-C6)cycloalkyl; or Rr and Rs together with the nitrogen atom to which they are attached form a 4- to 9-membered heterocyclyl which is optionally substituted by one or more substituents selected from (C1-C4)alkyl, halo, (C1-C4)haloalkyl, (C1- C4)haloalkoxy, (C1-C4)alkoxy, (C1-C4)alkylamino, amino, cyano, and hydroxy; R3 is –L3CR14R15R16, or –CH=CH–R16; L3 is absent, O, S, (C1-C4)alkylene, -O-(C1-C4)alkylene, or -S-(C1-C4)alkylene; R14 is hydrogen or (C1-C4)alkyl; R15 is hydrogen or (C1-C4)alkyl, or R14 and R15 together with the carbon atom to which they are attached form a (C3- C5)carbocyclyl, 4- to 7-membered heterocyclyl, or C=O; R16 is (C1-C6)alkyl, –NR17R18, –OR17, –C(O)R17, –C(O)OR17, –N(R18)C(O)R17, – C(O)NR17R18, –S(O)–(C1-C6)alkyl, –S(O)2–(C1-C6)alkyl, –P(O)–(C1-C6 alkyl)2, –C(NH)NH2, –(C1-C4)alkyl–NR18C(O)R17, or 4- to 7-membered heterocyclyl; R17 is hydrogen, 3- to 6-membered heterocyclyl, or (C1-C4)alkyl optionally substituted by one or more, identical or different groups selected from OH, Cl, F, CF3, N(C1-C4 alkyl)2, (C3-C6)carbocyclyl, 3- to 6-membered heterocyclyl, (C2-C4)alkenyl, and (C2-C4)alkynyl; R18 is hydrogen or (C1-C4)alkyl; R4 is hydrogen, methyl, –(CH2)1-3W1W2, or ; W1 is CR19R19’ or C(O); R19 and R19’ are independently hydrogen, (C1-C2)alkyl, fluoro, hydroxy, cyano, nitro, (C1-C2)alkoxy, (C1-C2)haloalkyl, (C1-C2)haloalkoxy, amino, NH(C1-C2)alkyl, or N(C1- C2 alkyl)2, or R19 and R19’ together with the carbon atom to which they are attached form C(O), (C3- C6)carbocyclyl or 3- to 6-membered heterocyclyl, which is optionally substituted by one or more substituents independently selected from (C1-C2)alkyl, halo, (C1-C2)haloalkyl, (C1- C2)haloalkoxy, (C1-C2)alkoxy, (C1-C2)alkylamino, amino, cyano, and hydroxy; W2 is cyano, hydroxy, 5- or 6-membered heteroaryl, phenyl, C(O)-(C1-C2)alkyl, S(O)2- (C1-C2)alkyl, C(O)OCH3, C(O)NHCH3, CR20R21R22, amino, NH(C1-C2)alkyl, or N(C1-C2 alkyl)2: R20 is hydrogen, (C1-C2)alkyl, fluoro, chloro, bromo, hydroxy, amino, cyano, nitro, (C1-C2)alkoxy, (C1-C2)haloalkyl, or (C1-C2)haloalkoxy; R21 is hydrogen, (C1-C2)alkyl, fluoro, chloro, bromo, hydroxy, cyano, nitro, (C1- C2)alkoxy, (C1-C2)haloalkyl, (C1-C2)haloalkoxy, or –Y3-L4-Z2; Y3 is absent, O, S, S(O), S(O)2, NR’, C(O), C(O)O, OC(O), C(O)N(R’), N(R’)C(O), S(O)2N(R’), or N(R’)SO2; L4 is absent or (C1-C2)alkylene; Z2 is hydrogen, (C1-C6)alkyl, (C2-C4)alkenyl, (C2-C4)alkynyl, phenyl, (C3- C6)carbocyclyl, or 4- to 6-membered heterocyclyl, wherein Z2 is optionally substituted by one or more substituents independently selected from (C1-C4)alkyl, halo, (C1-C4)haloalkyl, (C1-C4)haloalkoxy, (C1-C4)alkoxy, (C1-C4)alkylamino, amino, cyano, hydroxy, C(O)R’, C(O)OR’, OC(O)R’, C(O)NR’R’, and N(R’)C(O)R’, wherein each R’ is independently hydrogen or (C1-C4)alkyl; or R20 and R21 together with the carbon atom to which they are attached form (C3- C6)carbocyclyl or 3- to 6-membered heterocyclyl, optionally substituted by one or more substituents selected from (C1-C2)alkyl, halo, (C1-C2)haloalkyl, (C1-C2)haloalkoxy, (C1- C2)alkoxy, (C1-C2)alkylamino, amino, cyano, and hydroxy; R22 is (C1-C2)alkyl, -C(O)OR’’, OR’’, -C(O)NR’’, NR’’R’’, phenyl, or 5-membered heteroaryl, wherein each R’’ is independently hydrogen or (C1-C2)alkyl; A” is (C4-C6)carbocyclyl or 4- to 6-membered heterocyclyl, optionally substituted with one or more substituents independently selected from (C1-C2)alkyl, halo, hydroxy, oxo, cyano, and (C1-C2)alkoxy; W3 is NR23 or CR24R24’; R23 is hydrogen, (C1-C2)alkyl, (C1-C4)haloalkyl, (C1-C4)hydroxyalkyl, -C(O)CH3, or –C(O)O-(C1-C4)alkyl; R24 and R24’ are independently hydrogen, (C1-C2)alkyl, cyclopropyl, fluoro, chloro, bromo, hydroxy, amino, cyano, nitro, (C1-C2)haloalkyl, (C1-C2)haloalkoxy, (C1- C2)alkoxy, -C(O)OR’’, NR’’R’’, phenyl, or 5-membered heteroaryl; R5 is hydrogen, (C1-C4)alkyl, (C3-C6)cycloalkyl, (C1-C4)haloalkyl, or cyano, wherein said alkyl or cycloalkyl is optionally substituted by one or more substituents selected from (C1-C4)alkyl, (C3-C6)cycloalkyl, hydroxy, (C1-C2)alkoxy, amino, NH(C1-C2)alkyl, N((C1-C2)alkyl)2, (C1- C2)aminoalkyl, and halo; R5’ is hydrogen, (C1-C4)alkyl, cyano, (C1-C4)haloalkyl, or –Y4-L5-Z3; Y4 is absent, C(O)O, or C(O)N(R’’); L5 is absent or (C1-C2)alkylene; Z3 is hydrogen, (C1-C6)alkyl, phenyl, (C3-C6)cycloalkyl, or 4- to 6-membered heterocyclyl, wherein Z3 is optionally substituted by one or more substituents independently selected from (C1-C2)alkyl, halo, (C1-C2)haloalkyl, (C1-C2)haloalkoxy, (C1-C2)alkoxy, amino, nitro, cyano, and hydroxy, or R5 and R5’, together with the carbon atom to which they are attached, form a (C4-C6)carbocyclyl, or 4- to 6-membered heterocyclyl; A’ is a 6- or 7-membered heterocyclyl, which in addition to R5 and R5’, is optionally further substituted by one more substituents independently selected from oxo, (C1-C2)alkyl, cyclopropyl, spiro-cyclopropyl, halo, (C1-C2)haloalkyl, (C1-C2)haloalkoxy, (C1-C2)alkoxy, amino, cyano, and hydroxy; X6 is CR25 or N; R25 is hydrogen, fluor, chloro, or methyl; R6 is hydrogen, (C1-C2)alkyl, (C3-C4)cycloalkyl, (C1-C2)haloalkyl, cyano, (C2-C4)alkenyl, or (C2-C4)alkynyl; R6’ is (C1-C4)alkyl, cyano, (C1-C4)haloalkyl, or –Y5-L6-Z4; Y5 is absent, C(O), C(O)O, OC(O), C(O)N(R’’), or S(O)2N(R’’); L6 is absent or (C1-C2)alkylene optionally substituted by one or more substituents selected from (C1-C2)alkyl and oxo; Z4 is hydrogen, (C1-C6)alkyl, (C2-C4)alkenyl, (C2-C4)alkynyl, phenyl, (C3- C6)carbocyclyl, (C3-C6)cycloalkenyl, or 4- to 6-membered heterocyclyl, wherein Z4 is optionally substituted by one or more substituents independently selected from oxo, (C1- C4)alkyl, (C3-C6)cycloalkyl, halo, (C1-C4)haloalkyl, (C1-C4)haloalkoxy, (C1-C4)alkoxy, (C1- C4)alkylamino, amino, nitro, cyano, hydroxy, C(O)Ru, C(O)ORu, OC(O)Ru, C(O)NRuRu, and N(Ru)C(O)Ru, wherein each Ru is independently hydrogen, (C1-C4)alkyl, or (C3- C6)cycloalkyl, or Z4 is –Q-L7-W4, wherein Q is absent, O, NH, or N(C1-C2)alkyl; L7 is absent or (C1-C2)alkylene optionally substituted by one or more substituents selected from oxo and (C1-C2)alkyl; W4 is (C1-C4)alkyl, phenyl, (C3-C6)cycloalkyl, (C3-C6)cycloalkenyl, or 5- or 6-membered heterocyclyl, wherein W4 is optionally substituted by one or more substituents independently selected from (C1-C4)alkyl, halo, (C1-C4)haloalkyl, (C1-C4)haloalkoxy, (C1-C4)alkoxy, (C1- C4)alkylamino, amino, nitro, cyano, or hydroxy, or R6 and R6’, together with the carbon atom to which they are attached, for a (C3-C10)carbocyclyl or a 4- to 10-membered heterocyclyl, which is optionally substituted by one or more substituents independently selected from oxo, (C1-C2)alkyl, halo, (C1-C2)haloalkyl, (C1-C2)haloalkoxy, (C1- C2)alkoxy, (C1-C2)alkylamino, amino, nitro, cyano, or hydroxy; or the (C3-C10)carbocyclyl or 4- to 10-membered heterocyclyl is optionally fused to a 5- or 6-membered heteroaryl or phenyl ring, and the 5- or 6-membered heteroaryl or phenyl ring is optionally substituted by (C1-C2)alkyl, halo, (C1-C2)haloalkyl, (C1-C2)haloalkoxy, (C1-C2)alkoxy, (C1-C2)alkylamino, amino, nitro, cyano, or hydroxy; and R6’’ is hydrogen, (C1-C4)alkyl, (C1-C2)haloalkyl, (C1-C2)alkoxy, (C1-C2)haloalkoxy, cyano, nitro, acetylenyl, phenyl, or 5- or 6-membered heteroaryl, wherein said alkyl, phenyl, or heteroaryl is optionally substituted by one or more substituents independently selected from halo, hydroxy, and amino. 2. The compound of claim 1, wherein R1 is methyl, –OH, –NH2, -CH2CH2OH, -CH2CH2NH2, , or . 3. The compound of claim 2, wherein R1 is methyl. 4. The compound of claim 2, wherein R1 is –OH or -CH2CH2OH. 5. The compound of claim 2, wherein R1 is –NH2 or -CH2CH2NH2. 6. The compound of any one of claims 1-5, wherein X1 is N, CH, CCl, or CF. 7. The compound of claim 6, wherein X1 is N. 8. The compound of claim 6, wherein X1 is CH. 9. The compound of claim 6, wherein X1 is CCl. 10. The compound of claim 6, wherein X1 is CF. 11. The compound of any one of claims 1-10, wherein X2 is CH2, CHF, CHCl, or CF2. 12. The compound of claim 11, wherein X2 is CH2. 13. The compound of claim 11, wherein X2 is CHF. 14. The compound of claim 11, wherein X2 is CHCl. 15. The compound of claim 11, wherein X2 is CF2. 16. The compound of any one of claims 1-15, wherein is and the compound of formula (I) has the structure of formula I-1, (I-1), or a pharmaceutically acceptable salt or stereoisomer thereof. 17. The compound of claim 16, wherein X3 is CH. 18. The compound of claim 16, wherein X3 is N. 19. The compound of claim 16, wherein X3 is CF. 20. The compound of claim 16, wherein X3 is COMe. 21. The compound of any one of claims 16-20, wherein X4 is CH. 22. The compound of any one of claims 16-21, wherein R2 is (C1-C2)alkyl, 4-membered heterocyclyl, (C3)carbocyclyl(C1)alkyl, or 4-membered heterocyclyl(C1)alkyl; wherein said alkyl, carbocyclyl, or heterocyclyl is further optionally substituted by one or more, identical or different R13 groups. 23. The compound of claim 22, wherein R2 is methyl. 24. The compound of claim 22, wherein the heterocyclyl contains 1 heteroatom selected from N and O. 25. The compound of any one of claims 16-24, wherein R3 is –L3CR14R15R16. 26. The compound of claim 25, wherein L3 is -O-(C1)alkylene. 27. The compound of claim 25, wherein R14 and R15 together with the carbon atom to which they are attached form a (C3-C5)carbocyclyl, 4- to 7-membered heterocyclyl, or C=O. 28. The compound of claim 27, wherein R14 and R15 together with the same carbon atom to which they are attached form C=O. 29. The compound of claim 27, wherein R14 and R15 together with the same carbon atom to which they are attached form an oxetane ring. 30. The compound of claim 25, wherein R16 is (C1-C6)alkyl, –NR17R18, or –OR17. 31. The compound of claim 30, wherein R16 is methyl, hydroxyl, amino, or NHMe. 32. The compound of claim 16, wherein the compound is of formula I-1a, I-1b, I-1c, I-1d, I-1e, I- 1f, I-1g, I-1h, I-1i, or I-1j: (I-1a), (I-1b), (I-1c), (I-1d), (I-1e), (I-1f), (I-1g), (I-1h), (I-1i), (I-1j), or a pharmaceutically acceptable salt or stereoisomer thereof. 33. The compound of claim 32, wherein the compound is of formula I-1a’, I-1b’, I-1c’, I-1d’, or I-1e’: (I-1a’), (I-1b’), (I-1c’), (I-1d’), or (I-1e’), or a pharmaceutically acceptable salt or stereoisomer thereof. 34. The compound of claim 32, wherein the compound is of formula I-1k, I-1l, I-1m, I-1n, I-1o, I-1p, I-1q, I-1r, I-1s, I-1t, I-1u, I-1v, I-1w, I-1x, I-1y, I-1z, I-1aa, I-1bb, I-1cc, or I-1dd: (I-1k), (I-1l), (I-1m), (I-1n), (I-1o), (I-1p), (I-1q), (I-1r), (I-1s), (I-1t), (I-1u), (I-1v), (I-1w), (I-1x), (I-1y), (I-1z), (I-1aa), (I-1bb), (I-1cc), (I-1dd), or a pharmaceutically acceptable salt or stereoisomer thereof. 35. The compound of any one of claims 1-15, wherein is and the compound of formula (I) has the structure of formula I-2, (I-2), or a pharmaceutically acceptable salt or stereoisomer thereof. 36. The compound of claim 35, wherein X3 is CH. 37. The compound of claim 35 or 36, wherein X4 is CH. 38. The compound of any one of claims 35-37, wherein R2 is (C1-C2)alkyl, 4-membered heterocyclyl, (C3)carbocyclyl(C1)alkyl, or 4-membered heterocyclyl(C1)alkyl; wherein said alkyl, carbocyclyl, or heterocyclyl is further optionally substituted by one or more, identical or different R13 groups. 39. The compound of claim 38, wherein R2 is methyl. 40. The compound of claim 38, wherein the heterocyclyl contains 1 heteroatom selected from N and O. 41. The compound of any one of claims 35-40, wherein R4 is –(CH2)2W1W2. 42. The compound of claim 41, wherein W1 is CR21R21’. 43. The compound of claim 42, wherein R21 and R21’ are both methyl. 44. The compound of any one of claims 41-43, wherein W2 is cyano, hydroxy, or amino . 45. The compound of claim 44, wherein W2 is hydroxy. 46. The compound of claim 35, wherein the compound is of formula I-2a, I-2b, I-2c, I-2d, I-2e, I- 2f, I-2g, I-2h, I-2i, or I-2j: (I-2a), (I-2b), (I-2c), (I-2d), (I-2e), (I-2f), (I-2g), (I-2h), (I-2i), (I-2j), or a pharmaceutically acceptable salt or stereoisomer thereof. 47. The compound of claim 46, wherein the compound is of formula I-2k, I-2l, I-2m, I-2n, I-2o, I-2p, I-2q, I-2r, I-2s, I-2t, I-2u, I-2v, I-2w, I-2x, I-2y, I-2z, I-2aa, I-2bb, I-2cc, or I-2dd: (I-2k), (I-2l), (I-2m), (I-2n), (I-2o), (I-2p), (I-2q), (I-2r), (I-2s), (I-2t), (I-2u), (I-2v), (I-2w), (I-2x), (I-2y), (I-2z), (I-2aa), (I-2bb), (I-2cc), (I-2dd), or a pharmaceutically acceptable salt or stereoisomer thereof. 48. The compound of any one of claims 1-15, wherein is and the compound of formula (I) has the structure of formula I-3, (I-3), or a pharmaceutically acceptable salt or stereoisomer thereof. 49. The compound of claim 48, wherein X3 is CH. 50. The compound of claim 48 or 49, wherein X4 is CH. 51. The compound of any one of claims 48-50, wherein R2 is (C1-C2)alkyl, 4-membered heterocyclyl, (C3)carbocyclyl(C1)alkyl, or 4-membered heterocyclyl(C1)alkyl; wherein said alkyl, carbocyclyl, or heterocyclyl is further optionally substituted by one or more, identical or different R13 groups. 52. The compound of claim 48-51, wherein A’ is a 7-membered heterocyclyl, wherein the heterocyclyl contains 2 heteroatoms selected from N and O, and which in addition to R5 and R5’, is optionally further substituted by one more substituents independently selected from oxo, (C1- C2)alkyl, cyclopropyl, spiro-cyclopropyl, halo, (C1-C2)haloalkyl, (C1-C2)alkoxy, amino, cyano, and hydroxy. 53. The compound of claim 48, wherein the compound is of formula I-3a, I-3b, I-3c, I-3d, I-3e, I- 3f, I-3g, I-3h, I-3i, I-3j, I-3k, I-3l, I-3m, I-3n, I-3o, I-3p, I-3q, I-3r, I-3s, or I-3t: (I-3a), (I-3b), (I-3c), (I-3d), (I-3e), (I-3f), (I-3g), (I-3h), (I-3i), (I-3j), (I-3k), (I-3l), (I-3m), (I-3n), (I-3o), (I-3p), (I-3q), (I-3r), (I-3s), (I-3t), or a pharmaceutically acceptable salt or stereoisomer thereof, wherein each R25 is independently oxo, (C1-C2)alkyl, cyclopropyl, spiro- cyclopropyl, halo, (C1-C2)haloalkyl, (C1-C2)alkoxy, amino, cyano, and hydroxy; and n is 0-3. 54. The compound of claim 48, wherein the compound is of formula I-3u or I-3v: (I-3u), (I-3v), or a pharmaceutically acceptable salt or stereoisomer thereof. 55. The compound of any one of claims 1-15, wherein is and the compound of formula (I) has the structure of formula I-4, (I-4), or a pharmaceutically acceptable salt or stereoisomer thereof. 56. The compound of claim 55, wherein X3 is CH. 57. The compound of claim 55 or 56, wherein X4 is CH. 58. The compound of any one of claims 55-57, wherein R2 is (C1-C2)alkyl, 4-membered heterocyclyl, (C3)carbocyclyl(C1)alkyl, or 4-membered heterocyclyl(C1)alkyl; wherein said alkyl, carbocyclyl, or heterocyclyl is further optionally substituted by one or more, identical or different R13 groups. 59. The compound of claim 55, wherein the compound is of formula I-4a, I-4b, I-4c, I-4d, I-4e, I- 4f, I-4g, I-4h, I-4i, or I-4j: (I-4a), (I-4b), (I-4c), (I-4d), (I-4e), (I-4f), (I-4g), (I-4h), (I-4i), (I-4j), or a pharmaceutically acceptable salt or stereoisomer thereof. 60. The compound of any one of claims 1-15, wherein is and the compound of formula (I) has the structure of formula I-4, (I-5), or a pharmaceutically acceptable salt or stereoisomer thereof. 61. The compound of claim 60, wherein X3 is CH. 62. The compound of claim 60 or 61, wherein X4 is CH. 63. The compound of any one of claims 60-62, wherein R2 is 4-membered heterocyclyl or 4- membered heterocyclyl(C2)alkyl; wherein said alkyl, carbocyclyl, or heterocyclyl is further optionally substituted by one or more, identical or different R13 groups. 64. The compound of claim 60, wherein the compound is of formula I-5a, I-5b, I-5c, I-5d, I-5e, I- 5f, I-5g, I-5h, I-5i, or I-5j: (I-5a), (I-5b), (I-5c), (I-5d), (I-5e), (I-5f), (I-5g), (I-5h), (I-5i), (I-5j), or a pharmaceutically acceptable salt or stereoisomer thereof. 65. The compound of claim 1, which is: (1), (2), (3), (4), (5), (6), (7), (8), (9), (10), (11), (12), (13), (14), (15), (16), (17), (18), (19), (20), (21), (22), (23), (24), (25), (26), (27), (28), (29), O NC Cl N O H2N N N N O F H HN F F F (30), (31), (32), (33), (34), (35), (36), (37), (38), (39), (40), (41), (42), (43), (44), (45), (46), (47), (48), (49), (50), (51), (52), (53), (54), (55), (56), (57), (58), (59), (60), (61), (62), (63), (64), (65), (66), (67), (68), (69), (70), (71), (72), (73), (74), (75), (76), (77), (78), (79), (80), (81), (82), (83), NC F N O H2N N N N N H O F O F NH (84), (85), (86), (87), (88), (89), (90), or (91), or a pharmaceutically acceptable salt or stereoisomer thereof. 66. A pharmaceutical composition, comprising a therapeutically effective amount of the compound or pharmaceutically acceptable salt or stereoisomer of any one of claims 1-65, and a pharmaceutically acceptable carrier. 67. The pharmaceutical composition of claim 66, which is in the form of a liquid or a solid. 68. A method of treating a disease or disorder characterized by aberrant B-cell lymphoma 6 (BCL6) activity, comprising administering to a subject in need thereof a therapeutically effective amount of the compound or a pharmaceutically acceptable salt or stereoisomer thereof of any one of claims 1-65. 69. The method of claim 68, wherein the disease or disorder is a lymphoid malignancy. 70. The method of claim 69, wherein the lymphoid malignancy is peripheral T-cell lymphoma (PTCL), diffuse large B-cell lymphoma (DLBCL), mantle cell lymphoma (MCL), follicular lymphoma (FL), chronic lymphocytic leukemia (CLL), acute lymphoblastic leukemia/lymphoma (ALL), or cutaneous T-cell lymphoma. 71. The method of claim 69 or 70, further comprising administering an additional anti-cancer agent. 72. The method of claim 71, wherein the additional anti-cancer agent is an enhancer of zeste homolog 2 (EZH2) inhibitor. |
EXAMPLES [00134] Example 1: Synthesis of 2-((6-((5-cyano-4-((3S,5R)-4,4-difluoro-3,5- dimethylpiperidin-1-yl)pyrimidin-2-yl)amino)-1-methyl-2-oxo- 1,2-dihydroquinolin-3-yl)oxy)-N- methylacetamide (1) [00135] Dimethyl 2,4-dimethyl-3-oxopentanedioate [00136] K2CO3 (39.68 g, 287.11 mmol) was added to a solution of dimethyl 3-oxopentanedioate (20 g, 114.84 mmol) in THF (240 mL) at 20 °C and the resulting mixture was stirred at 45°C for 20 minutes. CH 3 I (32.60 g, 229.69 mmol) was then added and the reaction mixture was heated to 60°C and was stirred for 100 minutes. The reaction mixture was cooled to 20°C, filtered, and the filter cake was washed with THF (400 mL). The filtrate was dried in vacuum to give the title compound as a crude yellow oil (40 g). 1 H NMR (400 MHz, CDCl 3 ) δ 3.80-3.71 (m, 6H), 1.44- 1.34 (m, 6H). [00137] Dimethyl 1-benzyl-3,5-dimethyl-4-oxopiperidine-3,5-dicarboxylate [00138] Aq. HCl (1 M, 21.76 mL), phenylmethanamine (11.66 g, 108.80 mmol) and formaldehyde (17.66 g, 217.60 mmol, 37% purity) were added to a solution of dimethyl 2,4- dimethyl-3-oxo-pentanedioate (22 g, 108.80 mmol) in MeOH (400 mL) at 0°C. The reaction mixture was stirred at 15°C for 12 hours. The reaction mixture was concentrated under reduced pressure to give a residue that was purified by column chromatography (SiO 2 , Petroleum ether/Ethyl acetate=100/1 to 20/1) to give the title compound as a yellow oil (15 g, 41%). 1 H NMR (400 MHz, CDCl 3 ) δ 7.37-7.27 (m, 5H), 3.67 (s, 6H), 3.65 (s, 2H), 3.53 (d, J = 11.6 Hz, 2H), 1.30 (s, 6H). [00139] (3S,5R)-1-Benzyl-3,5-dimethylpiperidin-4-one [00140] A solution of dimethyl 1-benzyl-3,5-dimethyl-4-oxo-piperidine-3,5-dicarboxylate (15 g, 44.99 mmol) in aq. HCl (150 mL, 4 M) was stirred at 100°C for 24 hours. The reaction mixture was concentrated under reduced pressure and adjusted pH to 8 with 2 M NaOH and then the mixture was extracted with ethyl acetate (200 mL x3). The organic phases were combined and dried with anhydrous Na2SO4, filtered and concentrated under reduced pressure. The residue was purified by column chromatography (SiO2, Petroleum ether/Ethyl acetate=20/1 to 5/1) to give the title compound as a yellow oil (7.2 g, 74%). 1 H NMR (400 MHz, CDCl 3 ) δ 7.33-7.27 (m, 5H), 3.57 (s, 2H), 3.12 (dd, J = 8.8, 5.2 Hz 2H), 2.69 (dd, J = 10.8, 5.6 Hz 2H), 2.05-1.99 (m, 2H), 0.93 (d, J = 6.8 Hz, 6H). [00141] (3S,5R)-1-Benzyl-4,4-difluoro-3,5-dimethylpiperidine [00142] DAST (55.63 g, 345.14 mmol) was added to a solution of (3S,5R)-1-benzyl-3,5- dimethyl-piperidin-4-one (5 g, 23.01 mmol) in DCM (50 mL) and the reaction mixture was stirred at 50°C for 12 hours. The pH was adjusted to 7~8 with sat. NaHCO3 and extracted with ethyl acetate (500 mL x3). The organic phases were combined and dried with anhydrous Na 2 SO 4 , filtered and concentrated under reduced pressure. The residue was purified by column chromatography (SiO2, Petroleum ether/Ethyl acetate=1/0 to 20/1) to give the title compound as a yellow oil (2.5 g, 45%). 1 H NMR (400 MHz, CDCl 3 ) δ 7.28-7.21 (m, 5H), 3.46 (s, 2H), 2.71 (d, J = 10.8 Hz, 2H), 2.09-2.03 (m, 2H), 1.96-1.90 (m, 2H), 0.93 (d, J = 6.8 Hz, 6H). [00143] (3S,5R)-4,4-Difluoro-3,5-dimethylpiperidine [00144] TFA (4.76 g, 41.79 mmol) and Pd/C (0.8 g, 10% purity) were added to a solution of (3S,5R)-1-benzyl-4,4-difluoro-3,5-dimethyl-piperidine (2.5 g, 10.45 mmol) in MeOH (25 mL) under a N2 atmosphere and the reaction mixture was stirred under H2 (15 Psi) at 60°C for 12 hours. The reaction mixture was filtered and concentrated under reduced pressure to give the title compound as a white solid (2.3 g, 84%, TFA salt). 1 H NMR (400 MHz, CDCl 3 ) δ 9.64-9.51 (m, 2H), 3.34 (d, J = 12.4 Hz, 2H), 2.88-2.80 (m, 2H), 2.46-2.37 (m, 2H), 1.12 (d, J = 6.8 Hz, 6H). [00145] 2-Chloro-4-((3S,5R)-4,4-difluoro-3,5-dimethylpiperidin-1-yl) pyrimidine-5- carbonitrile [00146] A mixture of 2,4-dichloropyrimidine-5-carbonitrile (300 mg, 1.72 mmol), (3R,5S)-4,4- difluoro-3,5-dimethyl-piperidine (453.83 mg, 1.72 mmol, TFA salt), and DIEA (557.11 mg, 4.31 mmol) in DMF (5 mL) was stirred at 100°C for 1 hour under a N2 atmosphere. The reaction mixture was concentrated under reduced pressure to give a residue that was purified by reversed- phase HPLC (neutral condition: Column: 80 g Agela C18; Mobile phase: [water-ACN]; B%: 30- 60% 15 min; 60% 5 min) to give 4-chloro-2-[(3R,5S)-4,4-difluoro-3,5-dimethyl-1- piperidyl]pyrimidine-5-carbonitrile as a white solid (150 mg, 30%, LCMS: [M+H + ] = 287, retention time = 0.928 min) and the title compound as a white solid (60 mg, 12%, LCMS: [M+H + ] = 287, retention time = 0.885 min). [00147] 2-((6-((5-cyano-4-((3S,5R)-4,4-difluoro-3,5-dimethylpiperidi n-1-yl)pyrimidin-2- yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-met hylacetamide (1) [00148] A mixture of 2-[(6-amino-1-methyl-2-oxo-3-quinolyl)oxy]-N-methyl-acetamid e (30 mg, 114.82 µmol), 2-chloro-4-[(3R,5S)-4,4-difluoro-3,5-dimethyl-1-piperidyl]py rimidine-5- carbonitrile (36.21 mg, 126.30 µmol), and 4-methylbenzenesulfonic acid hydrate (26.21 mg, 137.79 µmol) in DMF (1 mL) was stirred at 130°C for 12 hours under a N2 atmosphere. H2O (15 mL) was added to the reaction mixture and the precipitated solids were filtered and washed with H 2 O (30 mL) and ethyl acetate (30 mL). The solids were dried under reduced pressure. The solids were triturated with ethanol (5 mL) at 15°C for 30 minutes to give the title compound as a yellow solid (21.2 mg, 35%). 1 H NMR (400 MHz, DMSO-d6) δ 10.05 (s, 1H), 8.49 (s, 1H), 7.90-7.89 (m, 2H), 7.68 (dd, J = 8.8, 2.0 Hz, 1H), 7.46 (d, J = 9.2 Hz, 1H), 7.18 (s, 1H), 4.62 (d, J = 13.6 Hz, 2H), 4.56 (s, 2H), 3.66 (s, 3H), 2.93 (t, J = 12.8 Hz, 2H), 2.66 (d, J = 4.8 Hz, 3H), 2.33-2.27 (m, 2H), 1.00 (d, J = 6.8 Hz, 6H). LCMS: [M+H + ] = 512.2.
[00149] Example 2: Synthesis of 2-((6-((3-chloro-5-cyano-6-((3S,5R)-4,4-difluoro-3,5- dimethylpiperidin-1-yl) pyridin-2-yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl) oxy)-N- methylacetamide (2) [00150] 2-((6-((3,6-Dichloro-5-cyanopyridin-2-yl)amino)-1-methyl-2-o xo-1,2-dihydroquinolin- 3-yl)oxy)-N-methylacetamide [00151] DIEA (197.86 mg, 1.53 mmol) was added to a mixture of 2,5,6-trichloropyridine-3- carbonitrile (158.79 mg, 765.47 µmol) and 2-[(6-amino-1-methyl-2-oxo-3-quinolyl)oxy]-N- methyl-acetamide (200 mg, 765.47 µmol) in DMF (3 mL) and the reaction mixture was stirred at 100°C for 4 hours under a N 2 . The reaction mixture was cooled to 15°C, water (~5 mL) was added and a precipitate formed. The reaction mixture was filtered and the filter cake was washed with EtOAc (~20 mL) and concentrated in vacuum to give the title compound as a yellow solid (250 mg, 76%). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.64 (s, 1H), 8.39 (s, 1H), 7.93 (s, 1H), 7.73 (s, 1H), 7.66 (d, J = 8.4 Hz, 1H), 7.53 (d, J = 8.8 Hz, 1H), 7.22 (s, 1H), 4.58 (s, 2H), 3.69 (s, 3H), 2.67 (s, 3H). [00152] 2-((6-((3-Chloro-5-cyano-6-((3S,5R)-4,4-difluoro-3,5-dimethy lpiperidin-1-yl)pyridin- 2-yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-m ethylacetamide (2) [00153] DIPEA (298.99 mg, 2.31 mmol) was added to a solution of 2-[[6-[(3,6-dichloro-5- cyano-2-pyridyl)amino]-1-methyl-2-oxo-3-quinolyl]oxy]-N-meth yl-acetamide (100 mg, 231.34 µmol) and (3R,5S)-4,4-difluoro-3,5-dimethyl-piperidine (304.45 mg, 1.16 mmol, TFA salt) in DMSO (3 mL) and the reaction mixture was stirred at 130°C for 3 hours. The reaction mixture was then cooled to 15°C and treated with water (8 mL) which caused a precipitate to form. The mixture was filtered and washed with water (10 mL), EtOAc (10 mL) and EtOH (20 mL), respectively. The filter cake was concentrated under reduced pressure to give the title compound as a pale brown solid (80.6 mg, 62%). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.14 (s, 1H), 7.99 (s, 1H), 7.92 (br s, 1H), 7.78 (s, 1H), 7.63 (br d, J = 8.8 Hz, 1H), 7.47 (br d, J = 9.2 Hz, 1H), 7.23 (s, 1H), 4.54 (s, 2H), 4.13 (br d, J = 13.2 Hz, 2H), 3.68 (s, 3H), 2.78 (br t, J = 12.8 Hz, 2H), 2.66 (br d, J = 4.4 Hz, 3H), 2.15-1.98 (m, 2H), 0.84 (br d, J = 6.8 Hz, 6H). [00154] Example 3: Synthesis of 2-((6-((5-cyano-4-((3S,5R)-4,4-difluoro-3-(2-hydroxyethyl)- 5-methylpiperidin-1-yl)pyrimidin-2-yl)amino)-1-methyl-2-oxo- 1,2-dihydroquinolin-3-yl)oxy)- N-methylacetamide (3) and 2-((6-((5-cyano-4-((3R,5S)-4,4-difluoro-3-(2-hydroxyethyl)-5 - methylpiperidin-1-yl)pyrimidin-2-yl)amino)-1-methyl-2-oxo-1, 2-dihydroquinolin-3-yl)oxy)-N- methylacetamide (4) [00155] Methyl 2-(1-benzyl-5-methyl-4-oxo-3-piperidyl)acetate [00156] LDA (2 M, 73.80 mL) was added dropwise to a solution of 1-benzyl-3-methyl- piperidin-4-one (30 g, 147.58 mmol) in THF (300 mL) at -78°C and the reaction was stirred at - 78°C for 30 minutes. Methyl 2-bromoacetate (33.86 g, 221.38 mmol) and HMPA (31.74 g, 177.10 mmol) were then added dropwise at -78°C and the reaction mixture was stirred at -78°C for 2.5 hours. The reaction mixture was allowed to warm to 20°C and was stirred for another 9 hours. The reaction mixture was quenched with sat. NH4Cl (100 mL), diluted with H2O (500 mL) and then extracted with EtOAc (300 mL x3). The combined organic layers were washed with brine (200 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue that was purified by column chromatography (SiO2, Petroleum ether/Ethyl acetate=1/0 to 0/1) to give the title compound as a yellow oil (8.3 g, 17%). LCMS: [M+H + ] = 276.2 [00157] Methyl 2-(1-benzyl-4,4-difluoro-5-methyl-3-piperidyl)acetate [00158] DAST (77.74 g, 482.31 mmol) was added to a solution of methyl 2-(1-benzyl-5-methyl- 4-oxo-3-piperidyl)acetate (8.3 g, 30.14 mmol) in DCM (85 mL) and the reaction mixture was stirred at 50°C for 12 hours. The reaction mixture was diluted with DCM (60 mL) and then sat. aq. NaHCO3 (200 mL) was added dropwise. The resulting mixture was stirred at 20°C for 20 minutes and then extracted with EtOAc (100 mL x3). The combined organic layers were washed with brine (50 mL), dried over Na 2 SO 4 , filtered and concentrated under reduced pressure to give a residue that was purified by column chromatography (SiO2, Petroleum ether/Ethyl acetate=1/0 to 0/1) to give the title compound as a yellow oil (3.7 g, 41%). 1 H NMR (400 MHz, CDCl3) δ 7.31- 7.21 (m, 5H), 3.64-3.60 (m, 3H), 3.57-3.54 (m, 1H), 3.42 (d, J = 13.2 Hz, 1H), 2.97-2.87 (m, 1H), 2.78-2.66 (m, 2H), 2.65-2.48 (m, 1H), 2.25-2.05 (m, 2H), 2.04-1.87 (m, 2H), 0.92 (d, J = 6.8 Hz, 3H). [00159] 2-(1-Benzyl-4,4-difluoro-5-methyl-3-piperidyl)ethanol [00160] LiAlH 4 (255.29 mg, 6.73 mmol) was added slowly to a solution of methyl 2-(1-benzyl- 4,4-difluoro-5-methyl-3-piperidyl)acetate (1 g, 3.36 mmol) in THF (10 mL) at 0°C and then the reaction mixture was stirred at 20°C for 1 hour. The reaction mixture was quenched with of sat. aq. NH 4 Cl (10 mL), diluted with H 2 O (10 mL) and then extracted with EtOAc (10 mL x3). The combined organic layers were washed with brine (10 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to give the title compound as a yellow oil (700 mg, 77%). LCMS: [M+H + ] = 270.1 [00161] 2-(4,4-Difluoro-5-methylpiperidin-3-yl)ethanol [00162] TFA (3.39 g, 29.70 mmol) and Pd/C (0.5 g, 10% purity) were added to a solution of 2- (1-benzyl-4,4-difluoro-5-methyl-3-piperidyl)ethanol (2 g, 7.43 mmol) in MeOH (20 mL) and the reaction mixture was stirred under H2 (15 psi) at 60°C for 6 hours. The reaction mixture was filtered and concentrated under reduced pressure to give the title compound as a white solid (2 g, 92%, TFA salt). 1 H NMR (400 MHz, methanol-d4) δ 3.66 (d, J = 6.4 Hz, 2H), 3.62-3.60 (m, 1H), 3.45-3.39 (m, 1H), 2.97-2.88 (m, 2H), 2.51-2.26 (m, 2H), 2.11-2.03 (m, 1H), 1.53-1.44 (m, 1H), 1.11 (d, J = 6.8 Hz, 3H). [00163] 2-Chloro-4-(4,4-difluoro-3-(2-hydroxyethyl)-5-methylpiperidi n-1-yl)pyrimidine-5- carbonitrile [00164] A mixture of 2-(4,4-difluoro-5-methyl-3-piperidyl)ethanol (1 g, 3.41 mmol, TFA salt), 2,4-dichloropyrimidine-5-carbonitrile (593.35 mg, 3.41 mmol), and DIEA (1.10 g, 8.53 mmol) in DMF (10 mL) was stirred at 50°C for 1 hour under a N2 atmosphere. The reaction mixture was concentrated under reduced pressure to give a residue that was purified by reversed- phase HPLC (neutral condition: Column: 80 g Agela C18; Mobile phase: [water-ACN]; B%: 35- 65% 25 min; 65% 5 min) to give the title compound as a yellow solid (120 mg, 11%). LCMS: [M+H + ] = 317.0. [00165] 2-Chloro-4-((3S,5R)-4,4-difluoro-3-(2-hydroxyethyl)-5-methyl piperidin-1- yl)pyrimidine-5-carbonitrile & 2-chloro-4-((3R,5S)-4,4-difluoro-3-(2-hydroxyethyl)-5- methylpiperidin-1-yl)pyrimidine-5-carbonitrile [00166] 2-Chloro-4-[4,4-difluoro-3-(2-hydroxyethyl)-5-methyl-1-piper idyl]pyrimidine-5- carbonitrile (170 mg, 536.73 µmol) was separated by SFC (column: DAICEL CHIRALCEL®OJ (250 mm*30 mm,10 µm); mobile phase: [Neu-MeOH]; B%: 10%-40%, 15 min) to give 2-chloro- 4-[(3S,5R)-4,4-difluoro-3-(2-hydroxyethyl)-5-methyl-1-piperi dyl]pyrimidine-5-carbonitrile as a yellow solid (70 mg, 41%, retention time = 1.894 min) and 2-chloro-4-[(3R,5S)-4,4-difluoro-3-(2- hydroxyethyl)-5-methyl-1-piperidyl]pyrimidine-5-carbonitrile as a yellow solid (70 mg, 40%, retention time = 2.013 min). [00167] 2-((6-((5-Cyano-4-((3S,5R)-4,4-difluoro-3-(2-hydroxyethyl)-5 -methylpiperidin-1- yl)pyrimidin-2-yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin- 3-yl)oxy)-N-methylacetamide (3) [00168] A mixture of 2-chloro-4-[(3S,5R)-4,4-difluoro-3-(2-hydroxyethyl)-5-methyl -1- piperidyl]pyrimidine-5-carbonitrile (70 mg, 221.01 µmol), 2-[(6-amino-1-methyl-2-oxo-3- quinolyl)oxy]-N-methyl-acetamide (52.49 mg, 200.91 µmol), and 4-methylbenzenesulfonic acid monohydrate (42.04 mg, 221.01 µmol) in DMF (1 mL) was stirred at 130°C for 12 hours under a N2 atmosphere. The reaction mixture was concentrated under reduced pressure to give a residue that was purified by prep-HPLC (column: Waters™ Xbridge BEH C18 100*30 mm*10 µm; mobile phase: [water(10 mM NH 4 HCO 3 )-ACN]; B%: 25%-55%, 8 min) to give the title compound as a white solid (38 mg, 34%) as a white solid. 1 H NMR (400 MHz, DMSO-d6) δ 10.06 (s, 1H), 8.49 (s, 1H), 7.93 (d, J = 4.4 Hz, 1H), 7.85 (s, 1H), 7.71 (d, J = 9.2 Hz, 1H), 7.46 (d, J = 9.2 Hz, 1H), 7.20 (s, 1H), 4.83 (d, J = 13.2 Hz, 1H), 4.62 (t, J = 5.2 Hz, 2H), 4.56 (s, 2H), 3.66 (s, 3H), 3.52 -3.47 (m, 2H), 2.96-2.87 (m, 2H), 2.66 (d, J = 4.8 Hz, 3H), 2.21-2.14 (m, 2H), 1.91-1.83 (m, 1H), 1.42-1.33 (m, 1H), 1.00 (d, J = 6.8 Hz, 3H). LCMS: [M+H + ] = 542.2. [00169] 2-((6-((5-Cyano-4-((3R,5S)-4,4-difluoro-3-(2-hydroxyethyl)-5 -methylpiperidin-1- yl)pyrimidin-2-yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin- 3-yl)oxy)-N-methylacetamide (4) A mixture of 2-chloro-4-[(3R,5S)-4,4-difluoro-3-(2-hydroxyethyl)-5-methyl -1- piperidyl]pyrimidine-5-carbonitrile (70 mg, 221.01 µmol), 2-[(6-amino-1-methyl-2-oxo-3- quinolyl)oxy]-N-methyl-acetamide (52.49 mg, 200.91 µmol), and 4-methylbenzenesulfonic acid monohydrate (45.86 mg, 241.10 µmol) in DMF (2 mL) was stirred at 130°C for 12 hours under a N2 atmosphere. The reaction mixture was concentrated under reduced pressure to give a residue that was purified by prep-HPLC (column: Waters™ Xbridge BEH C18 100*30 mm*10 µm; mobile phase: [water(10 mM NH4HCO3)-ACN]; B%: 25%-55%, 8 min) to give the title compound as a white solid (16 mg, 14%). 1 H NMR (400 MHz, DMSO-d6) δ 10.07 (s, 1H), 8.49 (s, 1H), 7.94- 7.86 (m, 2H), 7.71 (d, J = 9.2 Hz, 1H), 7.46 (d, J = 8.8 Hz, 1H), 7.20 (s, 1H), 4.83 (d, J = 11.6 Hz, 1H), 4.62 (t, J = 5.2 Hz, 2H), 4.56 (s, 2H), 3.67 (s, 3H), 3.50-3.49 (m, 2H), 2.96-2.87 (m, 2H), 2.66 (d, J = 4.4 Hz, 3H), 2.20 (s, 2H), 1.86 (s, 1H), 1.37 (s, 1H), 1.00 (d, J = 6.8 Hz, 3H). LCMS: [M+H + ] = 542.2.
[00170] Example 4: Synthesis of 2-((6-((4-(3-(2-aminoethyl)-4,4-difluoro-5-methylpiperidin-1 - yl)-5-cyanopyrimidin-2-yl)amino)-1-methyl-2-oxo-1,2-dihydroq uinolin-3-yl)oxy)-N- methylacetamide (mixture of 14 & 15) [00171] 2-[2-(1-Benzyl-4,4-difluoro-5-methyl-3-piperidyl)ethyl]isoin doline-1,3-dione [00172] PPh3 (886.20 mg, 3.38 mmol) was added to a solution of 2-(1-benzyl-4,4-difluoro-5- methyl-3-piperidyl)ethanol (700 mg, 2.60 mmol) and isoindoline-1,3-dione (458.88 mg, 3.12 mmol) in DCM (7 mL) at 0°C. A solution of DEAD (588.43 mg, 3.38 mmol) in DCM (1 mL) was then added dropwise at 0°C. The reaction mixture then was stirred at 20°C for 12 hours. The reaction mixture was concentrated under reduced pressure to give a residue that was purified by column chromatography (SiO 2 , Petroleum ether/Ethyl acetate=1/0 to 0/1) to give the title compound as a colorless oil (600 mg, 58%). LCMS: [M+H + ] = 399.1 [00173] 2-Chloro-4-(3-(2-(1,3-dioxoisoindolin-2-yl)ethyl)-4,4-difluo ro-5-methylpiperidin-1- yl)pyrimidine-5-carbonitrile [00174] A mixture of 2-[2-(4,4-difluoro-5-methyl-3-piperidyl)ethyl]isoindoline-1, 3-dione (1 g, 2.37 mmol, TFA salt), 2,4-dichloropyrimidine-5-carbonitrile (494.35 mg, 2.84 mmol), and DIEA (612.03 mg, 4.74 mmol) in DMF (10 mL) was stirred at 100°C for 1 hour under a N 2 atmosphere. The reaction mixture was concentrated under reduced pressure to give a residue that was purified by reversed-phase HPLC (neutral condition: Column: 120 g Agela C18; Mobile phase: [water- ACN]; Gradient B%: 30-60% 20 min; 60% 10 min) to give the title compound as a yellow solid (200 mg, 19%). LCMS: [M+H + ] = 446.1. [00175] 2-((6-((5-cyano-4-(3-(2-(1,3-dioxoisoindolin-2-yl)ethyl)-4,4 -difluoro-5- methylpiperidin-1-yl)pyrimidin-2-yl)amino)-1-methyl-2-oxo-1, 2-dihydroquinolin-3-yl)oxy)-N- methylacetamide [00176] A mixture of 2-chloro-4-[3-[2-(1,3-dioxoisoindolin-2-yl)ethyl]-4,4-difluo ro-5-methyl- 1-piperidyl]pyrimidine-5-carbonitrile (200 mg, 448.58 µmol), 2-[(6-amino-1-methyl-2-oxo-3- quinolyl)oxy]-N-methyl-acetamide (106.55 mg, 407.80 µmol), and DIEA (105.41 mg, 815.60 µmol) in NMP (3 mL) was stirred at 130°C for 2 hours under a N 2 atmosphere. H 2 O (5 mL) was added to the reaction mixture and the precipitated solids were filtered and washed with H2O (5 mL) and EtOAc (5 mL). The solids were dried under reduced pressure to give the title compound as a brown solid (200 mg, 64%). 1 H NMR (400 MHz, DMSO-d 6 ) δ 10.06 (s, 1H), 8.50 (s, 1H), 7.87-7.82 (m, 5H), 7.75-7.66 (m, 2H), 7.46 (d, J = 9.2 Hz, 1H), 7.17 (s, 1H), 4.83 (d, J = 12.8 Hz, 1H), 4.6 (d, J = 12.4 Hz, 1H), 4.52 (s, 2H), 3.60 (s, 3H), 3.30-3.28 (m, 2H), 2.69 (s, 3H), 2.65 (d, J = 4.4 Hz, 2H), 2.00-1.86 (m, 3H), 1.57-1.48 (m, 1H), 0.98 (d, J = 6.4 Hz, 3H). [00177] 2-((6-((4-(3-(2-Aminoethyl)-4,4-difluoro-5-methylpiperidin-1 -yl)-5-cyanopyrimidin-2- yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-met hylacetamide (mixture of 14 & 15) [00178] NH2NH2 . H2O (279.91 mg, 5.59 mmol) was added to a mixture of 2-[[6-[[5-cyano-4-[3- [2-(1,3-dioxoisoindolin-2-yl)ethyl]-4,4-difluoro-5-methyl-1- piperidyl]pyrimidin-2-yl]amino]-1- methyl-2-oxo-3-quinolyl]oxy]-N-methyl-acetamide (250 mg, 372.76 µmol) in NMP (0.5 mL) and the reaction was heated to 100°C and was stirred for 1 hour. The reaction mixture was concentrated under reduced pressure to give a residue that was purified by prep-HPLC (column: Phenomenex Luna® 80*30 mm*3 µm; mobile phase: [water(TFA)-ACN];B%: 10%-40%, 8 min) to give the title compound as a yellow solid (25 mg, 12%). 1 H NMR (400 MHz, DMSO-d6) δ 10.12 (s, 1H), 8.52 (s, 1H), 7.95 (d, J = 4.8 Hz, 1H), 7.88 (s, 1H), 7.74-7.69 (m, 3H), 7.47 (d, J = 9.2 Hz, 1H), 7.18 (s, 1H), 4.72-4.64 (m, 2H), 4.57 (s, 2H), 3.67 (s, 3H), 3.02 (d, J = 12.8 Hz, 1H), 2.91-2.84 (m, 3H), 2.66 (d, J = 4.4 Hz, 3H), 2.25-2.15 (m, 2H), 2.03-1.94 (m, 1H), 1.59-1.49 (m, 1H), 1.01 (d, J = 6.8 Hz, 3H). [00179] Example 5: Synthesis of 5-chloro-2-((3R,5S)-4,4-difluoro-3,5-dimethylpiperidin-1-yl) - 6-((1-methyl-3-((3-methyloxetan-3-yl)methoxy)-2-oxo-1,2-dihy droquinolin-6- yl)amino)nicotinonitrile (9) [00180] 3-Hydroxy-1-methyl-6-nitroquinolin-2(1H)-one [00181] Diazomethyl(trimethyl)silane (2 M, 29.10 mL) was added dropwise to a mixture of 1- methyl-5-nitro-indoline-2,3-dione (10 g, 48.51 mmol) and TEA (9.82 g, 97.01 mmol) in EtOH (300 mL) and the reaction mixture was stirred at 20°C for 12 hours. The reaction mixture was concentrated under reduced pressure and 1 N HCl (100 mL) was added and the mixture was stirred at 20°C for 2 hours. The mixture was filtered and washed with DMF/ethyl acetate (1/10, 50 mL) and the filter cake was dried under reduced pressure to give the title compound as a yellow solid (2 g, 19%). 1 H NMR (400 MHz, DMSO-d 6 ) δ 10.09 (s, 1H), 8.66 (d, J = 2.4 Hz, 1H), 8.19 (dd, J = 9.2, 2.4 Hz, 1H), 7.65 (d, J = 9.2 Hz, 1H), 7.34 (s, 1H), 3.74 (s, 3H). [00182] 1-Methyl-3-((3-methyloxetan-3-yl)methoxy)-6-nitroquinolin-2( 1H)-one [00183] A mixture of 3-hydroxy-1-methyl-6-nitro-quinolin-2-one (500 mg, 2.27 mmol), 3- (iodomethyl)-3-methyl-oxetane (577.78 mg, 2.73 mmol) and Cs2CO3 (1.48 g, 4.54 mmol) in DMF (5 mL) was stirred at 60°C for 12 hours under a N2 atmosphere. H2O (5 mL) was added and the precipitated solids were filtered and washed with H 2 O (10 mL) and EtOAc (5 mL). The solids were dried under reduced pressure to give the title compound as a brown solid (350 mg, 51%). 1 H NMR (400 MHz, DMSO-d6) δ 8.57 (d, J = 2.4 Hz, 1H), 8.24 (dd, J = 9.2, 2.4 Hz, 1H), 7.66 (d, J = 9.2 Hz, 1H), 7.65 (s, 1H), 4.50 (d, J = 6.0 Hz, 2H), 4.34 (d, J = 6.0 Hz, 2H), 4.13 (s, 2H), 3.70 (s, 3H), 1.40 (s, 3H). [00184] 6-Amino-1-methyl-3-((3-methyloxetan-3-yl)methoxy)quinolin-2( 1H)-one [00185] Pd/C (10 mg, 10% purity) was added to a solution of 1-methyl-3-[(3-methyloxetan-3- yl)methoxy]-6-nitro-quinolin-2-one (350 mg, 1.15 mmol) in DMF (0.5 mL) under a N2 atmosphere. The reaction mixture was stirred under H2 (15 Psi) at 20°C for 12 hours. The reaction mixture was filtered and concentrated under reduced pressure to give the title compound as a brown solid (250 mg, 79%). 1 H NMR (400 MHz, DMSO-d6) δ 7.18 (d, J = 9.2 Hz, 1H), 7.10 (s, 1H), 6.78 (dd, J = 8.8, 2.4 Hz, 1H), 6.72 (d, J = 2.4 Hz, 1H), 5.03 (s, 2H), 4.49 (d, J = 5.6 Hz, 2H), 4.31 (d, J =6.0 Hz, 2H), 4.06 (s, 2H), 3.56 (s, 3H), 1.38 (s, 3H). [00186] 2,5-Dichloro-6-((1-methyl-3-((3-methyloxetan-3-yl)methoxy)-2 -oxo-1,2- dihydroquinolin-6-yl)amino)nicotinonitrile [00187] A mixture of 6-amino-1-methyl-3-[(3-methyloxetan-3-yl)methoxy]quinolin-2- one (250 mg, 911.36 µmol), 2,5,6-trichloropyridine-3-carbonitrile (207.96 mg, 1.00 mmol), and DIEA (235.57 mg, 1.82 mmol) in DMF (3 mL) was stirred at 100°C for 4 hours under a N2 atmosphere. H2O (3 mL) was added and the precipitated solids were filtered and washed with H2O (3 mL) and EtOAc (5 mL). The solids were dried under reduced pressure to give the title compound as a brown solid (300 mg, 74%). 1 H NMR (400 MHz, DMSO-d6) δ 9.42 (s, 1H), 8.29 (s, 1H), 7.78 (s, 1H), 7.65 (d, J = 8.8 Hz, 1H), 7.49 (d, J = 9.2 Hz, 1H), 7.27 (s, 1H), 4.55 (d, J = 5.6 Hz, 2H), 4.33 (d, J = 6.0 Hz, 2H), 4.16 (s, 2H), 3.68 (s, 3H), 1.42 (s, 3H). [00188] 5-Chloro-2-((3R,5S)-4,4-difluoro-3,5-dimethylpiperidin-1-yl) -6-((1-methyl-3-((3- methyloxetan-3-yl)methoxy)-2-oxo-1,2-dihydroquinolin-6-yl)am ino)nicotinonitrile (9) [00189] A mixture of 2,5-dichloro-6-[[1-methyl-3-[(3-methyloxetan-3-yl)methoxy]-2 -oxo-6- quinolyl]amino]pyridine-3-carbonitrile (100 mg, 224.57 µmol), (3S,5R)-4,4-difluoro-3,5- dimethyl-piperidine (76.84 mg, 291.94 µmol, TFA salt), and DIEA (72.56 mg, 561.42 µmol) in DMSO (1 mL) was stirred at 130°C for 3 hours under a N2 atmosphere. The reaction mixture was concentrated under reduced pressure to give a residue that was purified by prep-HPLC (column: Phenomenex C1880*40 mm*3 µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 35%- 65%, 8min) to give the title compound as a yellow solid (40 mg). 1 H NMR (400 MHz, DMSO-d6) δ 9.16 (s, 1H), 8.0 (s, 1H), 7.84 (d, J = 2.4 Hz, 1H), 7.59 (dd, J = 9.2, 2.4 Hz, 1H), 7.46 (d, J = 9.2 Hz, 1H), 7.29 (s, 1H), 4.48 (d, J = 6.0 Hz, 2H), 4.33 (d, J = 6.0 Hz, 2H), 4.13 (d, J = 12.8 Hz, 2H), 4.09 (s, 2H), 3.66 (s, 3H), 2.78 (t, J = 12.8 Hz, 2H), 2.11-2.04 (m, 2H), 1.39 (s, 3H), 0.85 (t, J = 6.8 Hz, 6H). [00190] Example 6: Synthesis of 2-((3S,5R)-3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5- chloro-6-((3-(3-hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-di hydro-1H-benzo[d]imidazol-5- yl)amino)nicotinonitrile (48) and 2-((3R,5S)-3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5- chloro-6-((3-(3-hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-di hydro-1H-benzo[d]imidazol-5- yl)amino)nicotinonitrile (49)
[00191] tert-Butyl 3-(1,3-dioxoisoindolin-2-yl)-4-oxopiperidine-1-carboxylate [00192] A mixture of tert-butyl 3-bromo-4-oxo-piperidine-1-carboxylate (100 g, 359.53 mmol) and (1,3-dioxoisoindolin-2-yl) potassium (73.25 g, 395.48 mmol) in DMF (800 mL) was stirred at 20°C for 2 hr. The mixture was added slowly to water (2.5 L), forming a precipitate which was filtered and the filter cake was washed with water (500 mL) and dried in vacuo to give the title compound as a white solid (80 g, 59% yield, 91% purity). 1 H NMR (400 MHz, DMSO-d6) δ = 7.97 - 7.82 (m, 4H), 4.88 (dd, J = 7.2, 11.6 Hz, 1H), 4.41 - 4.11 (m, 2H), 3.76 - 3.51 (m, 1H), 3.29 - 3.16 (m, 1H), 2.85 - 2.71 (m, 1H), 2.47 (t, J = 3.0 Hz, 1H), 1.47 - 1.43 (s, 9H). [00193] tert-Butyl 3-(1,3-dioxoisoindolin-2-yl)-5-methyl-4-oxopiperidine-1-carb oxylate [00194] To a solution of tert-butyl 3-(1,3-dioxoisoindolin-2-yl)-4-oxo-piperidine-1-carboxylate (25 g, 72.60 mmol) in THF (250 mL) was added LDA (2 M, 43.56 mL) dropwise at -70°C, and the mixture was stirred at -70°C for 45 min, then HMPA (15.61 g, 87.12 mmol, 15.31 mL) was added dropwise and stirred for another 30 min. Finally, iodomethane (15.46 g, 108.90 mmol, 6.78 mL) was added dropwise at -70°C and the resulting mixture was stirred at 20°C for 11 hr. The reaction mixture was quenched by addition of sat. NH 4 Cl aq. (400 mL), and then it was extracted with DCM (500 mL x3). The combined organic layers were dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue which was purified by flash silica gel chromatography (Silica Flash Column, Eluent of 25~50% Ethyl acetate/Petroleum ether gradient) to give compound the title compound as a pink solid (4.3 g, 7% yield, 87% purity). 1 H NMR (400 MHz, CDCl3) δ = 7.90 - 7.83 (m, 2H), 7.77 – 7.74 (m, 2H), 4.86 (dd, J = 7.2, 11.2 Hz, 1H), 4.65 - 4.29 (m, 2H), 3.97 - 3.81 (m, 1H), 2.90 (s, 1H), 2.67 (s, 1H), 1.52 (s, 9H), 1.13 (d, J = 6.8 Hz, 3H). [00195] 2-(5-Methyl-4-oxopiperidin-3-yl)isoindoline-1,3-dione [00196] A mixture of tert-butyl 3-(1,3-dioxoisoindolin-2-yl)-5-methyl-4-oxo-piperidine-1- carboxylate (4.3 g, 12.00 mmol) in HCl/EtOAc (4 M, 21.50 mL) was stirred at 20°C for 1 hr. The reaction mixture was concentrated under reduced pressure to give the title compound as a white solid (3.5 g, crude, HCl). [00197] 2-(1-Benzyl-5-methyl-4-oxopiperidin-3-yl)isoindoline-1,3-dio ne [00198] A mixture of 2-(5-methyl-4-oxo-3-piperidyl)isoindoline-1,3-dione (3.5 g, 9.50 mmol, 80% purity, HCl), benzaldehyde (1.21 g, 11.40 mmol, 1.15 mL) and AcOH (285.25 mg, 4.75 mmol, 271.67 µL) in DMF (35 mL) was stirred at 20°C for 2 hr, then sodium triacetoxyborohydride (4.03 g, 19.00 mmol, 2 eq) was added to the mixture, and the reaction mixture was stirred at 20°C for 10 hr. The reaction mixture was treated with water (50 mL), forming a precipitate which was filtered and the solid was collected and dried in vacuo. The crude product was triturated with (PE:EtOAc=15:1, 60 mL) at 20°C for 30 min to give the title compound as a white solid (3 g, 75% yield, 83% purity). 1 H NMR (400 MHz, CDCl3) δ = 7.76 - 7.70 (m, 2H), 7.65 - 7.59 (m, 2H), 7.29 - 7.16 (m, 5H), 5.01 - 4.92 (m, 1H), 3.69 - 3.54 (m, 2H), 3.21 - 3.04 (m, 3H), 2.76 - 2.64 (m, 1H), 2.34 - 2.26 (m, 1H), 0.98 (d, J = 6.8 Hz, 3H). [00199] 2-(1-Benzyl-4,4-difluoro-5-methylpiperidin-3-yl)isoindoline- 1,3-dione [00200] To a solution of 2-(1-benzyl-5-methyl-4-oxo-3-piperidyl)isoindoline-1,3-dione (3 g, 8.61 mmol) in DCM (30 mL) was added DAST (20.82 g, 129.16 mmol, 17.07 mL) in one portion, and then the reaction mixture was stirred at 50°C for 12 h. The reaction mixture was diluted with DCM (50 mL), then sat. NaHCO 3 aq. (200 mL) was added to the stirring mixture. The organic phase was separated and the aqueous phase was extracted with EtOAc (100 mL x3). The combined organic phase was washed with brine (150 mL), dried with anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo and purified by flash silica gel chromatography (Silica Flash Column, Eluent of 5~30% Ethyl acetate/Petroleum ether gradient) to give the title compound as a white solid (2 g, 3.78 mmol, 44% yield, 70% purity). 1 H NMR (400 MHz, CDCl3) δ = 7.81 - 7.74 (m, 2H), 7.69 - 7.62 (m, 2H), 7.27 - 7.15 (m, 5H), 4.71 - 4.55 (m, 1H), 3.67 - 3.59 (m, 1H), 3.55 - 3.46 (m, 2H), 2.85 - 2.76 (m, 2H), 2.35 - 2.15 (m, 2H), 0.97 (d, J = 6.4 Hz, 3H). [00201] 2-(4,4-Difluoro-5-methylpiperidin-3-yl)isoindoline-1,3-dione [00202] To a mixture of 2-(1-benzyl-4,4-difluoro-5-methyl-3-piperidyl)isoindoline-1, 3-dione (2 g, 5.40 mmol) in H 2 O (20 mL) and ACN (80 mL) was added CAN (29.60 g, 54.00 mmol, 26.91 mL), and the reaction mixture was stirred at 40°C for 12 hr. The reaction mixture was treated with sat.K 2 CO 3 aq. (50 mL), forming a precipitate which was filtered, and the filter cake was washed with EtOAc (80 mL). The filtrate was extracted with EtOAc (100 mL x3), and the combined organic phase was washed with brine (150 mL), dried with anhydrous Na2SO4, filtered and the filtrate was concentrated in vacuo. The residue was purified by flash silica gel chromatography (Silica Flash Column, Eluent of 80~100% Ethyl acetate/Petroleum ether gradient). Then it was further purified by prep-HPLC (column: Waters Xbridge Prep OBD C18 150*40mm*10µm;mobile phase: [water(NH 3 H 2 O+NH 4 HCO 3 )-ACN];B%: 20%-50%,8min) to give the title compound as a yellow solid (550 mg, 1.95 mmol, 36% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d6) δ = 7.94 - 7.83 (m, 4H), 4.50 - 4.34 (m, 1H), 3.72 (t, J = 12.4 Hz, 1H), 3.15 - 3.03 (m, 1H), 2.98 - 2.88 (m, 1H), 2.54 (s, 1H), 2.41 - 2.31 (m, 1H), 2.22 - 2.01 (m, 1H), 0.90 (d, J = 6.4 Hz, 3H). [00203] 2-((3S,5R)-4,4-Difluoro-5-methylpiperidin-3-yl)isoindoline-1 ,3-dione and 2-((3R,5S)- 4,4-difluoro-5-methylpiperidin-3-yl)isoindoline-1,3-dione [00204] 2-(4,4-Difluoro-5-methyl-3-piperidyl)isoindoline-1,3-dione (550 mg) was separated by SFC (column: DAICEL CHIRALPAK IG (250mm*50mm,10µm);mobile phase: [0.1%NH3H2O ETOH];B%: 40%-40%,3.8min) to give 2-[(3S,5R)-4,4-difluoro-5-methyl-3- piperidyl]isoindoline-1,3-dione as a white solid (200 mg, 520.93 µmol, 27% yield) and 2-[(3R,5S)- 4,4-difluoro-5-methyl-3-piperidyl]isoindoline-1,3-dione as a white solid (190 mg, 460.99 µmol, 23% yield). [00205] Intermediate 1: 1 H NMR (400 MHz, DMSO-d 6 ) δ = 7.95 - 7.81 (m, 4H), 4.52 - 4.32 (m, 1H), 3.73 (t, J = 12.4 Hz, 1H), 3.14 - 3.03 (m, 1H), 2.96 – 2.90 (m, 1H), 2.58 (s, 1H), 2.36 (t, J = 12.6 Hz, 1H), 2.20 - 2.03 (m, 1H), 0.90 (d, J = 6.8 Hz, 3H). [00206] Intermediate 2: 1 H NMR (400 MHz, DMSO-d6) δ = 7.93 - 7.82 (m, 4H), 4.55 - 4.30 (m, 1H), 3.73 (t, J = 12.4 Hz, 1H), 3.14 - 3.04 (m, 1H), 2.96 – 2.91 (m, 1H), 2.70 (s, 1H), 2.36 (t, J = 12.0 Hz, 1H), 2.21 - 2.02 (m, 1H), 0.91 (d, J = 6.8 Hz, 3H). [00207] 3-Hydroxy-3-methylbutyl 4-methylbenzenesulfonate [00208] To a mixture of 3-methylbutane-1,3-diol (50 g, 480.09 mmol, 51.23 mL) in DCM (1 L) was added DMAP (5.87 g, 48.01 mmol) and TEA (97.16 g, 960.18 mmol, 133.64 mL) at 15°C under a nitrogen atmosphere. 4-Methylbenzenesulfonyl chloride (91.53 g, 480.09 mmol) was added at 0°C slowly. The reaction was stirred at 15°C for 12 hours, then poured into sat. aq. NaHCO 3 (1000 mL). The biphasic layers were separated and the aqueous layer extracted with DCM (2000 mL). The combined organic layers were washed with brine (1500 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The residue was purified by column chromatography (silica gel, eluted with petroleum ether/ethyl acetate=10/1 to 2/1) to give the title compound as a colorless oil (250 g, 953.23 mmol, 99% yield, 98% purity), which was used without further purification. 1 H NMR (400 MHz, CDCl3) δ ppm 7.75 - 7.80 (m, 2 H), 7.34 (d, J = 7.99 Hz, 2 H), 4.19 (t, J = 6.91 Hz, 2 H), 2.44 (s, 3 H), 1.84 (t, J = 6.85 Hz, 2 H), 1.68 (s, 1 H), 1.20 (s, 6 H). [00209] 1-Methyl-5-nitro-1H-benzo[d]imidazol-2(3H)-one [00210] A mixture of N-1-methyl-4-nitrobenzene-1,2-diamine (50 g, 299.11 mmol) and di(imidazol-1-yl)methanone (48.50 g, 299.11 mmol) in DMF (500 mL) was stirred at 15°C for 12 hours. The resulting suspension was filtered and the filter cake was washed by EtOAc (100 mL) and concentrated under reduced pressure to give the crude title compound as a red solid (92 g, 468.15 mmol, 78% yield, 98% purity), which was used without further purification. 1 H NMR (400 MHz, DMSO-d 6 ) δ 11.38 (br s, 1 H), 7.99 (dd, J = 8.70, 2.15 Hz, 1 H), 7.71 (d, J = 2.03 Hz, 1 H), 7.26 (d, J = 8.70 Hz, 1 H), 3.34 (s, 3 H). [00211] 3-(3-Hydroxy-3-methylbutyl)-1-methyl-5-nitro-1H-benzo[d]imid azol-2(3H)-one [00212] To a mixture of 3-hydroxy-3-methylbutyl 4-methylbenzenesulfonate (24.07 g, 93.19 mmol) and 1-methyl-5-nitro-1H-benzo[d]imidazol-2(3H)-one (15 g, 77.66 mmol) in DMSO (400 mL) was added Cs2CO3 (50.60 g, 155.31 mmol) in one portion under a nitrogen atmosphere. The mixture was stirred at 100°C for 12 hours. (3-Hydroxy-3-methyl-butyl) 4-methylbenzenesulfonate (6.02 g, 23.30 mmol) was added. The mixture was stirred at 100°C for 12 hours. Then water (600 mL) was added and the biphasic mixture was extracted with ethyl acetate (500 mL x2). The combined organic phases was dried with anhydrous Na2SO4, filtered and concentrated to give the crude title compound as a black oil (46 g, 154.92 mmol, 99% yield, 94% purity), which was used without further purification. 1 H NMR (400 MHz, DMSO-d6) δ 8.02 (dd, J = 8.70, 2.15 Hz, 1 H), 7.96 (d, J = 2.15 Hz, 1 H), 7.32 (d, J = 8.70 Hz, 1 H), 4.52 (s, 1 H), 3.91 - 4.00 (m, 2 H), 3.38 (s, 3 H), 1.67 - 1.75 (m, 2 H), 1.16 (s, 6 H). M+H + = 280.0. [00213] 5-Amino-3-(3-hydroxy-3-methylbutyl)-1-methyl-1H-benzo[d]imid azol-2(3H)-one [00214] To a solution of 3-(3-hydroxy-3-methylbutyl)-1-methyl-5-nitro-1H-benzo[d]imid azol- 2(3H)-one (15 g, 53.71 mmol) in DMF (200 mL) was added Pd/C (10 g, 10%) under an argon atmosphere. The suspension was degassed under vacuum and purged with H 2 several times. The mixture was stirred under H 2 (50 psi) at 50°C for 96 hours. The reaction mixture was filtered and the filtrate was concentrated under reduced pressure. The residue was purified by column chromatography (silica gel, eluted with DCM: MeOH = 20:1 to 5:1) to give the title compound as a pink solid (13 g, 51.44 mmol, 96% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 6.78 (d, J = 8.31 Hz, 1 H), 6.37 (d, J = 1.83 Hz, 1 H), 6.30 (dd, J = 8.25, 1.90 Hz, 1 H), 4.79 (s, 2 H), 4.45 (s, 1 H), 3.73 - 3.83 (m, 2 H), 3.21 (s, 3 H), 1.59 - 1.72 (m, 2 H), 1.16 (s, 6 H). M+H + = 250.1. [00215] 2,5-Dichloro-6-((3-(3-hydroxy-3-methylbutyl)-1-methyl-2-oxo- 2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile [00216] To a mixture of 5-amino-3-(3-hydroxy-3-methyl-butyl)-1-methyl-benzimidazol-2 -one (3 g, 12.03 mmol) and 2,5,6-trichloropyridine-3-carbonitrile (2.50 g, 12.03 mmol) in DMSO (30 mL) was added DIEA (3.11 g, 24.07 mmol, 4.19 mL) in one portion under N 2 .The mixture was stirred at 100°C for 12 hours. The mixture was added water (20 mL), the precipitated solid was filtered and washed with H2O (30 mL) and ethyl acetate (20mL), then the solid was dried under reduced pressure to give the title compound as a black solid (4 g, 6.53 mmol, 54% yield, 69% purity). 1 H NMR (400 MHz, DMSO-d6) δ ppm 9.50 (s, 1 H), 8.28 (s, 1 H), 7.35 (m, 1 H), 7.20 (dd, J = 8.44, 1.59 Hz, 1 H), 7.11 (m, 1 H), 4.44 (s, 1 H), 3.87 (m, 2 H), 2.54 (s, 3 H), 1.72 (m, 2 H), 1.17 (s, 6 H). [00217] 5-Chloro-2-(3-(1,3-dioxoisoindolin-2-yl)-4,4-difluoro-5-meth ylpiperidin-1-yl)-6-((3- (3-hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benz o[d]imidazol-5- yl)amino)nicotinonitrile [00218] To a mixture of 2,5-dichloro-6-[[3-(3-hydroxy-3-methyl-butyl)-1-methyl-2-oxo - benzimidazol-5-yl]amino]pyridine-3-carbonitrile (1.5 g, 3.57 mmol) and 2-(4,4-difluoro-5- methyl-3-piperidyl) isoindoline-1,3-dione (1.10 g, 3.93 mmol) in DMSO (15 mL) was added DIEA (922.52 mg, 7.14 mmol, 1.24 mL) in one portion under N 2 . The mixture was stirred at 100°C for 12 hours. The mixture was cooled to 15°C and poured into water (30 mL).The aqueous phase was extracted with ethyl acetate (20 mL x3). The combined organic phase was washed with brine (50 mL), dried with anhydrous Na 2 SO 4 , filtered and concentrated in vacuo to give the title compound as a yellow solid (2.25g, 2.35mmol, 66% yield, 69% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.13 (s, 1 H), 8.01 (s, 1 H), 7.45 - 7.95 (m, 4 H), 7.11 - 7.20 (m, 1 H), 7.00 - 7.08 (m, 1 H), 6.81 (d, J = 8.34 Hz, 1 H), 4.12 - 4.54 (m, 4 H), 3.83 - 3.93 (m, 1 H), 3.58 - 3.77 (m, 1 H), 3.07 - 3.25 (m, 1 H), 2.82 (s, 2 H), 2.54 (s, 3 H), 2.08 - 2.28 (m, 1 H), 1.67 - 1.76 (m, 1 H), 1.05 - 1.21 (m, 6 H), 0.80 - 1.02 (m, 3 H). [00219] 2-(3-Amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-chloro-6-( (3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile [00220] To a mixture of 5-chloro-2-[3-(1,3-dioxoisoindolin-2-yl)-4,4-difluoro-5-meth yl-1- piperidyl]-6-[[3-(3-hydroxy-3-methyl-butyl)-1-methyl-2-oxo-b enzimidazol-5-yl]amino]pyridine- 3-carbonitrile (2.25 g, 3.39 mmol) in EtOH (25 mL) was added N 2 H 4 . H 2 O (2.99 g, 50.82 mmol, 2.91 mL, 85% purity) in one portion under N2. The mixture was stirred at 60°C for 1 hour. The reaction mixture was concentrated under reduced pressure. The residue was purified by prep- HPLC (neutral condition; column: Welch Xtimate C18250*70mm#10µm;mobile phase: [water (NH4HCO3)-ACN];B%: 25%-60%,20min) to give the title compound as a yellow solid (1.5 g, 83% yield, 88% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.13 (s, 1 H), 8.01 (s, 1 H), 7.45 - 7.95 (m, 4 H), 7.11 - 7.20 (m, 1 H), 7.00 - 7.08 (m, 1 H), 6.81 (d, J = 8.34 Hz, 1 H), 4.12 - 4.54 (m, 4 H), 3.83 - 3.93 (m, 1 H), 3.58 - 3.77 (m, 1 H), 3.07 - 3.25 (m, 1 H), 2.82 (s, 2 H), 2.54 (s, 3 H), 2.08 - 2.28 (m, 1 H), 1.67 - 1.76 (m, 1 H), 1.05 - 1.21 (m, 6 H), 0.80 - 1.02 (m, 3 H). [00221] 2-((3R,5S)-3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-ch loro-6-((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile and 2- ((3S,5R)-3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-chlo ro-6-((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile [00222] The mixture of 2-(3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-chloro-6-( (3-(3- hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d ]imidazol-5- yl)amino)nicotinonitrile was separated by SFC (condition: column: DAICEL CHIRALCEL OJ(250mm*50mm,10µm); mobile phase: [0.1%NH3H2O MEOH];B%: 20%-20%,5.3min) to give 2-((3R,5S)-3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-ch loro-6-((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile as a white solid and 2-((3S,5R)-3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-ch loro-6-((3-(3- hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d ]imidazol-5- yl)amino)nicotinonitrile as a white solid. [00223] 2-((3S,5R)-3-Amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-ch loro-6-((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile (48): 1 H NMR (400 MHz, DMSO-d 6 ) δ ppm 9.00 (s, 1 H), 7.95 (s, 1 H), 7.29 (d, J = 1.63 Hz, 1 H), 7.22 (dd, J = 8.32, 1.81 Hz, 1 H), 7.11 (d, J = 8.38 Hz, 1 H), 4.47 (s, 1 H), 4.10 - 4.25 (m, 1 H), 3.93 - 4.02 (m, 1 H), 3.84 - 3.93 (m, 2 H), 2.58 - 2.94 (m, 3 H), 1.92 - 2.12 (m, 1 H), 1.61 - 1.76 (m, 4 H), 1.15 (s, 6 H), 0.78 (d, J = 6.75 Hz, 3 H). [00224] 2-((3R,5S)-3-Amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-ch loro-6-((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile (49): 1 H NMR (400 MHz, DMSO-d6) δ 9.00 (s, 1 H), 7.95 (s, 1 H), 7.29 (d, J = 1.75 Hz, 1 H), 7.22 (dd, J = 8.38, 1.75 Hz, 1 H), 7.11 (d, J = 8.38 Hz, 1 H), 4.47 (s, 1 H), 4.11 - 4.25 (m, 1 H), 3.78 - 4.04 (m, 3 H), 2.75 - 2.95 (m, 2 H), 2.68 (br t, J = 12.69 Hz, 1 H), 1.88 - 2.13 (m, 1 H), 1.50 - 1.80 (m, 4 H), 1.15 (s, 6 H), 0.78 (d, J = 6.75 Hz, 3 H). [00225] The absolute configurations of compounds 48 & 49 were randomly assigned based on the amino group and methyl group being in cis-conformation. [00226] Example 7: Synthesis of 5-chloro-2-[(3S,4R,5R)-4-fluoro-3-hydroxy-5-methyl-1- piperidyl]-6-[[3-(3-hydroxy-3-methyl-butyl)-1-methyl-2-oxo-b enzimidazol-5-yl]amino]pyridine- 3-carbonitrile (50) and 5-chloro-2-[(3R,4S,5S)-4-fluoro-3-hydroxy-5-methyl-1-piperid yl]-6-[[3- (3-hydroxy-3-methyl-butyl)-1-methyl-2-oxo-benzimidazol-5-yl] amino]pyridine-3-carbonitrile (51) [00227] 1-Benzyl-3-methyl-1,2,3,6-tetrahydropyridin-4-yl trifluoromethanesulfonate [00228] To a solution of 1-benzyl-3-methyl-piperidin-4-one (50 g, 245.97 mmol) in THF (500 mL) was added LiHMDS (1 M, 295.16 mL) (1M in THF) dropwise at -65°C. After addition, the mixture was stirred at -65°C for 1 hr, then 1,1,1-trifluoro-N-phenyl-N- (trifluoromethylsulfonyl)methanesulfonamide (96.66 g, 270.56 mmol) in THF (400 mL) was added dropwise at -65°C. The resulting mixture was stirred at 15°C for 3 hr. The mixture (combined with another batch of same scale) was quenched with sat. NH4Cl (800 mL) slowly and added water (800 mL). The mixture was extracted with ethyl acetate (800 mL x3). The combined organic phase was dried with anhydrous Na2SO4, filtered and concentrated to give the residue. The residue was purified by silica gel column chromatography (silica gel, Petroleum ether/Ethyl acetate = 1/0, 20/1) to get 180 g crude product. The crude product was dissolved in ethyl acetate (1 L), then water (1 L) was added to the mixture, followed by the addition of 1N HCl until pH=3. A white precipitate formed and the mixture was filtered to get the filter cake. Water (1 L) was added to the filter cake, and then sat. Na2CO3 was added until pH=8. The mixture was extracted with ethyl acetate (1 L x3). The combined organic phase was dried with anhydrous Na 2 SO 4 , filtered and concentrated to give the title compound as a yellow oil (140 g, 93% purity). 1 H NMR (400 MHz, CDCl3) δ ppm 7.33 - 7.36 (m, 4 H), 7.27 - 7.32 (m, 1 H), 5.69 - 5.74 (m, 1 H), 3.57 - 3.67 (m, 2 H), 3.06 - 3.18 (m, 2 H), 2.79 (dd, J= 11.31, 4.95 Hz, 1 H), 2.62 - 2.72 (m, 1 H), 2.37 (dd, J = 11.37, 5.87 Hz, 1 H), 1.16 (d, J = 6.85 Hz, 3 H). [00229] 1-Benzyl-3-methyl-1,2,3,6-tetrahydropyridine [00230] A mixture of 1-benzyl-3-methyl-1,2,3,6-tetrahydropyridin-4-yl trifluoromethanesulfonate (30 g, 89.46 mmol), Pd(OAc) 2 (401.69 mg, 1.79 mmol), PPh 3 (938.58 mg, 3.58 mmol) and TEA (27.16 g, 268.38 mmol, 37.36 mL) in DMF (300 mL) was stirred at 60°C for 10 min under N2, then formic acid (4.12 g, 89.46 mmol, 3.37 mL) was added to the mixture in one portion. The mixture was stirred at 60°C for 50 min under N 2 atmosphere. Water (2L) was added to the mixture (combined with other 3 batches of same scale) followed by extraction with ethyl acetate (3 x 800 mL). The combined organic phase was washed with brine (1 L), dried with anhydrous Na 2 SO 4 , filtered and concentrated in vacuo. The residue was purified by column chromatography (silica gel, Petroleum ether/Ethyl acetate = 1/0 to 20/1) to give the title compound as a yellow oil (32 g, 148.65 mmol, 42% yield, 87% purity). 1 H NMR (400 MHz, CDCl 3 ) δ ppm 7.30 - 7.39 (m, 4 H), 7.27 (s, 2 H), 7.23 - 7.26 (m, 1 H), 5.59 - 5.68 (m, 2 H), 3.52 - 3.66 (m, 2 H), 3.02 - 3.14 (m, 1 H), 2.74 - 2.88 (m, 2 H), 2.37 - 2.48 (m, 1 H), 1.98 (dd, J = 10.94, 8.13 Hz, 1 H), 0.96 (d, J = 7.09 Hz, 3 H). [00231] 3-Benzyl-5-methyl-7-oxa-3-azabicyclo[4.1.0]heptane [00232] To a solution of H 2 O 2 (15.14 g, 133.49 mmol, 12.83 mL, 30% purity) in DCM (150 mL) was added a solution of trifluoroacetic anhydride (TFAA) (84.11 g, 400.47 mmol, 55.70 mL) in DCM (50 mL) dropwise at 0°C, the resulting suspension was stirred for 2 hr at 0°C. Meanwhile TFA (3.04 g, 26.70 mmol, 1.98 mL) was added dropwise into a solution of 1- benzyl-3-methyl-1,2,3,6-tetrahydropyridine (5 g, 26.70 mmol) in DCM (100 ml) at 0°C and stirred for 2 hr. Cold TFA/piperidine solution was added into the H2O2/TFAA solution dropwise and stirred for 1 hr at 0°C. The mixture was washed with saturated sodium sulfite solution (300 mL) slowly under N 2 at 0°C, then sat. NaHCO 3 was used to adjust the system pH=8. The mixture was extracted with DCM (3 x 200 mL). The wet starch potassium iodide paper was used to detect the peroxide, and the combined organic phase was dried with anhydrous Na2SO4, filtered and concentrated in vacuo. The residue was purified by silica gel column chromatography (silica gel, Petroleum ether/Ethyl acetate = 1/0, 10/1) to give the title compound a yellow oil (2.9 g, 13.12 mmol, 49% yield, 92% purity). 1 H NMR (400 MHz, CDCl3) δ ppm 7.30 - 7.33 (m, 4 H), 7.22 - 7.27 (m, 1 H), 3.47 (s, 2 H), 3.22 (t, J = 3.70 Hz, 1 H), 2.97 (d, J = 3.93 Hz, 1 H), 2.84 - 2.92 (m, 1 H), 2.76 - 2.83 (m, 1 H), 2.46 (dd, J = 11.50, 4.71 Hz, 1 H), 2.20 (t, J = 6.44 Hz, 1 H), 1.88 (dd, J = 11.44, 6.08 Hz, 1 H), 1.10 (d, J = 7.15 Hz, 3 H). [00233] (3R,4R,5R)-1-Benzyl-4-fluoro-5-methylpiperidin-3-ol [00234] To a solution of 3-benzyl-5-methyl-7-oxa-3-azabicyclo[4.1.0]heptane (2.9 g, 14.27 mmol) in DCM (45 mL) was added ethoxyethane;trifluoroborane;hydrofluoride (9.24 g, 28.53 mmol, 7.83 mL, 50% purity) in one portion at 15°C under N2. The mixture was stirred at 15°C for 10 min. Sat. NaHCO 3 (20 mL) was added to the mixture. The mixture was extracted with DCM (3 x 15 mL). The combined organic phase was dried with anhydrous Na2SO4, filtered and concentrated to give the residue. The residue was purified by column chromatography (silica gel, Petroleum ether/Ethyl acetate = 1/0 to 5/1) to give the title compound as a yellow solid (2 g, 8.51 mmol, 60% yield, 95% purity). 1 H NMR (400 MHz, CDCl3) δ ppm 7.27 - 7.38 (m, 5 H), 4.35 - 4.52 (m, 1 H), 3.87 (br s, 1 H), 3.54 (s, 2 H), 2.81 - 3.01 (m, 1 H), 2.74 (br d, J = 10.37 Hz, 1 H), 2.48 - 2.59 (m, 2 H), 1.99 - 2.25 (m, 2 H), 0.99 (d, J = 6.79 Hz, 3 H). [00235] (4R,5R)-1-Benzyl-4-fluoro-5-methylpiperidin-3-one [00236] To a solution of (COCl) 2 (1.71 g, 13.44 mmol, 1.18 mL) in DCM (50 mL) was added DMSO (2.10 g, 26.87 mmol, 2.10 mL) in DCM (5 mL) dropwise at -65°C. After stirring at -65°C for 15 mins a solution of (3R,4R,5R)-1-benzyl-4-fluoro-5-methyl-piperidin-3-ol (2 g, 8.96 mmol, 1 eq) in DCM (20 mL) was added dropwise, slowly at -65°C. The mixture was stirred at -65°C for further 15 mins, and TEA (4.53 g, 44.79 mmol, 6.23 mL) was added to the mixture. After addition, the mixture was stirred at 15°C for 0.5 h. Water (150 mL) was added slowly at 0°C and the mixture was extracted with DCM (3 x 100 mL). The combined organic phase was dried with anhydrous Na2SO4, filtered and concentrated to give the title compound as a yellow oil (2 g, 5.69 mmol, 64% yield, 63% purity) (in 20 mL THF). [00237] (3S,4R,5R)-1-Benzyl-4-fluoro-5-methylpiperidin-3-ol [00238] To a solution of (4R,5R)-1-benzyl-4-fluoro-5-methylpiperidin-3-one (1 g, 4.52 mmol) in EtOH (10 mL) and THF (10 mL) was added NaBH4 (205.17 mg, 5.42 mmol) at 0°C under N2. The mixture was stirred at 0°C for 1 hr. The reaction was quenched with cold water (50 mL) and extracted with ethyl acetate (50 mL x3). The organic layer was collected, washed with water, brine, dried over Na2SO4 and concentrated in vacuo. The residue was purified by flash silica gel column chromatography (ISCO®; 20 g SepaFlash® Silica Flash Column, Eluent of 0~25% Ethyl acetate/Petroleum ether gradient @ 120 mL/min) to give 500 mg of crude product. The crude product was purified by prep-HPLC (column: Phenomenex C1875*30mm*3µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 25%-45%, 8min) to give the title compound as a white solid (400 mg, 1.68 mmol, 37% yield, 94% purity). 1 H NMR (400 MHz, CDCl 3 ) δ ppm 7.24 - 7.36 (m, 5 H), 4.50 - 4.71 (m, 1 H), 3.70 - 3.84 (m, 1 H), 3.55 (d, J = 1.71 Hz, 2 H), 2.90 (br dd, J = 10.39, 5.01 Hz, 1 H), 2.49 - 2.59 (m, 1 H), 2.07 - 2.18 (m, 1 H), 1.81 - 2.03 (m, 3 H), 1.02 (d, J = 6.72 Hz, 3 H). [00239] (3S,4R,5R)-4-Fluoro-5-methylpiperidin-3-ol [00240] To a mixture of Pd/C (0.2 g, 10% purity) in THF (20 mL) was added (3S,4R,5R)-1- benzyl-4-fluoro-5-methylpiperidin-3-ol (400 mg, 1.79 mmol) and TFA (612.79 mg, 5.37 mmol, 397.92 µL) under Ar. The mixture was stirred at 15°C for 10 hr under H 2 (15 psi). The mixture was filtered and the filtrate was concentrated in vacuo without further purification to give the title compound as a white solid (450 mg, crude, TFA). 1 H NMR (400 MHz, DMSO-d6) δ ppm 4.52 - 4.76 (m, 1 H), 3.70 - 3.91 (m, 1 H), 3.02 - 3.21 (m, 2 H), 2.70 - 2.86 (m, 1 H), 2.59 (q, J = 12.15 Hz, 1 H), 1.94 - 2.11 (m, 1 H), 0.95 - 1.01 (m, 3 H). [00241] 5-Chloro-2-((3S,4R,5R)-4-fluoro-3-hydroxy-5-methylpiperidin- 1-yl)-6-((3-(3-hydroxy- 3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazo l-5-yl)amino)nicotinonitrile [00242] To a solution of 2,5-dichloro-6-[[3-(3-hydroxy-3-methyl-butyl)-1-methyl-2-oxo - benzimidazol-5-yl]amino]pyridine-3-carbonitrile (100 mg, 237.93 µmol) in DMSO (1 mL) was added DIEA (153.75 mg, 1.19 mmol, 207.22 µL) and 4-fluoro-5-methyl-piperidin-3-ol (60.54 mg, 356.89 µmol, HCl). The mixture was stirred at 100°C for 12 hr. The solution was filtered and concentrated in vacuo. The residue was purified by prep-HPLC (column: Phenomenex C18 75*30mm*3µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 25%-55%, 8min) to give the title compound as a white solid (80 mg, 154.59 µmol, 65% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ = 8.94 (s, 1H), 7.92 (s, 1H), 7.32 (d, J = 1.7 Hz, 1H), 7.27 - 7.22 (m, 1H), 7.10 (d, J = 8.4 Hz, 1H), 5.26 (d, J = 6.0 Hz, 1H), 4.65 - 4.58 (m, 1H), 4.51 - 4.40 (m, 2H), 4.10 (br dd, J = 4.3, 12.9 Hz, 1H), 3.96 - 3.75 (m, 4H), 3.59 - 3.43 (m, 1H), 2.94 (t, J = 11.9 Hz, 1H), 2.74 - 2.60 (m, 2H), 1.94 - 1.76 (m, 1H), 1.74 - 1.66 (m, 2H), 1.18 - 1.14 (m, 6H), 0.84 - 0.78 (m, 3H). [00243] 5-chloro-2-((3S,4R,5R)-4-fluoro-3-hydroxy-5-methylpiperidin- 1-yl)-6-((3-(3-hydroxy- 3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazo l-5-yl)amino)nicotinonitrile (50) and 5-chloro-2-((3R,4S,5S)-4-fluoro-3-hydroxy-5-methylpiperidin- 1-yl)-6-((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile (51) [00244] Racemic 5-chloro-2-((3S,4R,5R)-4-fluoro-3-hydroxy-5-methylpiperidin- 1-yl)-6-((3-(3- hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d ]imidazol-5- yl)amino)nicotinonitrile (80 mg, 154.59 µmol) was purified by SFC (column: ChiralPak IH, 250*30mm, 10µm; mobile phase: [Neu-IPA]; B%: 45%-45%, 10min) to give 5-chloro-2- ((3S,4R,5R)-4-fluoro-3-hydroxy-5-methylpiperidin-1-yl)-6-((3 -(3-hydroxy-3-methylbutyl)-1- methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nico tinonitrile as a white solid (30 mg, 57.45 µmol, 30% yield, 99% purity) and 5-chloro-2-((3R,4S,5S)-4-fluoro-3-hydroxy-5- methylpiperidin-1-yl)-6-((3-(3-hydroxy-3-methylbutyl)-1-meth yl-2-oxo-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile as a white solid (30 mg, 56.00 µmol, 29% yield, 96% purity). [00245] 50: 1 H NMR (400 MHz, DMSO-d6) δ = 8.94 (s, 1H), 7.92 (s, 1H), 7.32 (d, J = 1.5 Hz, 1H), 7.28 - 7.21 (m, 1H), 7.10 (d, J = 8.3 Hz, 1H), 5.76 (s, 1H), 5.27 (d, J = 5.9 Hz, 1H), 4.64 - 4.48 (m, 1H), 4.47 (s, 1H), 4.17 - 4.05 (m, 1H), 3.95 - 3.80 (m, 3H), 3.59 - 3.42 (m, 1H), 3.30 (br s, 1H), 2.95 (t, J = 12.0 Hz, 1H), 2.74 - 2.65 (m, 1H), 2.34 (s, 1H), 1.96 - 1.76 (m, 1H), 1.74 - 1.61 (m, 2H), 1.17 (s, 6H), 0.82 (d, J = 6.9 Hz, 3H). [00246] 51: 1 H NMR (400 MHz, DMSO-d6) δ = 8.93 (s, 1H), 7.92 (s, 1H), 7.32 (d, J = 1.6 Hz, 1H), 7.24 (dd, J = 1.7, 8.3 Hz, 1H), 7.09 (d, J = 8.4 Hz, 1H), 5.26 (d, J = 6.0 Hz, 1H), 4.65 - 4.47 (m, 1H), 4.46 (s, 1H), 4.15 - 4.06 (m, 1H), 3.94 - 3.79 (m, 3H), 3.60 - 3.42 (m, 1H), 3.29 (s, 1H), 2.94 (t, J = 11.9 Hz, 1H), 2.76 - 2.62 (m, 2H), 2.36 - 2.29 (m, 1H), 1.98 - 1.76 (m, 1H), 1.75 - 1.64 (m, 2H), 1.16 (s, 6H), 0.81 (d, J = 6.9 Hz, 3H). [00247] The absolute configurations of compounds 50 & 51 were randomly assigned based on all substituents of the piperidine ring being in cis-conformation. [00248] Example 8: Synthesis of 5-fluoro-2-[(3S,4R,5R)-4-fluoro-3-hydroxy-5-methyl-1- piperidyl]-6-[[3-(3-hydroxy-3-methyl-butyl)-1-methyl-2-oxo-b enzimidazol-5-yl]amino]pyridine- 3-carbonitrile (52) and Synthesis of 5-fluoro-2-[(3R,4S,5S)-4-fluoro-3-hydroxy-5-methyl-1- piperidyl]-6-[[3-(3-hydroxy-3-methyl-butyl)-1-methyl-2-oxo-b enzimidazol-5-yl]amino]pyridine- 3-carbonitrile (53) [00249] 2-Chloro-5-fluoro-6-((3-(3-hydroxy-3-methylbutyl)-1-methyl-2 -oxo-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile [00250] To a mixture of 5-amino-3-(3-hydroxy-3-methylbutyl)-1-methyl-1H-benzo[d]imid azol- 2(3H)-one (10 g, 40.11 mmol) and 2,6-dichloro-5-fluoro-pyridine-3-carbonitrile (7.66 g, 40.11 mmol) in DMSO (100 mL) was added DIEA (10.37 g, 80.22 mmol, 13.97 mL) in one portion under N 2 . The mixture was stirred at 100°C for 1.3 hours. Water (150 mL) was added to the mixture and the resulting suspension was filtered and the filter cake was dried under reduced pressure to get the crude title compound as a white solid (16 g, crude), which was used without further purification. 1 H NMR (400 MHz, DMSO-d 6 ) δ ppm 9.95 (s, 1H), 8.02 - 8.24 (m, 1H), 7.51 (d, J = 3.00 Hz, 1H), 7.25 - 7.35 (m, 1H), 7.13 (dd, J = 8.38, 5.13 Hz, 1H), 4.44 (d, J = 5.25 Hz, 1H), 3.79 - 3.96 (m, 2H), 3.24 - 3.40 (m, 3H), 1.64 - 1.80 (m, 2H), 1.18 (d, J = 5.00 Hz, 5H). M+H + = 404.1. [00251] 5-Fluoro-2-((3S,4R,5R)-4-fluoro-3-hydroxy-5-methylpiperidin- 1-yl)-6-((3-(3- hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d ]imidazol-5- yl)amino)nicotinonitrile [00252] To a suspension of 2-chloro-5-fluoro-6-((3-(3-hydroxy-3-methylbutyl)-1-methyl-2 - oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitri le (300 mg, 742.87 µmol), 4- fluoro-5-methyl-piperidin-3-ol (367.26 mg, 1.49 mmol, TFA) and Cs2CO3 (2.42 g, 7.43 mmol) in dioxane (6 mL) was added rac-BINAP-Pd-G3 (73.72 mg, 74.29 µmol) under a nitrogen atmosphere. The mixture was stirred at 100°C for 12 hr. The mixture was filtered and the filtrate was concentrated and then purified by prep-HPLC to give the title compound as a white solid (60 mg, 114.01 µmol, 15% yield, 95% purity). 1 H NMR (400 MHz, DMSO-d6) δ ppm 9.41 (s, 1H), 7.77 (d, J = 10.88 Hz, 1H), 7.44 (s, 1H), 7.38 (d, J = 8.31 Hz, 1H), 7.08 (d, J = 8.44 Hz, 1H), 5.27 (d, J = 5.87 Hz, 1H), 4.50 - 4.66 (m, 1H), 4.47 (s, 1H), 4.02 (dd, J = 12.41, 4.71 Hz, 1H), 3.85 - 3.91 (m, 2H), 3.80 (br dd, J = 12.72, 3.30 Hz, 1H), 3.50 - 3.66 (m, 1H), 2.96 (t, J = 11.80 Hz, 1H), 2.74 (t, J = 12.47 Hz, 1H), 1.85 - 2.02 (m, 1H), 1.66 - 1.73 (m, 2H), 1.16 (s, 6H), 0.91 (d, J = 6.85 Hz, 3H). [00253] 5-Fluoro-2-((3S,4R,5R)-4-fluoro-3-hydroxy-5-methylpiperidin- 1-yl)-6-((3-(3-hydroxy- 3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazo l-5-yl)amino)nicotinonitrile (52) [00254] 5-Fluoro-2-((3S,4R,5R)-4-fluoro-3-hydroxy-5-methylpiperidin- 1-yl)-6-((3-(3- hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d ]imidazol-5- yl)amino)nicotinonitrile (70 mg, 139.85 µmol) was separated by SFC to give the title compound as a yellow solid (25.7 mg, 50.83 µmol, 36% yield, 99% purity). 1 H NMR (400 MHz, MeCN-d 3 ) δ ppm 7.76 (s, 1H), 7.55 (d, J = 1.83 Hz, 1H), 7.44 (d, J = 10.64 Hz, 1H), 7.20 (dd, J = 8.44, 1.96 Hz, 1H), 7.00 (d, J = 8.44 Hz, 1H), 4.55 - 4.72 (m, 1H), 4.10 (dd, J = 12.10, 3.18 Hz, 1H), 3.90 - 4.02 (m, 2H), 3.82 - 3.90 (m, 1H), 3.61 - 3.77 (m, 2H), 3.33 (s, 3H), 2.97 - 3.06 (m, 2H), 2.84 (t, J = 12.53 Hz, 1H), 1.98 - 2.11 (m, 1H), 1.80 (t, J = 7.95 Hz, 2H), 1.22 (d, J = 2.81 Hz, 6H), 0.99 (d, J = 6.97 Hz, 3H). M+H + = 501.3. [00255] 5-Fluoro-2-((3R,4S,5S)-4-fluoro-3-hydroxy-5-methylpiperidin- 1-yl)-6-((3-(3-hydroxy- 3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazo l-5-yl)amino)nicotinonitrile (53) [00256] 5-Fluoro-2-((3S,4R,5R)-4-fluoro-3-hydroxy-5-methylpiperidin- 1-yl)-6-((3-(3- hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d ]imidazol-5- yl)amino)nicotinonitrile (70 mg, 139.85 µmol) was separated by SFC to give the title compound as a yellow solid (24.8 mg, 49.05 µmol, 35% yield, 99% purity). 1 H NMR (400 MHz, MeCN-d 3 ) δ ppm 7.76 (s, 1H), 7.55 (d, J = 1.83 Hz, 1H), 7.45 (d, J = 10.76 Hz, 1H), 7.20 (dd, J = 8.38, 1.90 Hz, 1H), 7.00 (d, J = 8.31 Hz, 1H), 4.54 - 4.72 (m, 1H), 4.06 - 4.15 (m, 1H), 3.90 - 4.02 (m, 2H), 3.86 (dd, J = 13.20, 3.18 Hz, 1H), 3.59 - 3.78 (m, 2H), 3.33 (s, 3H), 2.99 - 3.06 (m, 1H), 2.98 (s, 1H), 2.84 (t, J = 12.53 Hz, 1H), 1.98 - 2.12 (m, 1H), 1.77 - 1.84 (m, 2H), 1.22 (d, J = 2.69 Hz, 6H), 0.99 (d, J = 6.97 Hz, 3H). M+H + = 501.3. [00257] The absolute configurations of compounds 52 & 53 were randomly assigned based on all substituents of the piperidine ring being in cis-conformation. [00258] Example 9: Synthesis of 5-fluoro-2-((3S,4R,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((3-((S)-3-hydroxybutyl)-1-methyl-2-oxo-2,3-dihydro-1H-ben zo[d]imidazol-5-yl)amino) nicotinonitrile (54) and 5-fluoro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((3-((R)-3- hydroxybutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol -5-yl)amino) nicotinonitrile (55)
[00259] 3-Hydroxybutyl 4-methylbenzenesulfonate [00260] To a mixture of butane-1,3-diol (25 g, 277.41 mmol, 51.23 mL) in DCM (500 mL) was added DMAP (3.39 g, 27.74 mmol) and TEA (56.14 g, 554.81 mmol, 77.22 mL) in one portion under N2. Then 4-methylbenzenesulfonyl chloride (52.89 g, 277.41 mmol) was added at 0°C slowly. The mixture was stirred at 20°C for 12 hours. The mixture was poured into sat. NaHCO3 (500 mL), extracted with DCM (500 mL x3). The combined organic layer was washed with brine (1.2 L), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The residue was purified by column chromatography (SiO2, Petroleum ether/Ethyl acetate = 10/1 to 2/1) to give the title compound as a purple oil (58 g, 227.71 mmol, 41% yield, 96% purity). 1 H NMR (400 MHz, CDCl 3 ) δ 7.73 (br d, J = 7.83 Hz, 2H), 7.30 (br d, J = 7.82 Hz, 2H), 4.11 - 4.25 (m, 1H), 4.00 - 4.11 (m, 1H), 3.78 - 3.93 (m, 1H), 2.39 (s, 3H), 1.58 - 2.06 (m, 3H), 1.11 (br d, J = 6.11 Hz, 3H). [00261] 3-Hydroxybutyl 4-methylbenzenesulfonate [00262] To a mixture of butane-1,3-diol (25 g, 277.41 mmol, 51.23 mL) in DCM (500 mL) was added DMAP (3.39 g, 27.74 mmol) and TEA (56.14 g, 554.81 mmol, 77.22 mL) in one portion under N2. Then 4-methylbenzenesulfonyl chloride (52.89 g, 277.41 mmol) was added at 0°C slowly. The mixture was stirred at 20°C for 12 hours. The mixture was poured into sat. NaHCO 3 (500 mL), extracted with DCM (500 mL x3). The combined organic layer was washed with brine (1.2 L), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The residue was purified by column chromatography (SiO 2 , Petroleum ether/Ethyl acetate = 10/1 to 2/1) to give the title compound as a purple oil (58 g, 227.71 mmol, 41% yield, 96% purity). 1 H NMR (400 MHz, CDCl3) δ 7.73 (br d, J = 7.83 Hz, 2H), 7.30 (br d, J = 7.82 Hz, 2H), 4.11 - 4.25 (m, 1H), 4.00 - 4.11 (m, 1H), 3.78 - 3.93 (m, 1H), 2.39 (s, 3H), 1.58 - 2.06 (m, 3H), 1.11 (br d, J = 6.11 Hz, 3H). [00263] 3-(3-Hydroxybutyl)-1-methyl-5-nitro-1H-benzo[d]imidazol-2(3H ),-one [00264] To a solution of 3-methyl-6-nitro-1H-benzimidazol-2-one (3 g, 15.53 mmol) and 3- hydroxybutyl 4-methylbenzenesulfonate (7.59 g, 31.06 mmol) in DMSO (30 mL), Cs2CO3 (10.12 g, 31.06 mmol) and KI (1.29 g, 7.77 mmol) was added. The flask was degassed and purged with N 2 for 3 times, and then the mixture was stirred at 100°C for 12 hr under N 2 atmosphere. Water (50 mL) was added to the mixture. The mixture was extracted with ethyl acetate (50 mL x3). The combined organic phase was dried with anhydrous Na2SO4, filtered and concentrated to yield a residue that was purified by column chromatography (silica gel, Petroleum ether/Ethyl acetate = 10:1 to 1:1) and then was triturated with Petroleum ether/Ethyl acetate = 3:1 (15 mL) at 15°C for 15 min to give the title compound as a yellow solid (2 g, 6.26 mmol, 40% yield, 83% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ ppm 1.09 (d, J = 6.25 Hz, 3H), 1.61 - 1.77 (m, 2H), 3.40 (s, 3H), 3.57 - 3.67 (m, 1H), 3.93 - 4.03 (m, 2H), 4.63 (d, J = 4.88 Hz, 1H), 7.35 (d, J = 8.63 Hz, 1H), 8.04 - 8.07 (m, 1H), 8.08 (d, J = 2.13 Hz, 1H). [00265] 5-Amino-3-(3-hydroxybutyl)-1-methyl-1H-benzo[d]imidazol-2(3H ),-one [00266] To a solution of Pd/C (0.5 g, 10% purity) in DMF (20 mL) was added 3-(3- hydroxybutyl)-1-methyl-5-nitro-1H-benzo[d]imidazol-2(3H)-one (2 g, 7.54 mmol) under Ar. The mixture was stirred at 50°C for 12 hr under H2 (15 psi). The mixture was filtered and the filtrate was concentrated in vacuo to give the title compound as a gray solid (1.7 g, 6.86 mmol, 91% yield, 95% purity), which was used without further purification. 1 H NMR (400 MHz, DMSO-d6) δ ppm 1.09 (d, J = 6.11 Hz, 3H), 1.56 - 1.68 (m, 2H), 3.22 (s, 3H), 3.61 (br s, 1H), 3.68 - 3.85 (m, 2H), 4.64 (br d, J = 3.55 Hz, 1H), 4.78 (br s, 2H), 6.31 (dd, J = 8.31, 1.71 Hz, 1H), 6.41 (d, J = 1.59 Hz, 1H), 6.79 (d, J = 8.19 Hz, 1H). [00267] 2-Chloro-5-fluoro-6-((3-(3-hydroxybutyl)-1-methyl-2-oxo-2,3- dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile [00268] To a solution of 5-amino-3-(3-hydroxybutyl)-1-methyl-benzimidazol-2-one (200 mg, 850.05 µmol) and 2,6-dichloro-5-fluoro-pyridine-3-carbonitrile (194.82 mg, 1.02 mmol) in DMSO (2 mL) was added DIPEA (219.72 mg, 1.70 mmol, 296.13 µL). The mixture was stirred at 100°C for 12 hr . The mixture was poured into water (5 mL) and stirred for 10 min. The mixture was filtered and the filter cake was washed with ethyl acetate (3 mL). The filter cake was dried in vacuo to give the title compound as a yellow solid (300 mg, 644.26 µmol, 84% yield, 84% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.94 (s, 1H), 8.11 (d, J = 10.63 Hz, 1H), 7.50 (d, J = 1.38 Hz, 1H), 7.29 (dd, J = 8.44, 1.56 Hz, 1H), 7.12 (d, J = 8.38 Hz, 1H), 4.63 (d, J = 4.63 Hz, 1H), 3.74 - 3.96 (m, 2H), 3.57 - 3.71 (m, 1H), 3.32 (s, 3H), 1.59 - 1.80 (m, 2H), 1.10 (d, J = 6.13 Hz, 3H). [00269] (S)-2-Chloro-5-fluoro-6-((3-(3-hydroxybutyl)-1-methyl-2-oxo- 2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile and (R)-2-chloro-5-fluoro-6-((3-(3-hydroxybutyl)-1- methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nico tinonitrile [00270] The residue was purified by prep-HPLC (neutral condition; column: Phenomenex C18 80*40mm*3µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 15%-45%, 8min). The residue was further separated by SFC (condition: column: REGIS(S,S)WHELK-O1 (250 mm*25mm, 10µm); mobile phase: [0.1%NH3H2O in IPA]; B%:45%-45%, 7min) to give (S)-2-chloro-5-fluoro-6-((3- (3-hydroxybutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imida zol-5-yl)amino)nicotinonitrile as a white solid (40 mg, 97.47 µmol, 15% yield, 95% purity) and (R)-2-chloro-5-fluoro-6-((3-(3- hydroxybutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo [d]imidazol-5-yl)amino)nicotinonitrile as a white solid (40 mg, 92.14 µmol, 14% yield, 90% purity). 1 H NMR (400 MHz, MeOD-d4) δ ppm 7.72 - 7.80 (m, 1H), 7.68 (s, 1H), 7.35 (br d, J = 8.25 Hz, 1H), 7.13 (br d, J = 8.25 Hz, 1H), 4.02 (br t, J = 7.00 Hz, 2H), 3.78 (br d, J = 4.38 Hz, 1H), 3.43 (s, 3H), 1.97 - 2.10 (m, 1H), 1.74 - 1.97 (m, 2H), 1.27 - 1.39 (m, 1H), 1.22 (br d, J = 6.00 Hz, 3H). [00271] 5-Fluoro-2-((3S,4R,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((3-((S)-3- hydroxybutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol -5-yl)amino)nicotinonitrile (54) [00272] To a mixture of (S)-2-chloro-5-fluoro-6-((3-(3-hydroxybutyl)-1-methyl-2-oxo- 2,3- dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile (40 mg, 102.61 µmol) and (3S,4S,5R)- 4-fluoro-3,5-dimethyl-piperidine (37.74 mg, 153.92 µmol, TFA) in DMSO (0.5 mL) was added DIEA (26.52 mg, 205.23 µmol, 35.75 µL) under N2. The mixture was stirred at 100°C for 12 hr. The residue was purified by prep-HPLC (neutral condition; column: Phenomenex C18 75*30mm*3µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 25%-55%, 8min) to give the title compound as a white solid (16 mg, 33.02 µmol, 32% yield, 100% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.37 (s, 1H), 7.76 (d, J = 11.00 Hz, 1H), 7.50 (d, J = 1.71 Hz, 1H), 7.37 (dd, J = 8.44, 1.83 Hz, 1H), 7.09 (d, J = 8.44 Hz, 1H), 4.54 - 4.64 (m, 2H), 4.45 (s, 1H), 3.76 - 3.98 (m, 4H), 3.55 - 3.68 (m, 1H), 2.80 (t, J = 12.59 Hz, 2H), 1.77 - 1.98 (m, 2H), 1.54 - 1.77 (m, 2H), 1.08 (d, J = 6.11 Hz, 3H), 0.90 (dd, J = 6.85, 2.57 Hz, 6H). [00273] 5-Fluoro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((3-((R)-3- hydroxybutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol -5-yl)amino)nicotinonitrile (55) [00274] To a mixture of (R)-2-chloro-5-fluoro-6-((3-(3-hydroxybutyl)-1-methyl-2-oxo- 2,3- dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile (40 mg, 102.61 µmol) and (3S,4S,5R)- 4-fluoro-3,5-dimethyl-piperidine (37.74 mg, 153.92 µmol, TFA) in DMSO (0.5 mL) was added DIEA (26.52 mg, 205.22 umol, 35.75 µL) under N 2 . The mixture was stirred at 100°C for 12 hr. The residue was purified by prep-HPLC (neutral condition; column: Phenomenex C18 75*30mm*3µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 25%-55%, 8min) to give the title compound as a white solid (9.5 mg, 19.61 µmol, 19% yield, 100% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.38 (s, 1H), 7.76 (d, J = 11.00 Hz, 1H), 7.50 (d, J = 1.83 Hz, 1H), 7.37 (dd, J = 8.44, 1.83 Hz, 1H), 7.09 (d, J = 8.44 Hz, 1H), 4.55 - 4.68 (m, 2H), 4.45 (s, 1H), 3.76 - 3.99 (m, 4H), 3.55 - 3.70 (m, 1H), 2.80 (br t, J = 12.59 Hz, 2H), 1.55 - 2.03 (m, 4H), 1.05 - 1.11 (m, 3H), 0.90 (dd, J = 6.91, 2.51 Hz, 6H). [00275] The absolute configurations of compounds 54 & 55 were randomly assigned based on all substituents of the piperidine ring being in cis-conformation. [00276] Example 10: Synthesis of 5-fluoro-2-[(3R,4R,5S)-4-fluoro-3-(2-hydroxyethyl)-5- methyl-1-piperidyl]-6-[[3-(3-hydroxybutyl)-1-methyl-2-oxo-be nzimidazol-5-yl]amino]pyridine- 3-carbonitrile (56) and 5-fluoro-2-[(3S,4S,5R)-4-fluoro-3-(2-hydroxyethyl)-5-methyl- 1- piperidyl]-6-[[3-(3-hydroxybutyl)-1-methyl-2-oxo-benzimidazo l-5-yl]amino]pyridine-3- carbonitrile (57)
[00277] Methyl 2-(1-benzyl-5-methyl-4-oxopiperidin-3-yl)acetate [00278] To a mixture of 1-benzyl-3-methyl-piperidin-4-one (25 g, 122.98 mmol) in THF (250 mL) was added LDA (2 M, 79.94 mL) dropwise at -65°C and the mixture was stirred at -65°C for 30 min, then HMPA (28.65 g, 159.88 mmol, 28.09 mL) was added dropwise and the mixture was stirred at -65°C for 30 min. Then methyl 2-bromoacetate (24.46 g, 159.88 mmol, 15.10 mL) was added dropwise. The mixture was warmed to 15°C and stirred for 12 hr. Then water (600 mL) was added to the mixture (combined with another batch of same scale) and extracted with EtOAc (800 mL x3). The combined organic layer was dried over Na 2 SO 4 , filtered and concentrated under reduced pressure to give the residue. The residue was purified by column chromatography (SiO2, Petroleum ether/Ethyl acetate = 1/0 to 3/1) to give the title compound as a yellow solid (40 g, 116.22 mmol, 47% yield, 80% purity). ( 1 H NMR (400 MHz, DMSO-d 6 ) δ 7.37 - 7.27 (m, 5H), 3.66 - 3.62 (m, 2H), 3.59 - 3.54 (m, 3H), 3.20 - 3.01 (m, 3H), 2.78 (td, J = 6.1, 11.8 Hz, 1H), 2.56 (d, J = 7.6 Hz, 1H), 2.24 - 1.99 (m, 3H), 0.83 (d, J = 6.6 Hz, 3H). [00279] 1-Benzyl-3-(2-hydroxyethyl)-5-methylpiperidin-4-ol [00280] To a solution of methyl 2-(1-benzyl-5-methyl-4-oxo-3-piperidyl)acetate (10 g, 36.32 mmol) in THF (100 mL) was added LAH (2.76 g, 72.64 mmol) at 0°C. The mixture was stirred at 20°C for 1 hr. The mixture was added water (3 mL) and 2M NaOH (3 mL) at 0°C. The mixture was dried with anhydrous Na2SO4 and stirred for 20 min at 15°C. Then the mixture was filtered and the filtrate was concentrated under reduced pressure to give the title compound as a yellow oil (9 g, crude). 1 H NMR (400 MHz, DMSO-d 6 ) δ 7.35 - 7.20 (m, 7H), 4.62 (d, J = 6.5 Hz, 1H), 4.44 (t, J = 5.0 Hz, 1H), 3.52 - 3.42 (m, 2H), 2.85 (br d, J = 10.3 Hz, 1H), 2.70 - 2.64 (m, 1H), 1.87 - 1.77 (m, 1H), 1.69 - 1.41 (m, 5H), 1.14 - 1.07 (m, 1H), 0.83 (d, J = 6.4 Hz, 3H). [00281] 1-Benzyl-3-(2-((tert-butyldiphenylsilyl)oxy)ethyl)-5-methyl- piperidin-4-ol [00282] To a solution of 1-benzyl-3-(2-hydroxyethyl)-5-methyl-piperidin-4-ol (5.00 g, 20.05 mmol) in DCM (60 mL) was added TBDPSCl (6.06 g, 22.06 mmol, 5.66 mL), DMAP (734.93 mg, 6.02 mmol) and TEA (10.15 g, 100.26 mmol, 13.96 mL) .The mixture was stirred at 15°C for 4 hr. After addition of water (100 mL), the solution was extracted with EtOAc (100 mL x3). The combined organic phase was washed with brine (100 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo to give a residue that was purified by flash silica gel column chromatography (Silica Flash Column, Eluent of 0~30% Ethyl acetate/Petroleum ether gradient) to give the title compound as a yellow oil (7.5 g, 14.11 mmol, 70% yield, 92% purity). 1 H NMR (400 MHz, DMSO-d6) δ 7.71 - 7.54 (m, 4H), 7.46 - 7.36 (m, 6H), 7.33 - 7.18 (m, 4H), 4.50 (d, J = 6.7 Hz, 1H), 4.03 (q, J = 7.1 Hz, 1H), 3.70 - 3.55 (m, 2H), 3.41 - 3.29 (m, 3H), 2.90 - 2.63 (m, 2H), 2.06 - 1.95 (m, 1H), 1.68 - 1.48 (m, 3H), 1.29 - 1.12 (m, 1H), 1.01 - 0.91 (m, 9H), 0.83 (d, J = 6.4 Hz, 3H). [00283] 1-Benzyl-3-(2-((tert-butyldiphenylsilyl)oxy)ethyl)-4-fluoro- 5-methylpiperidine [00284] To a solution of 1-benzyl-3-(2-((tert-butyldiphenylsilyl)oxy)ethyl)-5-methyl- piperidin- 4-ol (5.00 g, 10.25 mmol) in DCM (50 mL) was added DAST (3.30 g, 20.50 mmol, 2.71 mL) at -65°C. The mixture was stirred at -70°C for 0.5 hr and stirred at 15°C for 11.5 hr. Sat. NaHCO3 (50 mL) was added to the mixture and extracted with DCM (50 mL x3). The combined organic phase was dried with anhydrous Na2SO4, filtered and concentrated under reduced pressure. The residue was purified by flash silica gel column chromatography (Silica Flash Column, Eluent of 0~30% Ethyl acetate/Petroleum ether gradient) to give the title compound as a yellow oil (3.3 g, 6.71 mmol, 65% yield, 99% purity). 1 H NMR (400 MHz, CDCl 3 ) δ 7.69 - 7.62 (m, 4H), 7.44 - 7.36 (m, 5H), 7.33 - 7.27 (m, 5H), 3.81 - 3.59 (m, 3H), 3.56 - 3.39 (m, 2H), 3.06 - 2.76 (m, 2H), 2.08 - 1.88 (m, 3H), 1.80 - 1.62 (m, 2H), 1.44 - 1.31 (m, 1H), 1.04 (s, 9H), 0.96 (d, J = 6.5 Hz, 3H). [00285] 2-[(3R,4R,5S)-1-benzyl-4-fluoro-5-methyl-3-piperidyl]ethoxy- tert-butyl-diphenyl- silane (intermediate 3) and 2-[(3S,4S,5R)-1-benzyl-4-fluoro-5-methyl-3-piperidyl]ethoxy- tert- butyl-diphenyl-silane (intermediate 4) [00286] Racemic 1-benzyl-3-(2-((tert-butyldiphenylsilyl)oxy)ethyl)-4-fluoro- 5- methylpiperidine was purified by SFC (column: DAICEL CHIRALCEL OD (250mm*50mm,10µm); mobile phase: [0.1%NH3H2O IPA]; B%: 25%-25%, 5min) to give 2- [(3R,4R,5S)-1-benzyl-4-fluoro-5-methyl-3-piperidyl]ethoxy-te rt-butyl-diphenyl-silane as a white solid (1.5 g, 3.03 mmol, 45% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 7.60 - 7.54 (m, 4H), 7.48 - 7.37 (m, 6H), 7.33 - 7.21 (m, 5H), 3.89 - 3.68 (m, 1H), 3.64 (t, J = 6.3 Hz, 2H), 3.48 - 3.38 (m, 2H), 2.96 - 2.85 (m, 1H), 2.80 - 2.70 (m, 1H), 1.98 - 1.75 (m, 3H), 1.74 - 1.64 (m, 2H), 1.40 - 1.29 (m, 1H), 0.95 (s, 9H), 0.88 (d, J = 6.2 Hz, 3H) and 2-[(3S,4S,5R)-1-benzyl-4-fluoro-5- methyl-3-piperidyl]ethoxy-tert-butyl-diphenyl-silane as a white solid (1.5 g, 3.03 mmol, 45% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d6) δ 7.60 - 7.53 (m, 4H), 7.48 - 7.37 (m, 6H), 7.33 - 7.20 (m, 5H), 3.88 - 3.69 (m, 1H), 3.64 (t, J = 6.3 Hz, 2H), 3.43 (d, J = 0.7 Hz, 2H), 2.96 - 2.70 (m, 2H), 2.00 - 1.75 (m, 3H), 1.74 - 1.66 (m, 2H), 1.41 - 1.28 (m, 1H), 0.95 (s, 9H), 0.88 (d, J = 6.3 Hz, 3H). [00287] 2-[(3R,4R,5S)-1-Benzyl-4-fluoro-5-methyl-3-piperidyl]ethanol [00288] A solution of 2-[(3R,4R,5S)-1-benzyl-4-fluoro-5-methyl-3-piperidyl]ethoxy- tert-butyl- diphenyl-silane (1.5 g, 3.06 mmol) in HCl/MeOH (50 mL) was stirred at 15°C for 8 hr. After addition of sat. aq. NaHCO3 (30 mL), the solution was extracted with EtOAc (30 mL x3). The combined organic phase was washed with brine (30 mL), dried over anhydrous Na 2 SO 4 , filtered and concentrated in vacuo to give the title compound as a yellow oil (600 mg, 2.39 mmol, 78% yield, 100% purity). 1 H NMR (400 MHz, DMSO-d6) δ 7.35 - 7.21 (m, 5H), 4.40 (t, J = 5.1 Hz, 1H), 3.88 - 3.63 (m, 1H), 3.55 - 3.46 (m, 1H), 3.44 - 3.31 (m, 4H), 2.99 - 2.85 (m, 1H), 2.78 - 2.65 (m, 1H), 1.81 - 1.61 (m, 4H), 1.30 - 1.13 (m, 1H), 0.88 (d, J = 6.4 Hz, 3H). [00289] 2-[(3R,4R,5S)-4-Fluoro-5-methyl-3-piperidyl]ethanol [00290] To a solution of 2-[(3R,4R,5S)-1-benzyl-4-fluoro-5-methyl-3-piperidyl]ethanol (600 mg, 2.39 mmol) in EtOH (40 mL) was added Pd/C (300 mg, 10% purity) under Ar atmosphere. The flask was degassed and purged with H 2 for 3 times. The mixture was stirred under H 2 (15 Psi) at 60°C for 12 hr. The reaction mixture was filtered through a pad of Celite® and the filtrate was concentrated in vacuo to give the title compound as a grey oil (200 mg, 372.17 µmol, 16% yield, 30% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 4.43 (br dd, J = 6.5, 11.8 Hz, 1H), 3.54 - 3.35 (m, 3H), 3.34 - 3.21 (m, 1H), 2.82 - 2.61 (m, 2H), 2.13 - 1.88 (m, 2H), 1.81 (dtd, J = 4.2, 6.7, 13.8 Hz, 1H), 1.39 - 1.29 (m, 1H), 1.22 (t, J = 7.3 Hz, 1H), 1.05 (t, J = 7.0 Hz, 1H), 1.01 - 0.95 (m, 3H). [00291] 5-Fluoro-2-[(3R,4R,5S)-4-fluoro-3-(2-hydroxyethyl)-5-methyl- 1-piperidyl]-6-[[3-(3- hydroxybutyl)-1-methyl-2-oxo-benzimidazol-5-yl]amino]pyridin e-3-carbonitrile (50) [00292] To a solution of 2-chloro-5-fluoro-6-[[3-(3-hydroxybutyl)-1-methyl-2-oxo- benzimidazol-5-yl]amino]pyridine-3-carbonitrile (20 mg, 51.31 µmol) in DMSO (1 mL) was added 2-[(3R,4R,5S)-4-fluoro-5-methyl-3-piperidyl]ethanol (8.27 mg, 51.31 µmol) and DIEA (26.52 mg, 205.24 µmol, 35.75 µL). The mixture was stirred at 100°C for 2 hr. The solution was filtered and concentrated under vacuum. The residue was purified by prep-HPLC (column: Phenomenex C18 75*30mm*3µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 10%-40%, 8min) to give the title compound as a yellow solid (3 mg, 5.36 µmol, 10% yield, 92% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.39 (br s, 1H), 7.78 (br d, J = 10.9 Hz, 1H), 7.52 - 7.31 (m, 2H), 7.14 - 7.00 (m, 1H), 4.62 (br d, J = 4.0 Hz, 1H), 4.49 - 4.37 (m, 1H), 4.29 - 4.14 (m, 1H), 4.08 - 4.00 (m, 1H), 3.98 - 3.90 (m, 1H), 3.89 - 3.78 (m, 2H), 3.62 (br d, J = 1.5 Hz, 1H), 3.47 - 3.36 (m, 3H), 2.78 - 2.69 (m, 1H), 2.67 - 2.60 (m, 1H), 1.82 - 1.62 (m, 6H), 1.37 - 1.25 (m, 2H), 1.09 (br d, J = 5.5 Hz, 3H), 0.92 (br s, 3H). [00293] 2-[(3S,4S,5R)-1-Benzyl-4-fluoro-5-methyl-3-piperidyl]ethanol [00294] A solution of 2-[(3S,4S,5R)-1-benzyl-4-fluoro-5-methyl-3-piperidyl]ethoxy- tert-butyl- diphenyl-silane (1.5 g, 3.06 mmol) in HCl/MeOH (1.25 M, 50 mL) was stirred at 15°C for 8 hr. After addition of sat. aq. NaHCO 3 (30 mL), the solution was extracted with EtOAC (30 mL x3). The combined organic phases was washed with brine (30 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo to give the crude title compound as a yellow oil (400 mg, 1.59 mmol, 52% yield, 100% purity), which was used without further purifications. 1 H NMR (400 MHz, DMSO-d6) δ 7.39 - 7.20 (m, 5H), 4.40 (t, J = 5.1 Hz, 1H), 3.90 - 3.65 (m, 1H), 3.56 - 3.47 (m, 1H), 3.42 - 3.31 (m, 4H), 2.98 - 2.67 (m, 2H), 1.81 - 1.61 (m, 4H), 1.30 - 1.14 (m, 1H), 0.89 (d, J = 6.4 Hz, 3H). M+H + = 252.1. [00295] 2-[(3S,4S,5R)-4-Fluoro-5-methyl-3-piperidyl]ethanol [00296] To a solution of 2-[(3S,4S,5R)-1-benzyl-4-fluoro-5-methyl-3-piperidyl]ethanol (400 mg, 1.59 mmol) in EtOH (5 mL) was added Pd/C (50 mg, 10% purity) under an argon atmosphere. The suspension was degassed and purged with H2 for 3 times. The mixture was stirred under H2 (15 Psi ) at 60°C for 12 hr. The reaction mixture was filtered through a pad of Celite® and the filtrate was concentrated under reduced pressure to give the crude title compound as a grey oil (200 mg, crude), which was used without further purifications. 1 H NMR (400 MHz, DMSO-d6) δ 4.48 - 4.38 (m, 1H), 4.23 - 4.02 (m, 1H), 3.53 - 3.38 (m, 3H), 3.33 - 3.22 (m, 1H), 2.85 - 2.60 (m, 2H), 2.12 - 1.90 (m, 2H), 1.81 (dtd, J = 4.2, 6.8, 13.8 Hz, 1H), 1.41 - 1.29 (m, 1H), 1.26 - 1.19 (m, 1H), 1.06 (t, J = 7.0 Hz, 1H), 1.02 - 0.96 (m, 3H). [00297] 5-Fluoro-2-[(3S,4S,5R)-4-fluoro-3-(2-hydroxyethyl)-5-methyl- 1-piperidyl]-6-[[3-(3- hydroxybutyl)-1-methyl-2-oxo-benzimidazol-5-yl]amino]pyridin e-3-carbonitrile (56) [00298] To a solution of 2-chloro-5-fluoro-6-[[3-(3-hydroxybutyl)-1-methyl-2-oxo- benzimidazol-5-yl]amino]pyridine-3-carbonitrile (20 mg, 51.31 µmol) in DMSO (1 mL) was added 2-[(3S,4S,5R)-4-fluoro-5-methyl-3-piperidyl]ethanol (14.12 mg, 87.60 µmol) and DIEA (26.52 mg, 205.24 µmol, 35.75 µL). The mixture was stirred at 100°C for 2 hrs. The solution was filtered and the filtrate concentrated under vacuum to give a residue that was purified by prep- HPLC to give the title compound as a yellow solid (5 mg, 8.94 µmol, 17% yield, 92% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.39 (s, 1H), 7.77 (d, J = 10.9 Hz, 1H), 7.49 (dd, J = 1.9, 2.9 Hz, 1H), 7.39 (br d, J = 8.4 Hz, 1H), 7.09 (d, J = 8.5 Hz, 1H), 4.62 (d, J = 4.6 Hz, 1H), 4.48 - 4.40 (m, 1H), 4.28 - 4.18 (m, 1H), 4.08 - 4.01 (m, 1H), 3.98 - 3.91 (m, 1H), 3.90 - 3.78 (m, 2H), 3.62 (br s, 1H), 3.46 - 3.37 (m, 3H), 2.73 (br t, J = 12.3 Hz, 1H), 2.68 - 2.60 (m, 1H), 1.84 - 1.62 (m, 6H), 1.37 - 1.22 (m, 2H), 1.09 (d, J = 6.1 Hz, 3H), 0.93 (dd, J = 2.4, 6.4 Hz, 3H). M+H + = 515.3. [00299] The absolute configurations of compounds 56 & 57 were randomly assigned based on the amino group and methyl group being in cis-conformation.
[00300] Example 11: Synthesis of 2-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-1-(2-(dimethylami no)ethyl)-2-oxo-1,2- dihydroquinolin-3-yl)oxy)-N-methylacetamide (11) H H H Br O N N O N O O TMSCHN 2 O 2 o DBU, DMS O O N O TEA, 20 C, 12 h O, O 2 N OH O 2 N O 100 o C, 3 h O H N O NC Cl NC Cl H N O Pd/C, DMF, H 2 Cl N Cl H 2 N O Cl N O 50 o C, 50 psi, 12 h N O H DIPEA, DMF, O O 100 o C, 4 h O N H NC Cl H N O NC Cl H N O F F TFA MeNH 2 , NMP, EtOH N N N H O N N N O F O F H 70 o C O DIPEA, DMSO , 12 h 100 o F F C, 12 h O HN N N N C l .HCl NC Cl N O 4 E 0 t O % H MeNH2/H2O, NC Cl N O Cs 2 CO 3 , KI, DMSO, N N 70 o C, 12 h o N O N N N O 60 C, 2 h F H O F H O F F O 11 HN [00301] 3-Hydroxy-6-nitroquinolin-2(1H)-one [00302] To a mixture of 5-nitroindoline-2,3-dione (20 g, 104.10 mmol) and TEA (21.07 g, 208.19 mmol, 28.98 mL) in EtOH (600 mL) was added TMSCHN2 (2 M, 62.46 mL) dropwise at 20°C. The reaction mixture was stirred at 20°C for 12 hr and was concentrated in vacuo. Then 1N HCl (600 mL) was added to the concentrated reaction mixture and stirred for 3 hr. The resulting suspension was filtered and the filter cake was collected and dried in vacuo to give the title compound as an orange-red solid (40 g, crude). 1 H NMR (400 MHz, DMSO-d 6 ) δ 12.54 (s, 1H), 10.38 - 9.71 (m, 1H), 8.51 (d, J = 2.4 Hz, 1H), 8.13 (dd, J = 2.4, 9.2 Hz, 1H), 7.39 (d, J = 9.2 Hz, 1H), 7.31 (s, 1H). [00303] Methyl 2-((6-nitro-2-oxo-1,2-dihydroquinolin-3-yl)oxy)acetate [00304] To a solution of 3-hydroxy-6-nitro-1H-quinolin-2-one (20 g, 97.01 mmol) in DMSO (200 mL) was added DBU (17.72 g, 116.42 mmol, 17.55 mL) and then methyl 2-bromoacetate (17.81 g, 116.42 mmol, 10.99 mL), and the resulting mixture was stirred at 100°C for 3 hr. The reaction mixture was treated with water (600 mL) which generated a precipitate. The suspension was filtered and the filter cake was washed with EtOAc (800 mL), the solid was dried in vacuo to give the title compound as an orange-red solid (26 g, crude). 1 H NMR (400 MHz, DMSO-d6) δ 12.51 (s, 1H), 8.54 (d, J = 2.4 Hz, 1H), 8.20 - 8.17 (m, 1H), 7.49 (s, 1H), 7.39 (d, J = 9.2 Hz, 1H), 4.89 (s, 2H), 3.77 - 3.71 (s, 3H). [00305] Methyl 2-((6-amino-2-oxo-1,2-dihydroquinolin-3-yl)oxy)acetate [00306] To a solution of methyl 2-[(6-nitro-2-oxo-1H-quinolin-3-yl)oxy]acetate (16 g, 57.51 mmol) in DMF (200 mL) was added Pd/C (5 g, 10% purity) under Ar atmosphere. The flask was degassed and purged with H2 for 3 times. The mixture was stirred under H2 (50 psi) at 50°C for 12 hr. The reaction mixture was filtered and the filtrate was concentrated in vacuo to give the title compound as a grey-black solid (12 g, crude). 1 H NMR (400 MHz, DMSO-d 6 ) δ 11.60 (s, 1H), 7.95 (s, 1H), 7.03 - 6.98 (m, 2H), 6.72 (dd, J = 2.4, 8.8 Hz, 1H), 6.68 (d, J = 2.0 Hz, 1H), 6.05 - 5.39 (m, 2H), 4.83 (s, 2H), 3.71 (s, 3H). [00307] Methyl 2-((6-((3,6-dichloro-5-cyanopyridin-2-yl)amino)-2-oxo-1,2-di hydroquinolin-3- yl)oxy) acetate [00308] To a mixture of methyl 2-[(6-amino-2-oxo-1H-quinolin-3-yl)oxy]acetate (3 g, 12.09 mmol) and 2,5,6-trichloropyridine-3-carbonitrile (2.51 g, 12.09 mmol) in DMF (30 mL) was added DIPEA (3.12 g, 24.17 mmol, 4.21 mL), and the reaction mixture was stirred at 100°C for 4 hr. The mixture was cooled to 15°C and water (~50 mL) was added, forming a precipitate. The mixture was filtered and the filter cake was washed with EtOAc (~80 mL) and dried in vacuo to give the title compound as a brown solid (15 g, crude). 1 H NMR (400 MHz, DMSO-d 6 ) δ 12.02 (s, 1H), 9.58 (s, 1H), 8.35 (s, 1H), 7.65 (d, J = 2.0 Hz, 1H), 7.48 (dd, J = 2.0, 8.8 Hz, 1H), 7.27 (d, J = 8.8 Hz, 1H), 7.21 (s, 1H), 4.88 (s, 2H), 3.72 (s, 3H). [00309] Methyl 2-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethy lpiperidin-1- yl)pyridin-2-yl)amino)-2-oxo-1,2-dihydroquinolin-3-yl)oxy)ac etate [00310] To a solution of methyl 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-2-oxo-1H- quinolin-3-yl]oxy]acetate (5 g, 11.93 mmol) and (3S,5R)-4,4-difluoro-3,5-dimethyl-piperidine (4.08 g, 15.51 mmol, TFA) in DMSO (50 mL) was added DIPEA (7.71 g, 59.63 mmol, 10.39 mL) and the reaction mixture was stirred at 100°C for 12 h. The mixture was cooled to 15°C and water (~50 mL) was added, forming a precipitate. The mixture was filtered and the filter cake was washed by EtOAc (~80 mL) and dried n vacuo. The residue was purified by column chromatography (SiO 2 , Petroleum ether/Ethyl acetate = 1/1 to 0/1) to give a residue which was then triturated with a mixture of solvent (PE:EtOAc = 1:1, 40 mL) at 20°C for 30 min to give the title compound as a pale brown solid (2.3 g, 3.98 mmol, 33% yield, 92% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 11.96 (s, 1H), 9.08 (s, 1H), 7.97 (s, 1H), 7.66 (s, 1H), 7.49 (dd, J = 2.0, 8.8 Hz, 1H), 7.25 (d, J = 8.4 Hz, 1H), 7.20 (s, 1H), 4.85 (s, 2H), 4.10 (d, J = 13.2 Hz, 2H), 3.72 (s, 3H), 2.77 (t, J = 12.4 Hz, 2H), 2.14 - 1.93 (m, 2H), 0.82 (br d, J = 6.4 Hz, 6H). [00311] 2-((6-((3-Chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethy lpiperidin-1-yl)pyridin- 2-yl)amino)-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-methylacet amide [00312] To a mixture of methyl 2-[[6-[[3-chloro-5-cyano-6-[(3S,5R)-4,4-difluoro-3,5-dimethy l- 1-piperidyl]-2-pyridyl]amino]-2-oxo-1H-quinolin-3-yl]oxy]ace tate (10 g, 23.85 mmol) in EtOH (90 mL) and NMP (10 mL) was added MeNH 2 (14.82 g, 190.83 mmol, 40% purity), and the reaction mixture was stirred at 70°C for 12 hr. The mixture was cooled to 20°C, then the reaction mixture was filtered and the filter cake was collected and dried under reduced pressure to give the title compound as a pale brown solid (9.2 g, 21.12 mmol, 89% yield, 96% purity). [00313] Methyl 2-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethy lpiperidin-1- yl)pyridin-2-yl)amino)-1-(2-(dimethylamino)ethyl)-2-oxo-1,2- dihydroquinolin-3-yl)oxy)acetate [00314] A mixture of methyl 2-[[6-[[3-chloro-5-cyano-6-[(3S,5R)-4,4-difluoro-3,5-dimethy l-1- piperidyl]-2-pyridyl]amino]-2-oxo-1H-quinolin-3-yl]oxy]aceta te (350 mg, 657.97 µmol), 2- chloro-N,N-dimethyl-ethanamine (123.21 mg, 855.36 µmol, HCl), Cs2CO3 (643.14 mg, 1.97 mmol), KI (54.61 mg, 328.99 µmol) in DMSO (5 mL) was stirred at 60°C for 2 hr under N2 atmosphere. Water (5 mL) was added to the mixture, the precipitated solids were filtered and washed with H2O (20 mL) and petroleum ether/ethyl acetate (1/1, 5 mL), then purified by prep- HPLC (column: Phenomenex C18 80*40 mm*3 µm; mobile phase: [water (NH4HCO3)-ACN]; B%: 50%-70%, 8 min) to give the title compound as a yellow solid (50 mg, 78.36 µmol, 12% yield, 95% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.14 (s, 1H), 7.99 (s, 1H), 7.75 (d, J = 2.0 Hz, 1H), 7.63 (dd, J = 2.4, 9.2 Hz, 1H), 7.46 (d, J = 9.2 Hz, 1H), 7.22 (s, 1H), 4.86 (s, 2H), 4.38 (t, J = 6.8 Hz, 2H), 4.12 (br d, J = 12.4 Hz, 2H), 3.72 (s, 3H), 2.78 (br t, J = 12.4 Hz, 2H), 2.52 (d, J = 1.6 Hz, 2H), 2.23 (s, 6H), 2.10 - 1.99 (m, 2H), 0.84 (d, J = 6.8 Hz, 6H). [00315] 2-((6-((3-Chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethy lpiperidin-1-yl)pyridin- 2-yl)amino)-1-(2-(dimethylamino)ethyl)-2-oxo-1,2-dihydroquin olin-3-yl)oxy)-N-methylacetamide (11) [00316] To a mixture of methyl 2-[[6-[[3-chloro-5-cyano-6-[(3S,5R)-4,4-difluoro-3,5-dimethy l- 1-piperidyl]-2-pyridyl]amino]-1-[2-(dimethylamino)ethyl]-2-o xo-3-quinolyl]oxy]acetate (50 mg, 82.91 µmol) in EtOH (5 mL) was added methenamine (5 mL, 40% purity in H2O). The mixture was stirred at 70°C for 12 hr. The reaction mixture was concentrated under reduced pressure to give a residue which was purified by prep-HPLC (column: Waters Xbridge BEH C18100*30 mm*10 µm; mobile phase: [water ( NH4HCO3)-ACN]; B%: 35%-65%, 10min) to give the title compound as a white solid (6 mg, 9.25 µmol, 11% yield, 93% purity). 1 H NMR (400 MHz, DMSO- d 6 ) δ 9.14 (s, 1H), 7.99 (s, 1H), 7.74 (s, 1H), 7.66 (d, J = 8.8 Hz, 1H), 7.47 (d, J = 9.2 Hz, 1H), 7.22 (s, 2H), 4.53 (s, 2H), 4.39 (t, J = 6.8 Hz, 2H), 4.13 (d, J = 12.4 Hz, 2H), 2.78 (t, J = 12.8 Hz, 2H), 2.67 (d, J = 4.4 Hz, 3H), 2.63 - 2.58 (m, 1H), 2.23 (s, 6H), 2.09 – 2.03 (m, 3H), 0.84 (d, J = 6.8 Hz, 6H). [00317] Example 12: Synthesis of 2-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-1-(oxetan-3-ylmet hyl)-2-oxo-1,2-dihydroquinolin-3- yl)oxy)-N-methylacetamide (7) and 2-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-2-(oxetan-3-ylmet hoxy)quinolin-3-yl)oxy)-N- methylacetamide (58) [00318] Methyl 2-[[6-[[3-chloro-5-cyano-6-[(3S,5R)-4,4-difluoro-3,5-dimethy l-1-piperidyl]-2- pyridyl] amino]-1-(oxetan-3-ylmethyl)-2-oxo-3-quinolyl]oxy]acetate and methyl 2-((6-((3-chloro- 5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethylpiperidin-1-yl)p yridin-2-yl)amino)-2-(oxetan-3- ylmethoxy)quinolin-3-yl)oxy)acetate [00319] To a solution of methyl 2-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-2-oxo-1,2-dihydro quinolin-3-yl)oxy)acetate (500 mg, 939.96 µmol) and K2CO3 (259.82 mg, 1.88 mmol) in DMSO (6 mL) was added 3- (iodomethyl)oxetane (223.34 mg, 1.13 mmol), and the reaction mixture was stirred at 80°C for 12 hr. The reaction mixture was treated with water (9 mL), then a precipitate formed, the suspension was filtered and the filter cake was collected and dried in vacuo to give the mixture of methyl 2- [[6-[[3-chloro-5-cyano-6-[(3S,5R)-4,4-difluoro-3,5-dimethyl- 1-piperidyl]-2-pyridyl]amino]-1- (oxetan-3-ylmethyl)-2-oxo-3-quinolyl]oxy]acetate and methyl 2-((6-((3-chloro-5-cyano-6- ((3R,5S)-4,4-difluoro-3,5-dimethylpiperidin-1-yl)pyridin-2-y l)amino)-2-(oxetan-3- ylmethoxy)quinolin-3-yl)oxy)acetate as a brown solid (500 mg, crude). [00320] 2-((6-((3-Chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethy lpiperidin-1-yl)pyridin- 2-yl)amino)-1-(oxetan-3-ylmethyl)-2-oxo-1,2-dihydroquinolin- 3-yl)oxy)-N-methylacetamide and 2-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethy lpiperidin-1-yl)pyridin-2- yl)amino)-2-(oxetan-3-ylmethoxy)quinolin-3-yl)oxy)-N-methyla cetamide [00321] A mixture of methyl 2-[[6-[[3-chloro-5-cyano-6-[(3S,5R)-4,4-difluoro-3,5-dimethy l-1- piperidyl]-2-pyridyl]amino]-1-(oxetan-3-ylmethyl)-2-oxo-3-qu inolyl]oxy]acetate and methyl 2- ((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethylp iperidin-1-yl)pyridin-2-yl)amino)- 2-(oxetan-3-ylmethoxy)quinolin-3-yl)oxy)acetate (200 mg, 332.21 µmol) and MeNH 2 (25.79 mg, 332.21 µmol, 10 mL, 40% purity in H 2 O) in EtOH (10 mL) was stirred at 70°C for 12 hr. The reaction mixture was concentrated in vacuo and then dissolved with DMSO (1.5 mL) and purified by prep-HPLC (column: Waters Xbridge Prep OBD C18150*40mm*10µm;mobile phase: [water( NH4HCO3)-ACN];B%: 35%-65%,8min) to give the two title compounds. [00322] 2-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethy lpiperidin-1-yl)pyridin- 2-yl)amino)-1-(oxetan-3-ylmethyl)-2-oxo-1,2-dihydroquinolin- 3-yl)oxy)-N-methylacetamide (7) [00323] The title compound was isolated as a white solid (45 mg, 74.79 µmol, 23% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.13 (s, 1H), 7.99 (s, 1H), 7.98 - 7.92 (d, J = 4.4 Hz, 1H), 7.80 - 7.74 (d, J = 2.4 Hz, 1H), 7.64 - 7.58 (m, 1H), 7.57 - 7.51 (m, 1H), 7.22 (m, 1H), 4.66 (d, J = 7.0 Hz, 2H), 4.62 - 4.56 (m, 2H), 4.55 - 4.49 (m, 4H), 4.17 - 4.08 (m, 2H), 3.43 (m, 1H), 2.86 - 2.72 (m, 2H), 2.67 (d, J = 4.8 Hz, 3H), 2.15 - 1.97 (m, 2H), 0.84 (d, J = 6.4 Hz, 6H). [00324] 2-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethy lpiperidin-1-yl)pyridin- 2-yl)amino)-2-(oxetan-3-ylmethoxy)quinolin-3-yl)oxy)-N-methy lacetamide (58) [00325] The title compound was isolated as a white solid (45 mg, 74.79 µmol, 23% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.16 (m, 1H), 8.01 (m, 1H), 7.91 - 7.85 (m, 2H), 7.74 - 7.64 (m, 2H), 7.49 (s, 1H), 4.78 - 4.72 (m, 2H), 4.67 (d, J = 6.8 Hz, 2H), 4.63 (s, 2H), 4.51 (t, J = 6.0 Hz, 2H), 4.20 - 4.12 (d, J = 12.4 Hz, 2H), 3.51 - 3.42 (m, 1H), 2.80 (t, J = 12.4 Hz, 2H), 2.66 (d, J = 4.8 Hz, 3H), 2.15 - 1.99 (m, 2H), 0.84 (d, J = 6.8 Hz, 6H). [00326] Example 13: Synthesis of 2-((3S,5R)-3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5- chloro-6-((3-(2-(1-hydroxycyclopropyl)ethyl)-1-methyl-2-oxo- 2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile (59) [00327] 2,5-Dichloro-6-((1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imida zol-5-yl)amino) nicotinonitrile [00328] A flask with mixture of 5-amino-1-methyl-1H-benzo[d]imidazol-2(3H)-one (2 g, 12.26 mmol), 2,5,6-trichloropyridine-3-carbonitrile (2.54 g, 12.26 mmol) and DIEA (3.17 g, 24.51 mmol, 4.27 mL) in DMSO (20 mL) was degassed and purged with N2 for 3 times, and then the mixture was stirred at 80°C for 2 hr under N2 atmosphere. Water (50 mL) was added to the mixture, forming a precipitate which was filtered, the filter cake was dried under reduced pressure to give the title compound as a brown solid (4g, 88% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 3.28 (s, 3H), 7.06 - 7.09 (m, 1H), 7.13 - 7.17 (m, 1H), 7.20 (d, J = 1.71 Hz, 1H), 8.32 (s, 1H), 9.43 (s, 1H), 10.90 (s, 1H). [00329] 1-(2-Bromoethyl)cyclopropanol [00330] To a solution of methyl 3-bromopropanoate (10 g, 59.88 mmol, 6.54 mL) and tetraisopropoxytitanium (17.02 g, 59.88 mmol, 17.67 mL) in THF (400 mL) was added EtMgBr (3 M, 43.91 mL) (3 M solution in diethyl ether) dropwise at 0°C under N 2 . The mixture was stirred at 20°C for 3 hr. The reaction mixture was quenched with saturated ammonium chloride solution (600 mL). Then the mixture was added to Celite® and filtered to give the filtrate. The filtrate was extracted with EtOAc (3 x 500 mL). The combined organic phase was dried with anhydrous Na 2 SO 4 , filtered and concentrated in vacuo. The residue was purified by column chromatography (SiO2, Petroleum ether/Ethyl acetate = 0/1 to 10/1) to give the title compound as a yellow oil (7 g, 42.42 mmol, 35% yield). 1 H NMR (400 MHz, DMSO-d6) δ 5.15 (s, 1H), 3.61 (t, J = 7.6 Hz, 2H), 1.99 (t, J = 7.6 Hz, 2H), 0.56 (dd, J = 6.8, 4.8 Hz, 1H), 0.43 (dd, J = 6.4, 4.4 Hz, 1H). [00331] 2,5-Dichloro-6-((3-(2-(1-hydroxycyclopropyl)ethyl)-1-methyl- 2-oxo-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile [00332] A flask with solution of 2,5-dichloro-6-((1-methyl-2-oxo-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile (1.5 g, 4.49 mmol), 1-(2-bromoethyl)cyclopropanol (1.48 g, 8.98 mmol), K2CO3 (1.24 g, 8.98 mmol) and KI (372.58 mg, 2.24 mmol) in DMSO (15 mL) was degassed and purged with N 2 for 3 times, then the mixture was stirred at 100°C for 12 hr under N 2 atmosphere. The mixture was concentrated in vacuo without further work-up. The residue was purified by prep-HPLC (column: Xtimate C1810µm 250mm*80mm; mobile phase: [water(NH4HCO3)-ACN]; B%: 35%-65%, 20min) to give the title compound as a yellow solid (600 mg, 1.42 mmol, 32% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 0.27 - 0.33 (m, 2H), 0.51 - 0.57 (m, 2H), 1.76 - 1.82 (m, 2H), 3.34 (s, 3H), 3.95 - 4.03 (m, 2H), 5.22 (s, 1H), 7.14 - 7.17 (m, 1H), 7.18 - 7.21 (m, 1H), 7.36 (d, J = 1.63 Hz, 1H), 8.35 (s, 1H), 9.53 (s, 1H). [00333] 5-Chloro-2-((3S,5R)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluor o-5-methylpiperidin-1- yl)-6-((3-(2-(1-hydroxycyclopropyl)ethyl)-1-methyl-2-oxo-2,3 -dihydro-1H-benzo[d]imidazol-5- yl)amino)nicotinonitrile [00334] A flask with solution of 2,5-dichloro-6-((3-(2-(1-hydroxycyclopropyl)ethyl)-1-methyl- 2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonit rile (150 mg, 358.61 µmol), 2- [(3R,5S)-4,4-difluoro-5-methyl-3-piperidyl]isoindoline-1,3-d ione (150.76 mg, 537.92 µmol) and DIEA (231.74 mg, 1.79 mmol, 312.31 µL) in DMSO (1.5 mL) was degassed and purged with N2 for 3 times, and then the mixture was stirred at 80°C for 6 h under N2 atmosphere. The mixture was concentrated in vacuo without further work-up. The residue was purified by prep-HPLC (column: Waters Xbridge BEH C18100*30mm*10µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 40%-70%, 8min) to give the title compound as a yellow solid (90 mg, 28% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 0.21 - 0.29 (m, 2H), 0.49 (br d, J = 5.13 Hz, 2H), 0.84 - 0.89 (m, 3H), 1.17 (t, J = 7.09 Hz, 2H), 1.62 - 1.76 (m, 2H), 2.13 - 2.28 (m, 1H), 2.80 - 2.86 (m, 3H), 3.11 - 3.20 (m, 1H), 3.77 - 3.84 (m, 2H), 4.14 - 4.38 (m, 4H), 5.19 (s, 1H), 6.82 (d, J = 8.34 Hz, 1H), 7.05 (dd, J = 8.34, 1.55 Hz, 1H), 7.19 (d, J = 1.79 Hz, 1H), 7.70 - 7.83 (m, 2H), 7.85 - 7.91 (m, 2H), 8.02 (s, 1H), 9.11 (s, 1H). [00335] 2-((3S,5R)-3-Amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-ch loro-6-((3-(2-(1- hydroxycyclopropyl)ethyl)-1-methyl-2-oxo-2,3-dihydro-1H-benz o[d]imidazol-5- yl)amino)nicotinonitrile (59) [00336] To a solution of 5-chloro-2-((3R,5S)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluor o-5- methylpiperidin-1-yl)-6-((3-(2-(1-hydroxycyclopropyl)ethyl)- 1-methyl-2-oxo-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile (90 mg, 135.93 µmol) in EtOH (4 mL) was added MeNH2/H2O (4 mL, 40% in water). The mixture was stirred at 70°C for 1 hr. The mixture was concentrated in vacuo without further work-up. The residue was purified by prep-HPLC (column: Waters Xbridge BEH C18100*30mm*10µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 30%-60%, 8min) to give the title compound as a white solid (25 mg, 46.52 µmol, 34% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d6) δ 0.22 - 0.31 (m, 2H), 0.46 - 0.56 (m, 2H), 0.79 (d, J = 6.72 Hz, 3H), 1.60 - 1.71 (m, 2H), 1.73 - 1.80 (m, 2H), 1.94 - 2.13 (m, 1H), 2.76 - 2.92 (m, 2H), 3.33 (s, 3H), 4.00 (br t, J = 7.64 Hz, 2H), 4.14 - 4.24 (m, 1H), 5.27 (s, 1H), 7.13 (d, J = 8.44 Hz, 1H), 7.23 (dd, J = 8.44, 1.83 Hz, 1H), 7.35 (d, J = 1.83 Hz, 1H), 7.96 (s, 1H), 8.97 (s, 1H). [00337] The absolute configuration of compound 59 was randomly assigned based on the amino group and methyl group being in cis-conformation. [00338] Example 14: Synthesis of 2-[(3R,5S)-3-amino-4,4-difluoro-5-methyl-1-piperidyl]-5- fluoro-6-[[1-methyl-2-oxo-3-[[(R)-2-oxooxazolidin-4-yl]methy l]benzimidazol-5- yl]amino]pyridine-3-carbonitrile (60) and 2-((3R,5S)-3-amino-4,4-difluoro-5-methylpiperidin-1- yl)-5-fluoro-6-((1-methyl-2-oxo-3-(((S)-2-oxooxazolidin-4-yl )methyl)-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile (61) [00339] (2-Oxooxazolidin-4-yl)methyl 4-methylbenzenesulfonate [00340] To a solution of 4-(hydroxymethyl)oxazolidin-2-one (12.5 g, 106.74 mmol) and DMAP (26.08 g, 213.49 mmol) in DCM (500 mL) was added 4-methylbenzenesulfonyl chloride (24.42 g, 128.09 mmol) at 0°C . The mixture was stirred at 0°C for 1 hr and then warmed up to 15°C for 1 hr. The reaction mixture was washed with 1N HCl (1 L), H2O (1 L), sat. NaHCO3 (1 L), sat. NaCl (1 L), dried over anhydrous Na2SO4 and concentrated in vacuo to give a residue which was purified by column chromatography (SiO 2 , Petroleum ether/Ethyl acetate = 5/1 to 0/1) to give the title compound as a white solid (45 g, 159.24 mmol, 75% yield, 96% purity). 1 H NMR (400 MHz, MeCN-d3) δ 7.79 (d, J = 8 Hz, 2H), 7.45 (d, J = 8 Hz, 2H), 5.99 (br s, 1H), 4.32 - 4.40 (m, 1H), 3.93 - 4.07 (m, 4H), 2.45 (s, 3H). [00341] (S)-(2-Oxooxazolidin-4-yl)methyl 4-methylbenzenesulfonate and (R)-(2-oxooxazolidin- 4-yl)methyl 4-methylbenzenesulfonate [00342] Racemic (2-oxooxazolidin-4-yl)methyl 4-methylbenzenesulfonate (10 g, 36.86 mmol) was separated with SFC (column: Phenomenex-Cellulose-2 (250mm*50mm,10µm); mobile phase: [0.1%NH3H2O EtOH]; B%: 60%-60%, 7.7min) to give two enantiopure compounds. (S)- (2-oxooxazolidin-4-yl)methyl 4-methylbenzenesulfonate as a yellow solid (4.9 g, 17.70 mmol, 48% yield, 98% purity). 1 H NMR (400 MHz, MeCN-d 3 ) δ 7.80 (d, J = 8 Hz, 2H), 7.46 (d, J = 8 Hz, 2H), 5.95 (br s, 1H), 4.32 - 4.40 (m, 1H), 3.93 - 4.07 (m, 4H), 2.45 (s, 3H). (R)-(2- oxooxazolidin-4-yl)methyl 4-methylbenzenesulfonate as a yellow solid (4.9 g, 17.70 mmol, 48% yield, 98% purity). 1 H NMR (400 MHz, MeCN-d 3 ) δ 7.79 (d, J = 8.34 Hz, 2H), 7.45 (d, J = 8.11 Hz, 2H), 5.98 (br s, 1H), 4.31 - 4.41 (m, 1H), 3.92 - 4.08 (m, 4H), 2.45 (s, 3H). [00343] (R)-4-[(3-Methyl-6-nitro-2-oxo-benzimidazol-1-yl)methyl]oxaz olidin-2-one [00344] A flask with mixture of 3-methyl-6-nitro-1H-benzimidazol-2-one (500 mg, 2.59 mmol), [(S)-2-oxooxazolidin-4-yl]methyl 4-methylbenzenesulfonate (842.69 mg, 3.11 mmol), K 2 CO 3 (715.52 mg, 5.18 mmol) and KI (214.85 mg, 1.29 mmol) in DMSO (10 mL) was degassed and purged with N2 for 3 times, and then the mixture was stirred at 80°C for 3 hr under N2 atmosphere. The reaction mixture was treated with water (20 mL), forming a precipitate that was filtered and the filter cake was washed with EtOAc (10 mL) and dried under reduced pressure to give the title compound a black solid (600 mg, 2.03 mmol, 79% yield, 99% purity). [00345] (R)-4-[(6-Amino-3-methyl-2-oxo-benzimidazol-1-yl)methyl]oxaz olidin-2-one [00346] To a solution of (R)-4-[(3-methyl-6-nitro-2-oxo-benzimidazol-1-yl)methyl]oxaz olidin- 2-one (600 mg, 2.05 mmol) in DMF (2 mL) was added Pd/C (200 mg, 10% purity) under Ar. The suspension was degassed under vacuum and purged with H2 for 3 times. The mixture was stirred under H 2 (50 psi) at 60°C for 12 hours. The reaction mixture was filtered, and the filtrate was concentrated under reduced pressure to get a residue which was purified by column chromatography (SiO2, Ethyl acetate/Ethanol = 1/0 to 0/1) to give the title compound as a yellow solid (500 mg, 1.91 mmol, 93% yield). 1 H NMR (400 MHz, DMSO-d 6 ) δ 7.84 (s, 1 H), 6.89 (d, J = 8 Hz, 1H), 6.61 (d, J = 1.8 Hz, 1H), 6.48 (dd, J = 8, 2 Hz, 1H), 6.15 (br s, 2H), 4.31 - 4.40 (m, 1H), 4.09 - 4.19 (m, 2H), 3.77 - 3.85 (m, 2H), 3.25 (s, 3H). [00347] 2-Chloro-5-fluoro-6-[[1-methyl-2-oxo-3-[[(R)-2-oxooxazolidin -4- yl]methyl]benzimidazol-5-yl]amino]pyridine-3-carbonitrile [00348] To a solution of (R)-4-[(6-amino-3-methyl-2-oxo-benzimidazol-1- yl)methyl]oxazolidin-2-one (500 mg, 1.91 mmol) and 2,6-dichloro-5-fluoro-pyridine-3- carbonitrile (364.12 mg, 1.91 mmol) in DMSO (10 mL) was added DIPEA (492.79 mg, 3.81 mmol, 664.13 µL). The mixture was stirred at 100°C for 2 hr. The mixture was treated with water (20 mL), forming a precipitate that was filtered and dried under reduce pressure to give the title compound as a brown solid (550 mg, 1.17 mmol, 62% yield, 89% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.99 (s, 1H), 8.14 (d, J = 10.4 Hz, 1H), 7.83 (s, 1H), 7.49 (d, J = 1.2 Hz, 1H), 7.25 (br dd, J = 8, 1.6 Hz, 1H), 7.15 (d, J = 8 Hz, 1H), 4.32 - 4.44 (m, 1H), 4.14 - 4.24 (m, 2H), 3.80 - 3.97 (m, 2H), 3.33 (br s, 3H). [00349] 2-((3R,5S)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluoro-5-methy lpiperidin-1-yl)-5-fluoro- 6-((1-methyl-2-oxo-3-(((R)-2-oxooxazolidin-4-yl)methyl)-2,3- dihydro-1H-benzo[d]imidazol-5- yl)amino)nicotinonitrile [00350] To a solution of 2-chloro-5-fluoro-6-[[1-methyl-2-oxo-3-[[(R)-2-oxooxazolidin -4- yl]methyl]benzimidazol-5-yl]amino]pyridine-3-carbonitrile (500 mg, 1.20 mmol), 2-[(3R,5S)-4,4- difluoro-5-methyl-3-piperidyl]isoindoline-1,3-dione (336.22 mg, 1.20 mmol) and Cs2CO3 (781.73 mg, 2.40 mmol) in dioxane (5 mL) was added rac-BINAP-Pd-G3 (119.05 mg, 119.96 µmol). The mixture was stirred at 90°C for 4 hr. The reaction mixture was filtered through a pad of Celite® and the filtrate concentrated under reduced pressure to give a residue which was purified by prep- HPLC (column: Waters Xbridge BEH C18100*30mm*10µm; mobile phase: [water(NH4HCO3)- ACN]; B%: 30%-60%, 8min) to give the title compound (150 mg, 19% yield, 98% purity). 1 H NMR (400 MHz, MeCN-d 3 ) δ 7.87 (br s, 1H), 7.83 (dd, J = 5.46, 3.07 Hz, 2H), 7.67 - 7.76 (m, 2H), 7.51 (d, J = 10.54 Hz, 1H), 7.09 - 7.22 (m, 2H), 6.75 (d, J = 8.28 Hz, 1H), 6.08 (s, 1H), 4.48 - 4.57 (m, 1H), 4.33 - 4.47 (m, 2H), 4.24 - 4.32 (m, 3H), 4.17 - 4.23 (m, 2H), 3.69 - 3.87 (m, 2H), 3.21 (dd, J = 14.12, 12.11 Hz, 1H), 2.84 (s, 3H), 0.97 (d, J = 6.78 Hz, 3H). [00351] 2-[(3R,5S)-3-Amino-4,4-difluoro-5-methyl-1-piperidyl]-5-fluo ro-6-[[1-methyl-2-oxo- 3-[[(R)-2-oxooxazolidin-4-yl]methyl]benzimidazol-5-yl]amino] pyridine-3-carbonitrile (60) [00352] To a solution of 2-[(3R,5S)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluoro-5-methy l-1- piperidyl]-5-fluoro-6-[[1-methyl-2-oxo-3-[[(R)-2-oxooxazolid in-4-yl]methyl] benzimidazol-5- yl]amino]pyridine-3-carbonitrile (100 mg, 151.38 µmol) in EtOH (3.5 mL) was added MeNH2 (3.5 mL, 40% purity). The mixture was stirred at 70°C for 1 hr. The reaction mixture was concentrated under reduced pressure to give a residue which was purified by prep-HPLC (column: Waters Xbridge BEH C18100*30mm*10µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 25%- 45%, 8min) to the title compound as a white solid (10 mg, 18.66 µmol, 12% yield, 99% purity). 1 H NMR (400 MHz, MeCN-d3) δ 7.81 (br d, J = 1.13 Hz, 1H), 7.55 (d, J = 1.88 Hz, 1H), 7.46 - 7.50 (m, 1H), 7.22 (dd, J = 8.44, 1.94 Hz, 1H), 7.04 (d, J = 8.50 Hz, 1H), 6.36 (br s, 1 H), 4.36 - 4.46 (m, 1H), 4.22 - 4.32 (m, 2H), 4.14 - 4.21 (m, 1H), 4.01 - 4.08 (m, 1H), 3.94 - 4.00 (m, 2H), 3.36 (s, 3H), 3.00 - 3.16 (m, 1H), 2.78 - 2.90 (m, 2H), 2.18 - 2.25 (m, 1H), 0.98 (d, J = 6.88 Hz, 3H). [00353] (S)-4-((3-Methyl-6-nitro-2-oxo-2,3-dihydro-1H-benzo[d]imidaz ol-1- yl)methyl)oxazolidin-2-one [00354] A flask with mixture of 3-methyl-6-nitro-1H-benzimidazol-2-one (500 mg, 2.59 mmol), [(4R)-2-oxooxazolidin-4-yl]methyl 4-methylbenzenesulfonate (842.69 mg, 3.11 mmol), K2CO3 (715.52 mg, 5.18 mmol) and KI (214.85 mg, 1.29 mmol) in DMSO (10 mL) was degassed and purged with N 2 for 3 times, and then the mixture was stirred at 80°C for 3 hr under N 2 atmosphere. The reaction mixture was treated with water (20 mL), forming a precipitate, which was filtered and the filter cake was washed with EtOAc (10mL) then was dried under reduced pressure to give the title compound as a black solid (600 mg, 2.03 mmol, 79% yield, 99% purity). [00355] (S)-4-((6-Amino-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidaz ol-1- yl)methyl)oxazolidin-2-one [00356] To a solution of (4R)-4-[(3-methyl-6-nitro-2-oxo-benzimidazol-1- yl)methyl]oxazolidin-2-one (600 mg, 2.05 mmol) in DMF (2 mL) was added Pd/C (200 mg, 10% purity) under Ar. The flask was degassed and purged with H2 for 3 times. The mixture was stirred under H 2 (50 psi) at 60°C for 10 hours. The reaction mixture was filtered, and the filtrate was concentrated under reduced pressure to give a residue which was purified by column chromatography (SiO2, Ethyl acetate/Ethanol = 1/0 to 0/1) to give the title compound as a yellow solid (500 mg, 1.70 mmol, 83% yield, 89% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 7.85 (s, 1H), 6.80 (d, J = 8.23 Hz, 1H), 6.47 (d, J = 1.67 Hz, 1H), 6.34 (dd, J = 8.23, 1.79 Hz, 1H), 4.76 (br s, 2H), 4.30 - 4.39 (m, 1H), 4.07 - 4.20 (m, 2H), 3.78 (br d, J = 5.72 Hz, 2H), 3.23 (s, 3H). [00357] (S)-2-Chloro-5-fluoro-6-((1-methyl-2-oxo-3-((2-oxooxazolidin -4-yl)methyl)-2,3- dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile [00358] To a solution of (4S)-4-[(6-amino-3-methyl-2-oxo-benzimidazol-1- yl)methyl]oxazolidin-2-one (500 mg, 1.91 mmol) and 2,6-dichloro-5-fluoro-pyridine-3- carbonitrile (364.12 mg, 1.91 mmol) in DMSO (10 mL) was added DIEA (492.79 mg, 3.81 mmol, 664.13 µL). The mixture was stirred at 100°C for 2 hr. The mixture was treated with water (20mL), forming a precipitate which was filtered and dried under reduced pressure to give the title compound as a brown solid (560 mg, 1.25 mmol, 66% yield, 93% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.98 (br s, 1H), 8.13 (d, J = 10.61 Hz, 1H), 7.83 (s, 1H), 7.49 (s, 1H), 7.10 - 7.33 (m, 2H), 4.31 - 4.46 (m, 1H), 4.19 (br d, J = 5.25 Hz, 2H), 3.88 (br dd, J = 12.22, 5.30 Hz, 2H), 3.33 (s, 3 H). [00359] 2-((3R,5S)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluoro-5-methy lpiperidin-1-yl)-5-fluoro- 6-((1-methyl-2-oxo-3-(((S)-2-oxooxazolidin-4-yl)methyl)-2,3- dihydro-1H-benzo[d]imidazol-5- yl)amino)nicotinonitrile [00360] To a solution of 2-chloro-5-fluoro-6-[[1-methyl-2-oxo-3-[[(4S)-2-oxooxazolidi n-4- yl]methyl]benzimidazol-5-yl]amino]pyridine-3-carbonitrile (500 mg, 1.20 mmol), 2-[(3R,5S)-4,4- difluoro-5-methyl-3-piperidyl]isoindoline-1,3-dione (336.22 mg, 1.20 mmol) and Cs2CO3 (781.73 mg, 2.40 mmol) in dioxane (5 mL) was added rac-BINAP-Pd-G3 (119.05 mg, 119.96 µmol). The mixture was stirred at 90°C for 4 hr. The reaction mixture was filtered and the filtrate was concentrated under reduced pressure to give a residue which was purified by prep-HPLC (column: Waters Xbridge BEH C18100*30mm*10µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 30%- 60%, 8min) to give the title compound as a yellow solid (120 mg, 174.39 µmol, 15% yield, 96% purity). 1 H NMR (400 MHz, MeCN-d 3 ) δ 7.90 (br d, J = 1.00 Hz, 1H), 7.83 (dd, J = 5.46, 3.07 Hz, 2H), 7.74 (br s, 2H), 7.51 (d, J = 10.54 Hz, 1H), 7.21 (d, J = 1.88 Hz, 1H), 7.10 (dd, J = 8.28, 1.76 Hz, 1H), 6.81 (d, J = 8.41 Hz, 1H), 5.94 (s, 1H), 4.45 - 4.57 (m, 1H), 4.32 - 4.44 (m, 2H), 4.22 - 4.32 (m, 3H), 4.11 - 4.22 (m, 2H), 3.75 (dd, J = 14.56, 6.15 Hz, 1H), 3.60 - 3.68 (m, 1H), 3.15 - 3.25 (m, 1H), 2.98 (s, 3H), 0.97 (d, J = 6.78 Hz, 3H). [00361] 2-((3R,5S)-3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-fl uoro-6-((1-methyl-2-oxo- 3-(((S)-2-oxooxazolidin-4-yl)methyl)-2,3-dihydro-1H-benzo[d] imidazol-5- yl)amino)nicotinonitrile (61) [00362] To a solution of 2-[(3R,5S)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluoro-5-methy l-1- piperidyl]-5-fluoro-6-[[1-methyl-2-oxo-3-[[(4S)-2-oxooxazoli din-4-yl]methyl]benzimidazol-5- yl]amino]pyridine-3-carbonitrile (100.00 mg, 151.38 µmol) in EtOH (5 mL) was added MeNH 2 (5 mL, 40% purity). The mixture was stirred at 70°C for 1 hr. The reaction mixture was concentrated under reduced pressure to give a residue which was purified by prep-HPLC (column: Phenomenex C18 75*30mm*3µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 25%-45%, 8min) to give the title compound as a white solid (10 mg, 18.66 µmol, 12% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.45 (br s, 1H), 7.78 - 7.90 (m, 2H), 7.55 (s, 1H), 7.26 - 7.33 (m, 1H), 7.12 (d, J = 8.34 Hz, 1H), 4.33 - 4.41 (m, 1H), 4.16 - 4.25 (m, 2H), 4.06 - 4.15 (m, 1H), 3.94 - 3.99 (m, 1H), 3.91 (br s, 2H), 3.33 (br s, 3H), 2.89 - 3.04 (m, 1H), 2.70 - 2.84 (m, 2H), 2.08 - 2.20 (m, 1H), 1.65 - 1.79 (m, 2H), 0.88 (br d, J = 6.68 Hz, 3H). [00363] The absolute configurations of compounds 60 & 61 were randomly assigned based on the amino group and methyl group being in cis-conformation.
[00364] Example 15: Synthesis of 5-chloro-2-((3R,5S)-4,4-difluoro-3,5-dimethylpiperidin-1- yl)-6-((1-methyl-3-((3-methyloxetan-3-yl)methoxy)-2-oxo-1,2- dihydroquinolin-6- yl)amino)nicotinonitrile (6) [00365] Oxetan-2-ylmethyl 4-methylbenzenesulfonate [00366] To a solution of oxetan-2-ylmethanol (200 mg, 2.27 mmol) and 4- methylbenzenesulfonyl chloride (519.33 mg, 2.72 mmol) in DCM (3 mL) was added DMAP (27.73 mg, 227.00 µmol) and TEA (459.40 mg, 4.54 mmol, 631.92 µL). The mixture was stirred at 20°C for 12 hr. The mixture was concentrated under reduced pressure to give a residue which was purified by prep-TLC (SiO2, Petroleum ether: Ethyl acetate = 2:1) to give the title compound as a white solid (440 mg, 1.82 mmol, 80% yield). 1 H NMR (400MHz, CDCl 3 ) δ 7.83 (d, J = 8.4 Hz, 2H), 7.36 (d, J = 8.0 Hz, 2H), 4.96-4.90 (m, 1H), 4.64-4.58 (m, 1H), 4.54-4.89 (m, 1H), 4.16 (d, J = 4.0 Hz, 2H), 2.76-2.67 (m, 1H), 2.62-2.53 (m, 1H), 2.46 (s, 3H). [00367] Methyl 2-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethy lpiperidin-1- yl)pyridin-2-yl)amino)-1-(oxetan-2-ylmethyl)-2-oxo-1,2-dihyd roquinolin-3-yl)oxy)acetate [00368] A mixture of methyl 2-[[6-[[3-chloro-5-cyano-6-[(3S,5R)-4,4-difluoro-3,5-dimethy l-1- piperidyl]-2-pyridyl]amino]-2-oxo-1H-quinolin-3-yl]oxy]aceta te (100 mg, 187.99 µmol), oxetan- 2-ylmethyl 4-methylbenzenesulfonate (136.65 mg, 563.98 µmol), K 2 CO 3 (77.94 mg, 563.98 µmol), KI (15.60 mg, 94.00 µmol) in DMSO (1 mL was stirred at 80°C for 12 hr under N2 atmosphere. Water (3 mL) was added, forming a precipitate which was filtered and washed with H 2 O (3 mL) and ethyl acetate (5 mL) and the solid was dried under reduced pressure to give the title compound as a brown solid (100 mg, crude). [00369] 2-((6-((3-Chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethy lpiperidin-1-yl)pyridin- 2-yl)amino)-1-(oxetan-2-ylmethyl)-2-oxo-1,2-dihydroquinolin- 3-yl)oxy)-N-methylacetamide (6) [00370] To a mixture of methyl 2-[[6-[[3-chloro-5-cyano-6-[(3S,5R)-4,4-difluoro-3,5-dimethy l- 1-piperidyl]-2-pyridyl]amino]-1-(oxetan-2-ylmethyl)-2-oxo-3- quinolyl]oxy]acetate (100 mg, 166.11 µmol) in EtOH (5 mL) was added methenamine (5 mL, 40% purity in H 2 O). The mixture was stirred at 70°C for 12 hr. The reaction mixture was concentrated under reduced pressure to give a residue which was purified by prep-HPLC (column: Waters Xbridge BEH C18 100*25mm*5µm; mobile phase: [water( NH 4 HCO 3 )-ACN]; B%: 45%-75%,10min) to give the title compound as a white solid (5 mg, 7.51 µmol, 5% yield, 90% purity). 1 H NMR (400MHz, DMSO-d6) δ 9.12 (S, 1H), 7.99 (S, 1H), 7.94 (d, J = 4.4 Hz, 1H), 7.74 (d, J = 2.4 Hz, 1H), 7.69 (d, J = 9.2 Hz, 1H), 7.61 (dd, J = 2.4, 9.2 Hz, 1H), 7.24 (s, 1H), 5.05 - 5.01 (m, 1H), 4.68 - 4.50 (m, 2H), 4.54 (s, 2H), 4.50 - 4.40 (m, 2H), 4.14 (d, J = 12.8 Hz, 2H), 2.82 - 2.74 (m, 2H), 2.67 - 2.66 (m, 4H), 2.12 – 2.00 (m, 2H), 1.23 (s, 1H), 0.84 (d, J = 6.8 Hz, 6H). [00371] Example 16: Synthesis of 2-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-1-(3-hydroxypropy l)-2-oxo-1,2-dihydroquinolin-3- yl)oxy)-N-methylacetamide (18)
[00372] Methyl 2-((1-(3-((tert-butyldimethylsilyl)oxy)propyl)-6-((3-chloro- 5-cyano-6-((3R,5S)- 4,4-difluoro-3,5-dimethylpiperidin-1-yl)pyridin-2-yl)amino)- 2-oxo-1,2-dihydroquinolin-3- yl)oxy)acetate [00373] A mixture of methyl 2-[[6-[[3-chloro-5-cyano-6-[(3S,5R)-4,4-difluoro-3,5-dimethy l-1- piperidyl]-2-pyridyl]amino]-2-oxo-1H-quinolin-3-yl]oxy]aceta te (100 mg, 187.99 µmol), tert- butyl-(3-iodopropoxy)-dimethyl-silane (56.44 mg, 187.99 µmol, 5.41 µL), K2CO3 (51.96 mg, 375.98 µmol), in DMSO (2 mL) was stirred at 80°C for 12 hr. The mixture was cooled to 20°C and water (1 mL) was added, forming a precipitate which was filtered and the filter cake was washed with H2O (10 mL x2), EtOAc (10 mL x2), then the filter cake was concentrated to give the title compound as a yellow solid (150 mg, crude), which was used without purification. [00374] 2-((1-(3-((tert-Butyldimethylsilyl)oxy)propyl)-6-((3-chloro- 5-cyano-6-((3R,5S)-4,4- difluoro-3,5-dimethylpiperidin-1-yl)pyridin-2-yl)amino)-2-ox o-1,2-dihydroquinolin-3-yl)oxy)-N- methylacetamide [00375] A mixture of methyl 2-[[1-[3-[tert-butyl(dimethyl)silyl]oxypropyl]-6-[[3-chloro- 5- cyano-6-[(3S,5R)-4,4-difluoro-3,5-dimethyl-1-piperidyl]-2-py ridyl]amino]-2-oxo-3- quinolyl]oxy]acetate (150 mg, 85.19 µmol, 40% purity), MeNH2 (370.59 µmol, 9 mL, 40% purity in H 2 O) in EtOH (10 mL) was stirred at 70°C for 12 hr . The mixture was concentrated to give the title compound as a yellow solid (100 mg, 56.88 µmol, 67% yield, 40% purity), which was used without purification. [00376] 2-((6-((3-Chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethy lpiperidin-1-yl)pyridin- 2-yl)amino)-1-(3-hydroxypropyl)-2-oxo-1,2-dihydroquinolin-3- yl)oxy)-N-methylacetamide (18) [00377] To a solution of 2-[[1-[3-[tert-butyl(dimethyl)silyl]oxypropyl]-6-[[3-chloro- 5-cyano-6- [(3S,5R)-4,4-difluoro-3,5-dimethyl-1-piperidyl]-2-pyridyl]am ino]-2-oxo-3-quinolyl]oxy]-N- methyl-acetamide (100 mg, 142.19 µmol) in THF (2 mL) was added TBAF (1 M, 213.28 µL) and then the mixture was stirred at 20°C for 12 hr. The mixture was concentrated and the residue was purified directly with prep-HPLC (column: Phenomenex Luna 80*30mm*3µm;mobile phase: [water(HCl)-ACN];B%: 30%-60%,8min) to give the title compound as a white solid (6 mg, 9.50 µmol, 7% yield, 99% purity, HCl). 1 H NMR (400 MHz, DMSO-d6) δ ppm 9.08 - 9.18 (m, 1H), 7.95 - 8.04 (m, 2H), 7.78 (d, J = 2.38 Hz, 1 H), 7.61 - 7.68 (m, 1 H), 7.50 - 7.57 (m, 1H), 7.22 - 7.28 (m, 1H), 4.63 - 4.78 (m, 1H), 4.50 - 4.60 (m, 2H), 4.27 - 4.40 (m, 2H), 4.13 (br d, J = 12.51 Hz, 2H), 3.54 (br t, J = 5.69 Hz, 2H), 2.79 (br t, J = 12.76 Hz, 2H), 2.67 (d, J = 4.50 Hz, 3 H), 1.96 - 2.15 (m, 2H), 1.75 - 1.86 (m, 2H), 0.82 - 0.86 (m, 6H). [00378] Example 17: Synthesis of 2-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3-(2- hydroxyethyl)-5-methylpiperidin-1-yl)pyridin-2-yl)amino)-1-m ethyl-2-oxo-1,2-dihydroquinolin- 3-yl) oxy)-N-methylacetamide (62) and 2-((6-((3-chloro-5-cyano-6-((3S,5R)-4,4-difluoro-3-(2- hydroxyethyl)-5-methylpiperidin-1-yl)pyridin-2-yl)amino)-1-m ethyl-2-oxo-1,2-dihydroquinolin- 3-yl) oxy)-N-methylacetamide (63) [00379] 2-((3R,5S)-1-Benzyl-4,4-difluoro-5-methylpiperidin-3-yl)etha nol and 2-((3S,5R)-1- benzyl-4,4-difluoro-5-methylpiperidin-3-yl)ethanol [00380] 2-(1-Benzyl-4,4-difluoro-5-methyl-3-piperidyl)ethanol (1.2 g, 4.46 mmol) was separated by SFC (column: Phenomenex-Cellulose-2 (250mm*30mm,5µm);mobile phase: [n- Heptane-IPA (0.1%NH3.H2O)];B%: 10%-10%,12min) to give 2-[(3R,5S)-1-benzyl-4,4-difluoro- 5-methyl-3-piperidyl]ethanol as a colorless oil (540 mg, 1.98 mmol, 44% yield, 99% purity); 1 H NMR (400 MHz, DMSO-d 6 ) δ = 7.33 – 7.25 (m, 5H), 4.50 (t, J = 5.2 Hz, 1H), 3.58 – 3.50 (m, 1H), 3.47 – 3.33 (m, 3H), 2.95 (d, J = 10 Hz, 2H), 2.72 (d, J = 10 Hz, 2H), 2.20 – 2.04 (m, 2H), 1.91 - 1.81 (m, 3H), 1.25 - 1.19 (m, 1H), 0.87 (d, J = 6.8 Hz, 3H); and 2-[(3S,5R)-1-benzyl-4,4- difluoro-5-methyl-3-piperidyl]ethanol as a colorless oil (510 mg, 1.79 mmol, 40% yield, 94% purity); 1 H NMR (400 MHz, DMSO-d 6 ) δ 7.35 – 7.25 (m, 5H), 4.50 (t, J = 5.2 Hz, 1H), 3.58 – 3.50 (m, 1H), 3.47 – 3.33 (m, 3H), 2.95 (d, J = 10 Hz, 2H), 2.72 (d, J = 10 Hz, 2H), 2.20 – 2.04 (m, 2H), 1.91 - 1.81 (m, 3H), 1.25 - 1.19 (m, 1H), 0.87 (d, J = 6.8 Hz, 3H). [00381] 2-((3R,5S)-4,4-Difluoro-5-methylpiperidin-3-yl)ethanol [00382] To a solution of 2-[(3R, 5S)-1-benzyl-4, 4-difluoro-5-methyl-3-piperidyl]ethanol (200 mg, 742.59 µmol) in MeOH (2 mL) was added TFA (338.69 mg, 2.97 mmol, 219.93 µL) and Pd/C (10%, 50 mg) under Ar. The mixture was stirred under H2 (15 psi) at 60°C for 12 hours. The reaction mixture was filtered and the filtrate was concentrated to give the title compound as a yellow oil (140 mg, crude, TFA). 1 H NMR (400 MHz, MeOD-d4) δ 3.66 - 3.63 (m, 2H), 3.62 - 3.60 (m, 1H), 3.41 (d, J = 12 Hz, 1H), 2.99 - 2.86 (m, 2H), 2.50 - 2.33 (m, 2H), 2.09 – 2.00 (m, 1H), 1.52 - 1.43 (m, 1H), 1.09 (d, J = 6.8 Hz, 3H). [00383] 2- ((6- ((3- chloro- 5- cyano- 6- ((3R, 5S)- 4, 4- difluoro- 3-(2- hydroxyethyl)- 5- methylpiperidin-1-yl) pyridin-2-yl) amino) -1-methyl-2-oxo-1, 2-dihydroquinolin-3-yl) oxy)-N- methylacetamide (62) [00384] To a solution of 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-1-methyl-2-oxo -3- quinolyl]oxy]-N-methyl-acetamide (40 mg, 92.54 µmol) and 2-[(3R,5S)-4,4-difluoro-5-methyl-3- piperidyl]ethanol (54.27 mg, 185.07 µmol, TFA) in DMSO (0.5 mL) was added DIPEA (47.84 mg, 370.15 µmol, 64.47 µL). The mixture was stirred at 100°C for 3 hr. The mixture was concentrated under reduced pressure. The residue was purified by prep-HPLC (column: Phenomenex C1880*40mm*3µm; mobile phase: [water( NH4HCO3)-ACN]; B%: 30%-60%, 8 min) to give the title compound as a white solid (8 mg, 13.63 µmol, 15% yield, 98% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.19 (s, 1H), 8.06 (s, 1H), 8.00 ( d, J = 4.4 Hz, 1H), 7.83 (d, J = 2.4 Hz, 1H), 7.71 (dd, J = 2.4, 8.8 Hz, 1H), 7.39 (d, J = 9.2 Hz, 1H), 7.30 (s, 1H), 4.61 (s, 2H), 4.60 - 4.57 (m, 1H), 4.42 (d, J = 13.2 Hz, 1H), 4.17 ( d, J = 12.4 Hz, 1H), 3.74 (s, 3H), 2.90 - 2.76 (m, 2H), 2.73 (d, J = 4.8 Hz, 3H), 2.23 – 2.01 (m, 3H), 1.89 - 1.80 (m, 1H), 1.36 - 1.27 (m, 2H), 0.89 (d, J = 6.4 Hz, 3H). [00385] 2-((3S,5R)-4,4-Difluoro-5-methylpiperidin-3-yl)ethanol [00386] To a solution of 2-[(3S,5R)-1-benzyl-4,4-difluoro-5-methyl-3-piperidyl]ethano l (200 mg, 742.59 µmol) in MeOH (2 mL) was added TFA (338.69 mg, 2.97 mmol, 219.93 µL) and Pd/C (10%, 50mg) under Ar. The mixture was stirred under H2 (15 psi) at 60°C for 12 hours. The reaction mixture was filtered and the filtrate was concentrated to give the title compound as a yellow oil (120 mg, crude, TFA). 1 H NMR (400 MHz, MeOD-d4) δ 4.43 - 4.34 (m, 2H), 3.71-3.68 (m, 1H), 3.45 – 3.42 (m, 1H), 3.08 - 2.93 (m, 2H), 2.57-2.43 (m, 2H), 2.08 – 2.00 (m, 1H), 1.51 – 1.42 (m, 1H), 1.07 (d, J = 6.8 Hz, 3H). [00387] 2-((6-((3-chloro-5-cyano-6-((3S,5R)-4,4-difluoro-3-(2-hydrox yethyl)-5- methylpiperidin-1-yl)pyridin-2-yl)amino)-1-methyl-2-oxo-1,2- dihydroquinolin-3-yl)oxy)-N- methylacetamide (63) [00388] To a solution of 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-1-methyl-2-oxo -3- quinolyl]oxy]-N-methyl-acetamide (40 mg, 92.54 µmol) and 2-[(3S,5R)-4,4-difluoro-5-methyl-3- piperidyl]ethanol (54.27 mg, 185.07 µmol, TFA) in DMSO (0.5 mL) was added DIPEA (35.88 mg, 277.61 µmol, 48.35 µL). The mixture was stirred at 100°C for 3 hr. The mixture was purified by prep-HPLC (column: Waters Xbridge BEH C18 100*30mm*10µm; mobile phase: [water( NH4HCO3)-ACN]; B%: 25%-55%,8 min) to give the title compound as a white solid (11 mg, 18.78 µmol, 20% yield, 98% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.13 (s, 1H), 8.00 (s, 1H), 7.92 (d, J = 4.4 Hz, 1H), 7.77 (d, J = 2.4 Hz, 1H), 7.64 (dd, J = 2.4, 9.2 Hz, 1H), 7.48 (d, J = 9.2 Hz, 1H), 7.24 (s, 1H), 4.55 (s, 2H), 4.52 (t, J = 5.2 Hz, 1H), 4.36 (d, J = 14 Hz , 1H), 4.11 (d, J = 11.2 Hz, 1H), 3.68 (s, 3H), 2.83 - 2.72 (m, 2H), 2.66 (d, J = 4.8 Hz, 3H), 2.16 - 1.94 (m, 3H), 1.82-1.74 (m, 1H), 1.28 - 1.23 (m, 2H), 0.82 (d, J = 6.8 Hz, 3H). [00389] The absolute configurations of compounds 62 & 63 were randomly assigned based on the aliphatic alcohol group and methyl group being in cis-conformation. [00390] Example 18: Synthesis of 2-((6-((3-chloro-5-cyano-6-((3R,4r,5S)-4-fluoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-1-methyl-2-oxo-1, 2-dihydroquinolin-3-yl)oxy)-N- methylacetamide (64) [00391] N-Methyl-2-((1-methyl-6-nitro-2-oxo-1,2-dihydroquinolin-3-yl )oxy)acetamide [00392] A mixture of 3-hydroxy-1-methyl-6-nitroquinolin-2(1H)-one (5 g, 22.71 mmol), 2- bromo-N-methyl-acetamide (4.14 g, 27.25 mmol), Cs2CO3 (14.80 g, 45.42 mmol) in DMF (100 mL) was stirred at 20°C for 12 hr. The mixture was then poured into water (150 mL), the precipitated solid was filtered and washed with H 2 O (200 mL) and MTBE (200 mL), then the solid was dried under reduced pressure to give the title compound as a yellow solid (3.3 g, 10.51 mmol, 46% yield, 93% purity). [00393] 2-((6-Amino-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-m ethylacetamide [00394] To a solution of N-methyl-2-((1-methyl-6-nitro-2-oxo-1,2-dihydroquinolin-3- yl)oxy)acetamide (3.3 g, 11.33 mmol) in DMF (60 mL) was added Pd/C (1 g, 11.33 mmol, 10% purity) under argon atmosphere. The mixture was stirred under H 2 (50 Psi) at 50°C for 12 hr. The reaction mixture was filtered and the filtrate was concentrated under reduced pressure to give the title compound as a yellow solid (1.8 g, 6.13 mmol, 54% yield, 89% purity). [00395] 2-((6-((3,6-Dichloro-5-cyanopyridin-2-yl)amino)-1-methyl-2-o xo-1,2-dihydroquinolin- 3-yl)oxy)-N-methylacetamide [00396] A mixture of 2-((6-amino-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N- methylacetamide (1 g, 3.83 mmol), 2,5,6-trichloropyridine-3-carbonitrile (793.97 mg, 3.83 mmol), DIEA (989.32 mg, 7.65 mmol, 1.33 mL) in DMF (20 mL) was degassed and purged with N2 for 3 times, and then the mixture was stirred at 100°C for 12 hr under N2 atmosphere. The mixture was cooled to 20°C. Water (10 mL) was added, forming a precipitate which was filtered and the filter cake was washed by EtOAc (20 mL) and dried in vacuo to give the title compound as a white solid (1.1 g, 1.35 mmol, 35% yield, 53% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.64 (s, 1H), 8.38 (s, 1H), 7.94 (dd, J = 6.60, 1.59 Hz, 1H), 7.74 (s, 1H), 7.66 (d, J = 8.93 Hz, 1H), 7.53 (d, J = 9.29 Hz, 1H), 7.22 (s, 1H), 4.58 (s, 2H), 3.69 (s, 3H), 2.66 (s, 3H). [00397] 2-((6-((3-Chloro-5-cyano-6-((3R,4r,5S)-4-fluoro-3,5-dimethyl piperidin-1-yl)pyridin-2- yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-met hylacetamide (64) [00398] To a solution of 2-((6-((3,6-dichloro-5-cyanopyridin-2-yl)amino)-1-methyl-2-o xo-1,2- dihydroquinolin-3-yl)oxy)-N-methylacetamide (50 mg, 115.67 µmol) and (3S,4R,5R)-4-fluoro- 3,5-dimethyl-piperidine (38.78 mg, 231.34 µmol, HCl) in DMSO (1 mL) was added DIEA (74.75 mg, 578.36 µmol, 100.74 µL) under N2. The mixture was stirred at 100°C for 12 hr. The mixture was purified by prep-HPLC (column: Phenomenex C18 80*40mm*3µm;mobile phase: [water( NH 4 HCO 3 )-ACN];B%: 35%-65%,8min) to give the title compound as a white solid (12 mg, 22.07 µmol, 19% yield, 97% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.09 (s, 1H), 7.92 - 7.97 (m, 2H), 7.81 (d, J = 2.20 Hz, 1H), 7.64 (dd, J = 8.99, 2.38 Hz, 1H), 7.46 (d, J = 9.05 Hz, 1H), 7.23 (s, 1H), 4.53 (s, 2H), 4.09 - 4.18 (m, 2H), 3.80 - 3.99 (m, 1H), 3.67 (s, 3H), 2.64 - 2.71 (m, 5H), 1.73 (dd, J = 9.29, 4.65 Hz, 2H), 0.87 (d, J = 6.48 Hz, 6H). [00399] Example 19: Synthesis of 2-((6-((3-chloro-5-cyano-6-((3R,4r,5S)-4-hydroxy-3,5- dimethylpiperidin -1-yl) pyridin-2-yl) amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl) oxy)-N- methyl acetamide (47) and 2-((6-((3-chloro-5-cyano-6-((3R,4s,5S)-4-hydroxy-3,5- dimethylpiperidin -1-yl) pyridin-2-yl) amino) -1-methyl-2-oxo-1, 2-dihydroquinolin-3-yl) oxy) – N methylacetamide (46) [00400] (3R,5S)-Benzyl 3,5-dimethyl-4-oxopiperidine-1-carboxylate [00401] To a solution of (3S,5R)-1-benzyl-3,5-dimethyl-piperidin-4-one (400 mg, 1.84 mmol) in toluene (4 mL) was added benzyl carbonochloridate (480.44 mg, 2.82 mmol, 400.37 µL). The mixture was stirred at 110°C for 12 hr. The residue was purified by flash silica gel chromatography (Silica Flash Column, Eluent of 0~30% Ethylacetate/Petroleum) to give the title compound as a white solid (300 mg, 1.04 mmol, 57% yield, 91% purity). 1 H NMR (400 MHz, CDCl 3 ) δ 7.41 - 7.32 (m, 5H), 5.20 (d, J = 4.4 Hz, 2H), 4.50 - 4.41 (m, 2H), 2.73 - 2.58 (m, 4H), 1.03 (d, J = 6.4 Hz, 6H). [00402] Benzyl (3S,4R,5R)-4-hydroxy-3,5-dimethyl-piperidine-1-carboxylate [00403] To a solution of benzyl (3S,5R)-3,5-dimethyl-4-oxo-piperidine-1-carboxylate (4.1 g, 15.69 mmol) in MeOH (45 mL) was added NaBH4 (712.30 mg, 18.83 mmol) at 0°C. The mixture was stirred at 20°C for 12 hr. The reaction mixture was quenched by addition 1N HCl (10 mL) at 0°C, then the mixture was concentrated under reduced pressure. The residue was dissolved in ethyl acetate (20 mL) and washed with water (10 mL x3), the combined organic phase was dried with anhydrous Na2SO4, filtered and concentrated under reduced pressure. The residue was purified by prep-HPLC (column: Agela DuraShell C18250*80mm*10µm;mobile phase: [water (NH 4 HCO 3 )- ACN]; B%: 25%-50%,20 min) to give benzyl (3S,4S,5R)-4-hydroxy-3,5-dimethyl-piperidine-1- carboxylate as a colorless oil (1.4 g, 5.26 mmol, 34% yield, 99% purity) as a colorless oil; 1 H NMR (400 MHz, MeOD-d 4 ) δ 7.36 - 7.31 (m, 5H), 5.11 (s, 2H), 4.09-4.04 (m, 2H), 2.74 (t, J = 9.6 Hz, 1H), 2.52 - 2.46 (m, 2H), 1.50 - 1.39 (m, 2H), 0.99 (d, J = 6.0 Hz, 6H); and benzyl (3S,4R,5R)-4- hydroxy-3,5-dimethyl-piperidine-1-carboxylate as a colorless oil (0.9 g, 3.35 mmol, 21% yield, 98% purity); 1 H NMR (400 MHz, MeOD-d 4 ) δ = 7.36 - 7.29 (m, 5H), 5.10 (s, 2H), 3.77 (dd, J = 4.4, 13.2 Hz, 2H), 3.54 (s, 1H), 2.77 - 2.72 (m, 2H), 1.70 - 1.60 (m, 2H), 0.94 (d, J = 6.0 Hz, 6H). [00404] (3R,4R,5S)-3,5-Dimethylpiperidin-4-ol [00405] To a solution of benzyl (3S,5R)-4-hydroxy-3,5-dimethyl-piperidine-1-carboxylate (200 mg, 759.50 µmol) in MeOH (2 mL) was added TFA (346.39 mg, 3.04 mmol, 224.93 µL) and Pd/C (50 mg, 10% purity) under Ar atmosphere. The mixture was stirred under H2 (15 Psi) at 20°C for 12 hr. The mixture was filtered and the filtrate was concentrated under reduced pressure to give the title compound as a yellow oil (150 mg, crude, TFA). 1 H NMR (400 MHz, DMSO-d 6 ) δ 4.33 (s, 2H), 3.18 - 3.16 (m, 2H), 2.76 - 2.71 (m, 1H), 2.62 - 2.53 (m, 2H), 1.68 - 1.57 (m, 2H), 0.92 (d, J = 6.8 Hz, 6H). [00406] 2-((6-((3-Chloro-5-cyano-6-((3R,4r,5S)-4-hydroxy-3,5-dimethy lpiperidin-1-yl)pyridin- 2-yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-m ethylacetamide (47) [00407] To a solution of 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-1-methyl-2-oxo -3- quinolyl]oxy]-N-methyl-acetamide (50 mg, 115.67 µmol) and (3S,4R,5R)-3,5-dimethylpiperidin- 4-ol (45.00 mg, 185.02 µmol, TFA) in DMSO (1 mL) was added DIPEA (74.75 mg, 578.36 µmol, 100.74 µL,). The mixture was stirred at 100°C for 3 hr. Water (2 mL) was added to the reaction mixture, forming a precipitate which was filtered and the filter cake was washed with water (5 mL x2), EtOAc(5 mL x2), the filter cake was dried under reduced pressure to give the title compound as a white solid (30 mg, 56.21 µmol, 49% yield, 98% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.04 (s, 1H), 7.95-7.92 (m, 2H), 7.83 (s, 1H), 7.66 - 7.64 (m, 1H), 7.46- 7.44 (m, 1H), 7.21 (s, 1H), 4.61 (d, J = 4.8 Hz, 1H), 4.53 (s, 2H), 4.14 (d, J = 11.2 Hz, 2H), 3.67 (s, 3H), 2.66 - 2.61 (m, 6H), 1.42 (s, 2H), 0.83 (s, 6H). [00408] (3R,4S,5S)-3,5-dimethylpiperidin-4-ol [00409] To a solution of benzyl (3S,4S,5R)-4-hydroxy-3,5-dimethyl-piperidine-1-carboxylate (200 mg, 759.50 µmol) in MeOH (2 mL) was added TFA (346.39 mg, 3.04 mmol, 224.93 µL) and Pd/C (50 mg, 10% purity) under Ar atmosphere. The mixture was stirred under H 2 (15 Psi) at 20°C for 12 hr. The mixture was filtered and the filtrate was concentrated under reduced pressure to give the title compound as a yellow oil (150 mg, crude, TFA). 1 H NMR (400 MHz, MeOD-d4) δ 3.05(s, 1H), 2.74 - 2.70 (m, 2H), 2.61 – 2.55 (m, 2H), 1.69 – 1.65 (m, 2H), 0.74 (d, J = 6.8 Hz, 6H). [00410] 2-((6-((3-Chloro-5-cyano-6-((3R,4s,5S)-4-hydroxy-3,5-dimethy lpiperidin-1-yl)pyridin- 2-yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-m ethylacetamide (46) [00411] To a solution of 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-1-methyl-2-oxo -3 quinolyl]oxy]-N-methyl-acetamide (25 mg, 57.84 µmol) and (3S,4S,5R)-3,5-dimethylpiperidin-4- ol (21.10 mg, 86.75 µmol, TFA) in DMSO (0.5 mL) was added DIPEA (37.37 mg, 289.18 µmol, 50.37 µL). The mixture was stirred at 100°C for 3 hr. Water (2 mL) was added to the reaction mixture, forming a precipitate which was filtered and the filter cake was washed with water (5 mL x2), EtOAc (5 mL x2), the filter cake was dried under reduced pressure to give the title compound as a white solid (9.4 mg, 17.52 µmol, 30% yield, 98% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.00 (s, 1H), 7.95 (s, 1H), 7.89 (s, 1H), 7.83 ( s, 1H), 7.67- 7.64 (m, 1H), 7.46-7.44 (m, 1H), 7.20 (s, 1H), 4.57 - 4.53 (m, 3H), 3.87 (d, J = 11.2 Hz, 2H), 3.67 (s, 3H), 3.43 (s, 1H), 2.83 (t, J = 12.3 Hz, 2H), 2.67 (m, 3H), 1.66(s, 2H), 0.78 (d, J = 6.4 Hz, 6H).
[00412] Example 20: Synthesis of 2-((6-((3-chloro-5-cyano-6-((3R,4S,5S)-4-fluoro-3, 5- dimethylpiperidin-1-yl) pyridin-2-yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl) oxy)-N- methylacetamide (45) [00413] (3R,4S,5S)-Benzyl 4-fluoro-3,5-dimethylpiperidine-1-carboxylate [00414] To a solution of benzyl (3S,4R,5R)-4-hydroxy-3,5-dimethyl-piperidine-1-carboxylate (300.00 mg, 1.14 mmol) in DCM (3 mL) was added DAST (367.27 mg, 2.28 mmol, 301.04 µL) at -65°C. Then the mixture was stirred at 20°C for 12 hr. Sat. NaHCO3 was added to the mixture until pH 8~9 was reached and then extracted with ethyl acetate (10 mL x2). The combined organic phase was dried with anhydrous Na 2 SO 4 , filtered and concentrated under reduced pressure. The residue was purified by flash silica gel chromatography (Silica Flash Column, Eluent of 0~10% Ethylacetate / Petroleum ) to give a semi-purified product. The product was further purified by p- TLC (Eluent of 25% Ethylacetate /Petroleum) to give the title compound as a yellow oil (50 mg, 150.76 µmol, 13% yield, 80% purity). 1 H NMR (400 MHz, MeOD-d4) δ 7.40 - 7.28 (m, 5H), 5.11 (s, 2H), 4.44 (d, J = 10 Hz, 1H), 4.10 - 4.06 (m, 1H), 3.90 (dd, J = 4.4, 13.2 Hz, 1H), 2.71 - 2.53 (m, 2H), 1.82 - 1.68 (m, 2H), 1.00-0.98 (m, 6H). [00415] (3R,4S,5S)-4-Fluoro-3,5-dimethylpiperidine [00416] To a solution of benzyl (3S,4S,5R)-4-fluoro-3,5-dimethyl-piperidine-1-carboxylate (40 mg, 150.76 µmol) in EtOH (1 mL) was added Pd/C (10%, 8 mg) under Ar. The mixture was stirred under H 2 (15 psi) at 20°C for 12 hours. The reaction mixture was filtered and the filtrate was added HCl/dioxane (2 mL) and stirred at 20°C for 0.5 hr. The solution was concentrated under reduced pressure to give the title compound a white oil (20 mg, 57.26 µmol, 38% yield, 48% purity, HCl). 1 H NMR (400 MHz, MeOD-d 4 ) δ 4.61-4.49 (m, 1H), 3.37 - 3.33 (m, 2H), 3.24 - 3.16 (m, 2H), 2.32 - 2.13 (m, 2H), 1.11 - 1.10 (m, 6H). [00417] 2-((6-((3-Chloro-5-cyano-6-((3R,4S,5S)-4-fluoro-3,5-dimethyl piperidin-1-yl)pyridin- 2-yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-m ethylacetamide (45) [00418] To a solution of 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-1-methyl-2-oxo -3- quinolyl]oxy]-N-methyl-acetamide (30 mg, 69.40 µmol) and (3S,4S,5R)-4-fluoro-3,5-dimethyl- piperidine (18.62 mg, 111.04 µmol, HCl) in DMF (0.5 mL) was added DIPEA (26.91 mg, 208.20 µmol, 36.27 µL). The mixture was stirred at 100°C for 3 hr. The mixture was purified by prep- HPLC (column: Phenomenex C1875*30mm*3µm; mobile phase: [water( NH 4 HCO 3 )-ACN]; B%: 35%-65%,8 min) to give the title compound as a white solid (4.5 mg, 8.38 µmol, 12% yield, 98% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.07 (s, 1H), 7.95 (s, 2H), 7.82 (d, J = 2.0 Hz, 1H), 7.64 (dd, J = 2.0, 9.2 Hz, 1H), 7.46 (d, J = 9.2 Hz, 1H), 7.22 (s, 1H), 4.56 - 4.43 (m, 3H), 3.98 (br dd, J = 3.6, 13.2 Hz, 2H), 3.67 (s, 3H), 2.78 ( t, J = 12.4 Hz, 2H), 2.66 (d, J = 4.4 Hz, 3H), 1.89 - 1.76 (m, 2H), 0.84 (d, J = 6.8 Hz, 6H). [00419] Example 21: Synthesis of 2-((6-((6-((3S,5R)-3-amino-4,4-difluoro-5-methylpiperidin- 1-yl)-3-chloro-5-cyanopyridin-2-yl)amino)-1-methyl-2-oxo-1,2 -dihydroquinolin-3-yl)oxy)-N- methylacetamide (43) and 2-((6-((6-((3R,5S)-3-amino-4,4-difluoro-5-methylpiperidin-1- yl)-3- chloro-5-cyanopyridin-2-yl)amino)-1-methyl-2-oxo-1,2-dihydro quinolin-3-yl)oxy)-N- methylacetamide (44)
[00420] 2-((6-((3-Chloro-5-cyano-6-(3-(1,3-dioxoisoindolin-2-yl)-4,4 -difluoro-5- methylpiperidin-1-yl)pyridin-2-yl)amino)-1-methyl-2-oxo-1,2- dihydroquinolin-3-yl)oxy)-N- methylacetamide [00421] To a solution of 2-(4,4-difluoro-5-methyl-3-piperidyl)isoindoline-1,3-dione (250.00 mg, 892.00 µmol) and 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-1-methyl-2-oxo -3- quinolyl]oxy]-N-methyl-acetamide (296.60 mg, 686.15 µmol) in DMSO (3 mL) was added DIPEA (177.36 mg, 1.37 mmol, 239.03 µL), and the reaction mixture was stirred at 100°C for 3 hr. The reaction mixture was treated with water (10 mL), forming a precipitate which was filtered and the filter cake was washed, collected and dried in vacuo to give the title compound as a yellow solid (450 mg, crude). [00422] 2-((6-((6-(3-Amino-4,4-difluoro-5-methylpiperidin-1-yl)-3-ch loro-5-cyanopyridin-2- yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-met hylacetamide [00423] To a solution of 2-[[6-[[3-chloro-5-cyano-6-[3-(1,3-dioxoisoindolin-2-yl)-4,4 -difluoro- 5-methyl-1-piperidyl]-2-pyridyl]amino]-1-methyl-2-oxo-3-quin olyl]oxy]-N-methyl-acetamide (400 mg, 591.66 µmol) in EtOH (20 mL) was added MeNH2 (86.13 mg, 1.11 mmol, 20 mL, 40% purity in H2O), and the reaction mixture was stirred at 70°C for 12 hr. The reaction mixture (combined with another batch at 50 mg scale) was concentrated in vacuo and purified by prep- HPLC (column: Phenomenex C1880*40mm*3µm;mobile phase: [water( NH4HCO3)-ACN];B%: 25%-45%,8min) to give the title compound as a white solid (68 mg, 98.90% purity). [00424] 2-((6-((6-((3S,5R)-3-Amino-4,4-difluoro-5-methylpiperidin-1- yl)-3-chloro-5- cyanopyridin-2-yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin- 3-yl)oxy)-N-methylacetamide (43) and 2-((6-((6-((3R,5S)-3-amino-4,4-difluoro-5-methylpiperidin-1- yl)-3-chloro-5- cyanopyridin-2-yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin- 3-yl)oxy)-N-methylacetamide (44) [00425] Racemate (68 mg) was separated by SFC (column: DAICEL CHIRALPAK AD(250mm*30mm,10µm);mobile phase: [0.1%NH3H2O ETOH];B%: 50%-50%,15min) and further purified by prep-HPLC (column: C18-1 150*30mm*5µm;mobile phase: [water( NH4HCO3)-ACN];B%: 20%-60%,20min) to give 2-[[6-[[6-[(3R,5S)-3-amino-4,4-difluoro-5- methyl-1-piperidyl]-3-chloro-5-cyano-2-pyridyl]amino]-1-meth yl-2-oxo-3-quinolyl]oxy]-N- methyl-acetamide as a white solid (8.5 mg, 15.38 µmol, 12% yield, 99% purity); 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.08 (s, 1H), 8.00 (s, 1H), 7.94 (m, 2H), 7.65 (dd, J = 2.4, 9.2 Hz, 1H), 7.48 (d, J = 9.2 Hz, 1H), 7.36 (s, 1H), 4.55 (s, 2H), 4.31 - 4.22 (d, J = 9.2 Hz, 1H), 4.16 - 4.06 (d, J = 11.6 Hz, 1H), 3.67 (s, 3H), 3.05 - 2.91 (m, 1H), 2.87 - 2.74 (m, 2H), 2.66 (d, J = 4.4 Hz, 3H), 2.16 - 2.01 (m, 1H), 1.94 - 1.61 (m, 2H), 0.85 (d, J = 6.4 Hz, 3H); and 2-[[6-[[6-[(3S,5R)-3-amino-4,4- difluoro-5-methyl-1-piperidyl]-3-chloro-5-cyano-2-pyridyl]am ino]-1-methyl-2-oxo-3- quinolyl]oxy]-N-methyl-acetamide as a white solid (13 mg, 23.25 µmol, 19% yield, 98% purity); 1 H NMR (400 MHz, DMSO-d6) δ 9.08 (s, 1H), 8.00 (s, 1H), 7.94 (m, 2H), 7.65 (dd, J = 2.4, 9.2 Hz, 1H), 7.48 (d, J = 9.2 Hz, 1H), 7.36 (s, 1H), 4.55 (s, 2H), 4.26 (d, J = 12.8 Hz, 1H), 4.11 (dd, J = 2.4, 14.0 Hz, 1H), 3.67 (s, 3H), 3.05 - 2.91 (m, 1H), 2.86 - 2.74 (m, 2H), 2.66 (d, J = 4.4 Hz, 3H), 2.16 - 2.00 (m, 1H), 1.76 (s, 2H), 0.85 (d, J = 6.8 Hz, 3H). [00426] The absolute configurations of compounds 43 & 44 were randomly assigned based on the amino group and methyl group being in cis-conformation. [00427] Example 22: Synthesis of 2-((1-(azetidin-3-ylmethyl)-6-((3-chloro-5-cyano-6- ((3R,5S)-4,4-difluoro-3,5-dimethylpiperidin-1-yl)pyridin-2-y l)amino)-2-oxo-1,2- dihydroquinolin-3-yl)oxy)-N-methylacetamide (65) [00428] tert-Butyl 3-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethy lpiperidin-1- yl)pyridin-2-yl)amino)-3-(2-methoxy-2-oxoethoxy)-2-oxoquinol in-1(2H)-yl)methyl)azetidine-1- carboxylate [00429] A mixture of methyl 2-[[6-[[3-chloro-5-cyano-6-[(3S,5R)-4,4-difluoro-3,5-dimethy l-1- piperidyl]-2-pyridyl]amino]-2-oxo-1H-quinolin-3-yl]oxy]aceta te (100 mg, 187.99 µmol), tert- butyl 3-(iodomethyl)azetidine-1-carboxylate (55.86 mg, 187.99 µmol, 5.41 µL), K 2 CO 3 (51.96 mg, 375.98 µmol), in DMSO (1.5 mL) was stirred at 80°C for 12 hr. The mixture (combined with another batch at same scale) was cooled to 20°C and water (2 mL) was added, forming a precipitate which was filtered and washed with H2O (50 mL) and ethyl acetate (20 mL), then the solid was dried under reduced pressure to give the title compound as a brown solid (200 mg, crude). LCMS: [M+H] + = 701.3. [00430] tert-Butyl 3-((6-((3-chloro-5-cyano-6-((3R,5S)-4,4-difluoro-3,5-dimethy lpiperidin-1- yl)pyridin-2-yl)amino)-3-(2-(methylamino)-2-oxoethoxy)-2-oxo quinolin-1(2H)- yl)methyl)azetidine-1-carboxylate [00431] A mixture of tert-butyl 3-[[6-[[3-chloro-5-cyano-6-[(3S,5R)-4,4-difluoro-3,5-dimethy l- 1-piperidyl]-2-pyridyl]amino]-3-(2-methoxy-2-oxo-ethoxy)-2-o xo-1-quinolyl]methyl]azetidine- 1-carboxylate (200 mg, 285.24 µmol), MeNH 2 /H 2 O (10 mL, 40% purity) in EtOH (10 mL) was stirred at 70°C for 12 hr. The mixture was concentrated to give the title compound as a yellow solid (250 mg, crude), which was used without further purification. LCMS: [M+H] + = 700.2. [00432] 2-((1-(Azetidin-3-ylmethyl)-6-((3-chloro-5-cyano-6-((3R,5S)- 4,4-difluoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-2-oxo-1,2-dihydro quinolin-3-yl)oxy)-N- methylacetamide (65) [00433] A mixture of tert-butyl 3-[[6-[[3-chloro-5-cyano-6-[(3S,5R)-4,4-difluoro-3,5-dimethy l- 1-piperidyl]-2-pyridyl]amino]-3-[2-(methylamino)-2-oxo-ethox y]-2-oxo-1- quinolyl]methyl]azetidine-1-carboxylate (250 mg, 357.05 µmol) in DCM (2 mL) and TFA (1 mL) was stirred at 20°C for 1 hr. The mixture was concentrated in vacuo and purified by p-HPLC (column: Waters Xbridge BEH C18 100*25mm*5µm;mobile phase: [water(NH 4 HCO 3 )- ACN];B%: 30%-60%,10min) to give the title compound as a white solid (25 mg, 37.34 µmol, 10% yield, 90% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.01 - 9.21 (m, 1H), 8.00 (s, 1H), 7.95 (br d, J = 4.63 Hz, 1H), 7.75 (d, J = 2.13 Hz, 1H), 7.61 (dd, J = 8.94, 1.81 Hz, 1H), 7.51 (br d, J = 9.01 Hz, 1H), 7.22 (s, 1H), 4.49 - 4.61 (m, 4H), 4.12 (br d, J = 12.51 Hz, 2H), 3.41 (br d, J = 5.00 Hz, 4H), 2.99 - 3.10 (m, 1H), 2.78 (br t, J = 13.01 Hz, 2H), 2.67 (d, J = 4.50 Hz, 4H), 1.96 - 2.17 (m, 2H), 0.83 (d, J = 6.63 Hz, 6 H). [00434] Example 23: Synthesis of 2-((3R,5S)-3-amino-5-methylpiperidin-1-yl)-5-chloro-6- (((S)-2-cyclopropyl-3,3-difluoro-7-methyl-6-oxo-1,2,3,4,6,7- hexahydro-[1,4]oxazepino[2,3- c]quinolin-10-yl)amino)nicotinonitrile (24) and 2-((3S,5R)-3-amino-5-methylpiperidin-1-yl)-5- chloro-6-(((S)-2-cyclopropyl-3,3-difluoro-7-methyl-6-oxo-1,2 ,3,4,6,7-hexahydro- [1,4]oxazepino[2,3-c]quinolin-10-yl)amino)nicotinonitrile (25) [00435] Ethyl 4-hydroxy-6-nitro-2-oxo-1,2-dihydroquinoline-3-carboxylate [00436] To a solution of 6-nitro-1H-benzo[d][1,3]oxazine-2,4-dione (20 g, 96.09 mmol) and diethyl malonate (23.09 g, 144.14 mmol, 21.78 mL) in DMF (500 mL) was added NaH (7.69 g, 192.19 mmol, 60% purity) at 0°C. The reaction mixture was allowed to warm to 20°C and stirred for 12 hr. The reaction mixture was cooled to 0°C and water (1000 mL) was added. The aqueous mixture was neutralized to pH =7 with 1N HCI aq and the resulting mixture was stirred at 20°C for 30 min. The resulting yellow precipitate was filtered and washed with water (1 L). The yellow precipitate was dried under reduced pressure to give the title compound as a yellow solid (46 g, 160.49 mmol, 84% yield, 97% purity). 1 H NMR (400 MHz, DMSO-d6) δ 12.08 (s, 1H), 8.73 (d, J = 1.9 Hz, 1H), 8.47 - 8.36 (m, 1H), 7.95 (s, 1H), 7.41 (d, J = 9.0 Hz, 1H), 4.32 (q, J = 7.1 Hz, 2H), 2.89 (s, 2H), 2.73 (s, 3H), 1.30 (t, J = 7.0 Hz, 3H). [00437] Ethyl 2,4-dichloro-6-nitroquinoline-3-carboxylate [00438] A mixture of ethyl 4-hydroxy-6-nitro-2-oxo-1,2-dihydroquinoline-3-carboxylate (46 g, 165.34 mmol) in POCl 3 (450 mL), then the mixture was stirred at 80°C for 4 hr under N 2 atmosphere. The reaction mixture was concentrated under reduced pressure to give a residue which was triturated with MTBE (100 mL) at 25°C for 30 min to give the title compound as a yellow solid (37 g, 114.07 mmol, 69% yield, 97% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 8.99 (d, J = 2.5 Hz, 1H), 8.67 (dd, J = 2.5, 9.2 Hz, 1H), 8.31 (d, J = 9.2 Hz, 1H), 4.53 (q, J = 7.0 Hz, 2H), 1.39 (t, J = 7.1 Hz, 3H). [00439] Ethyl 4-chloro-6-nitro-2-oxo-1,2-dihydroquinoline-3-carboxylate [00440] A mixture of ethyl 2,4-dichloro-6-nitroquinoline-3-carboxylate (35 g, 111.07 mmol), NaOAc (10.02 g, 122.18 mmol) in AcOH (350 mL), then the mixture was stirred at 120°C for 12 hr under N 2 atmosphere. Water (500 mL) was added to the reaction mixture (combined with other batch at 2 g scale), forming a precipitate which was filtered and washed with H 2 O (1 L), then the solid was dried under reduced pressure to give the title compound as a yellow solid (25 g, 92% purity). 1 H NMR (400 MHz, DMSO-d6) δ 12.99 (s, 1H), 8.66 (d, J = 2.5 Hz, 1H), 8.49 (dd, J = 2.5, 9.0 Hz, 1H), 7.55 (d, J = 9.0 Hz, 1H), 4.38 (q, J = 7.0 Hz, 2H), 1.32 (t, J = 7.1 Hz, 3H). [00441] Ethyl 4-chloro-1-methyl-6-nitro-2-oxo-1,2-dihydroquinoline-3-carbo xylate [00442] To a mixture of ethyl 4-chloro-6-nitro-2-oxo-1,2-dihydroquinoline-3-carboxylate (15 g, 50.56 mmol) in DMF (150 mL) was added NaH (2.83 g, 70.79 mmol, 60% purity) at 0°C and the mixture was stirred at 0°C for 0.5 hr, then iodomethane (35.88 g, 252.81 mmol, 15.74 mL) was added to the mixture and the mixture was stirred at 20°C for 6 hr. Water (50 mL) was added to the mixture, forming a precipitate which was filtered and washed with H 2 O (100 mL), then the solid was dried under reduced pressure. The residue was purified by column chromatography (SiO 2 , Petroleum ether/Ethyl acetate=30/1 to 2/1) to give a semi-purified product which was further purified by reversed-phase MPLC (neutral condition: Column: 330g Agela C18; Mobile phase: [water-ACN]; Gradient B%: 25-50% 20min; 50-50% 20min) to give the title compound as a yellow solid (9.3 g, 29.68 mmol, 59% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 8.71 (d, J = 2.6 Hz, 1H), 8.54 (dd, J = 2.6, 9.3 Hz, 1H), 7.87 (d, J = 9.4 Hz, 1H), 4.39 (q, J = 7.1 Hz, 2H), 3.69 (s, 3H), 1.32 (t, J = 7.1 Hz, 3H). [00443] (S)-Ethyl 4-((1-cyclopropyl-2,2-difluoro-3-hydroxypropyl)amino)-1-meth yl-6-nitro-2- oxo-1,2-dihydroquinoline-3-carboxylate [00444] To a solution of ethyl 4-chloro-1-methyl-6-nitro-2-oxo-1,2-dihydroquinoline-3- carboxylate (500 mg, 1.61 mmol) and (S)-3-amino-3-cyclopropyl-2,2-difluoropropan-1-ol hydrochloride (413.65 mg, 2.20 mmol) in MeCN (5 mL) was added DIEA (519.40 mg, 4.02 mmol, 700.00 µL) under N2. The mixture was stirred at 160°C for 32 hr under microwave. The mixture was concentrated in vacuo to give the title compound as a brown solid (680 mg, 799.28 µmol, 50% yield, 50% purity). LCMS: [M+H] + = 426.1. [00445] (S)-4-((1-Cyclopropyl-2,2-difluoro-3-hydroxypropyl)amino)-1- methyl-6-nitroquinolin- 2(1H)-one [00446] To a solution of (S)-ethyl 4-((1-cyclopropyl-2,2-difluoro-3-hydroxypropyl)amino)-1- methyl-6-nitro-2-oxo-1,2-dihydroquinoline-3-carboxylate (680 mg, 1.60 mmol) in MeCN (5 mL) was added NaOH (2 M, 25.00 mL). The mixture was stirred at 85°C for 2 hr. Water (20 mL) was then added, followed by the addition of 3N HCl until pH=6. A precipitate formed which was filtered and filter cake was dried with reduce pressure to give the title compound as a yellow solid (400 mg, 520.77 µmol, 33% yield, 46% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.30 (d, J = 2.50 Hz, 1H), 8.39 (dd, J = 9.36, 2.44 Hz, 1H), 7.62 (d, J = 9.42 Hz, 1H), 7.47 (d, J = 8.70 Hz, 1H), 5.72 (s, 1H), 5.59 (t, J = 6.14 Hz, 1H), 3.72 - 3.89 (m, 2H), 3.55 (s, 3H), 3.46 - 3.53 (m, 1H), 1.29 - 1.38 (m, 1H), 0.64 - 0.72 (m, 1H), 0.60 (dq, J = 9.40, 4.77 Hz, 1H), 0.46 - 0.54 (m, 1H), 0.24 (dq, J = 9.55, 4.84 Hz, 1H). [00447] (S)-3-Bromo-4-((1-cyclopropyl-2,2-difluoro-3-hydroxypropyl)a mino)-1-methyl-6- nitroquinolin-2(1H)-one [00448] To a solution of (S)-4-((1-cyclopropyl-2,2-difluoro-3-hydroxypropyl)amino)-1- methyl- 6-nitroquinolin-2(1H)-one (400 mg, 1.13 mmol) and NBS (201.49 mg, 1.13 mmol) in DCM (8 mL) was added TFA (645.42 mg, 5.66 mmol, 419.10 µL) dropwise at 0°C under N 2 . The mixture was stirred at 0°C for 0.5 hr. Sat. NaHCO 3 (50 mL) was added to the mixture and was extracted with DCM (20 mL x3). The combined organic phase was washed with brine (20 mL), dried with anhydrous Na2SO4, filtered and concentrated in vacuo. The residue was purified by flash silica gel chromatography (ISCO®; 20g SepaFlash® Silica Flash Column, Eluent of 0~30% Ethyl acetate/Petroleum ether gradient @ 100 mL/min) to give the title compound as a white solid (400 mg, 832.92 µmol, 74% yield, 90% purity). 1 H NMR (400 MHz, DMSO-d6) δ 8.95 (d, J = 2.45 Hz, 1H), 8.43 (dd, J = 9.35, 2.51 Hz, 1H), 7.75 (d, J = 9.41 Hz, 1H), 5.85 (d, J = 11.13 Hz, 1H), 5.62 (t, J = 5.14 Hz, 1H), 3.96 - 4.06 (m, 1H), 3.77 - 3.90 (m, 2H), 3.71 (s, 3H), 1.20 - 1.33 (m, 1H), 0.52 - 0.70 (m, 3H), 0.41 - 0.51 (m, 1H). [00449] (S)-2-Cyclopropyl-3,3-difluoro-7-methyl-10-nitro-1,2,3,4-tet rahydro- [1,4]oxazepino[2,3-c]quinolin-6(7H)-one [00450] To a solution of (S)-3-bromo-4-((1-cyclopropyl-2,2-difluoro-3-hydroxypropyl)a mino)- 1-methyl-6-nitroquinolin-2(1H)-one (400 mg, 925.46 µmol) in THF (10 mL) was added t-BuLi (1.3 M, 1.14 mL) (1.3 M in pentane) at 20°C under N 2 . The mixture was stirred at 60°C for 0.25 hr. Water (40 mL) was added and the aqueous mixture was extracted with CH2Cl2 (20 mL x2). The organic extracts were combined, washed with brine (50 mL), dried with Na2SO4, filtered and concentrated in vacuo. The residue was purified by flash silica gel chromatography (ISCO®; 20g SepaFlash® Silica Flash Column, Eluent of 0~30% Ethyl acetate/Petroleum ether gradient @ 100 mL/min) to give the title compound as a yellow solid (250 mg, 711.63 µmol, 77% yield). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.11 (d, J = 2.41 Hz, 1H), 8.34 (dd, J = 9.32, 2.52 Hz, 1H), 7.65 (d, J = 9.43 Hz, 1H), 7.01 (d, J = 3.73 Hz, 1H), 4.34 - 4.56 (m, 2H), 3.61 (s, 3H), 3.22 - 3.30 (m, 1H), 1.29 - 1.40 (m, 1H), 0.68 - 0.77 (m, 1H), 0.49 - 0.59 (m, 2H), 0.30 - 0.38 (m, 1H). [00451] (S)-10-Amino-2-cyclopropyl-3,3-difluoro-7-methyl-1,2,3,4-tet rahydro- [1,4]oxazepino[2,3-c]quinolin-6(7H)-one [00452] To a mixture of Pd/C (0.05 g, 768.56 µmol, 10% purity) in THF (10 mL) was added (S)-2-cyclopropyl-3,3-difluoro-7-methyl-10-nitro-1,2,3,4-tet rahydro-[1,4]oxazepino[2,3- c]quinolin-6(7H)-one (250 mg, 711.63 µmol) under Ar. The suspension was degassed under vacuum and purged with H2 several times. The mixture was stirred under H2 (15 psi) at 60°C for 2 hours. The mixture was filtered and the filtrate was concentrated in vacuo to give the title compound as a yellow solid (150 mg, 261.42 µmol, 37% yield, 56% purity). LCMS: [M+H] + = 322.1. [00453] (S)-2,5-Dichloro-6-((2-cyclopropyl-3,3-difluoro-7-methyl-6-o xo-1,2,3,4,6,7- hexahydro-[1,4]oxazepino[2,3-c]quinolin-10-yl)amino)nicotino nitrile [00454] To a solution of (S)-10-amino-2-cyclopropyl-3,3-difluoro-7-methyl-1,2,3,4-tet rahydro- [1,4]oxazepino[2,3-c]quinolin-6(7H)-one (150 mg, 466.82 µmol) and 2,5,6-trichloropyridine-3- carbonitrile (96.84 mg, 466.82 µmol) in DMF (5 mL) was added DIEA (120.67 mg, 933.65 µmol, 162.62 µL). The mixture was stirred at 100°C for 12 hr. The mixture was cooled to 20°C and water (10 mL) was added, forming a precipitate which was filtered and the filter cake was concentrated in vacuo to give the title compound as a yellow solid (150 mg, 152.34 µmol, 33% yield, 50% purity). LCMS: [M+H] + = 492.0. [00455] tert-Butyl (1-(5-chloro-3-cyano-6-(((S)-2-cyclopropyl-3,3-difluoro-7-me thyl-6-oxo- 1,2,3,4,6,7-hexahydro-[1,4]oxazepino[2,3-c]quinolin-10-yl)am ino)pyridin-2-yl)-5- methylpiperidin-3-yl)carbamate [00456] To a solution of (S)-2,5-dichloro-6-((2-cyclopropyl-3,3-difluoro-7-methyl-6-o xo- 1,2,3,4,6,7-hexahydro-[1,4]oxazepino[2,3-c]quinolin-10-yl)am ino)nicotinonitrile (150 mg, 304.69 µmol) and tert-butyl N-(5-methyl-3-piperidyl)carbamate (78.36 mg, 365.63 µmol) in DMSO (2 mL) was added DIEA (78.76 mg, 609.38 µmol, 106.14 µL). The mixture was stirred at 100°C for 1 hr. The mixture was cooled to 20°C and water (5 mL) was added, forming a precipitate which was filtered and the filter cake was concentrated in vacuo to give the title compound as a yellow solid (150 mg, 111.92 µmol, 37% yield, 50% purity). LCMS: [M+H] + = 670.2. [00457] 2-(3-Amino-5-methylpiperidin-1-yl)-5-chloro-6-(((S)-2-cyclop ropyl-3,3-difluoro-7- methyl-6-oxo-1,2,3,4,6,7-hexahydro-[1,4]oxazepino[2,3-c]quin olin-10-yl)amino)nicotinonitrile [00458] To a solution of tert-butyl (1-(5-chloro-3-cyano-6-(((S)-2-cyclopropyl-3,3-difluoro-7- methyl-6-oxo-1,2,3,4,6,7-hexahydro-[1,4]oxazepino[2,3-c]quin olin-10-yl)amino)pyridin-2-yl)-5- methylpiperidin-3-yl)carbamate (150 mg, 223.83 µmol) in HCl/EtOAc (4 M, 7.50 mL). The mixture was stirred at 20°C for 1 hr. The mixture was concentrated in vacuo and used without further work up. The residue was purified by prep-HPLC (column: Waters Xbridge BEH C18 100*30mm*10µm;mobile phase: [water( NH4HCO3)-ACN];B%: 30%-60%,10min) to give the title compound as a yellow solid (40 mg, 70.07 µmol, 31% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.02 (s, 1H), 8.09 - 8.13 (m, 1H), 7.90 (s, 1H), 7.64 (dd, J = 8.99, 1.65 Hz, 1H), 7.44 (dd, J = 9.05, 1.10 Hz, 1H), 6.26 - 6.33 (m, 1H), 4.26 - 4.51 (m, 3H), 4.14 (d, J = 11.74 Hz, 1H), 3.98 - 4.06 (m, 1H), 3.56 (s, 3H), 2.37 - 2.45 (m, 2H), 2.23 - 2.35 (m, 2H), 1.76 - 1.85 (m, 2H), 1.52 (s, 1H), 1.28 - 1.37 (m, 1H), 0.72 - 0.82 (m, 2H), 0.68 (d, J = 7.09 Hz, 3H), 0.52 (d, J = 5.14 Hz, 2H), 0.28 - 0.36 (m, 1H). [00459] 2-((3R,5S)-3-Amino-5-methylpiperidin-1-yl)-5-chloro-6-(((S)- 2-cyclopropyl-3,3- difluoro-7-methyl-6-oxo-1,2,3,4,6,7-hexahydro-[1,4]oxazepino [2,3-c]quinolin-10- yl)amino)nicotinonitrile (24) [00460] 2-(3-Amino-5-methylpiperidin-1-yl)-5-chloro-6-(((S)-2-cyclop ropyl-3,3-difluoro-7- methyl-6-oxo-1,2,3,4,6,7-hexahydro-[1,4]oxazepino[2,3-c]quin olin-10-yl)amino)nicotinonitrile (70.00 mg, 122.80 µmol) was separated by SFC (column: DAICEL CHIRALPAK IC(250mm*30mm,10µm);mobile phase: [ACN/IPA(0.1%NH 3 H 2 O)];B%: 65%-65%,30min) to give the title compound as a yellow solid (8 mg, 13.31 µmol, 11% yield, 95% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.16 (s, 1H), 8.09 (d, J = 1.67 Hz, 1H), 8.02 (s, 1H), 7.92 (s, 2H), 7.68 (dd, J = 8.94, 1.79 Hz, 1H), 7.45 (d, J = 9.06 Hz, 1H), 6.29 (s, 1H), 4.24 - 4.48 (m, 3H), 3.94 (d, J = 12.64 Hz, 1H), 3.57 (s, 3H), 3.18 - 3.26 (m, 1H), 3.06 (t, J = 11.32 Hz, 1H), 2.82 (t, J = 11.98 Hz, 1H), 2.28 - 2.36 (m, 1H), 1.95 (d, J = 12.16 Hz, 1H), 1.59 - 1.71 (m, 1H), 1.30 - 1.37 (m, 1H), 1.23 (s, 1H), 1.05 (q, J = 11.96 Hz, 1H), 0.68 (d, J = 6.44 Hz, 3H), 0.53 (t, J = 5.66 Hz, 2H), 0.28 - 0.35 (m, 1H). [00461] 2-((3S,5R)-3-Amino-5-methylpiperidin-1-yl)-5-chloro-6-(((S)- 2-cyclopropyl-3,3- difluoro-7-methyl-6-oxo-1,2,3,4,6,7-hexahydro-[1,4]oxazepino [2,3-c]quinolin-10- yl)amino)nicotinonitrile (25) [00462] 2-(3-Amino-5-methylpiperidin-1-yl)-5-chloro-6-(((S)-2-cyclop ropyl-3,3-difluoro-7- methyl-6-oxo-1,2,3,4,6,7-hexahydro-[1,4]oxazepino[2,3-c]quin olin-10-yl)amino)nicotinonitrile (70.00 mg, 122.80 µmol) was separated by SFC (column: DAICEL CHIRALPAK IC(250mm*30mm,10µm);mobile phase: [ACN/IPA(0.1%NH 3 H 2 O)];B%: 65%-65%,30min) to give the title compound as a yellow solid (8.2 mg, 14.18 µmol, 12% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.22 (s, 1H), 8.14 (s, 1H), 8.09 (s, 1H), 7.94 (d, J = 2.38 Hz, 2H), 7.73 - 7.78 (m, 1H), 7.51 (d, J = 9.06 Hz, 1H), 6.33 (s, 1H), 4.29 - 4.53 (m, 3H), 3.99 (d, J = 12.52 Hz, 1H), 3.63 (s, 3H), 3.24 - 3.32 (m, 1H), 3.07 - 3.16 (m, 1H), 2.86 (t, J = 11.86 Hz, 1H), 2.39 (t, J = 12.16 Hz, 1H), 2.02 (d, J = 11.21 Hz, 1H), 1.70 (dt, J = 5.27, 2.67 Hz, 1H), 1.35 - 1.42 (m, 1H), 1.29 (s, 1H), 1.12 (q, J = 12.20 Hz, 1H), 0.76 (d, J = 6.44 Hz, 3H), 0.59 (d, J = 5.01 Hz, 2H), 0.38 (d, J = 4.41 Hz, 1H). [00463] The absolute configurations of compounds 24 & 25 were randomly assigned based on the amino group and methyl group being in cis-conformation. [00464] Example 24: Synthesis of 2-((6-((6-((3R,5S)-3-amino-5-methylpiperidin-1-yl)-3- chloro-5-cyanopyridin-2-yl)amino)-1-methyl-2-oxo-1,2-dihydro quinolin-3-yl)oxy)-N- methylacetamide (39) and 2-((6-((6-((3S,5R)-3-amino-5-methylpiperidin-1-yl)-3-chloro- 5- cyanopyridin-2-yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin- 3-yl)oxy)-N-methylacetamide (40) [00465] tert-Butyl (1-(5-chloro-3-cyano-6-((1-methyl-3-(2-(methylamino)-2-oxoet hoxy)-2-oxo- 1,2-dihydroquinolin-6-yl)amino)pyridin-2-yl)-5-methylpiperid in-3-yl)carbamate [00466] A flask with mixture of 2-((6-((3,6-dichloro-5-cyanopyridin-2-yl)amino)-1-methyl-2- oxo-1,2-dihydroquinolin-3-yl)oxy)-N-methylacetamide (300 mg, 694.03 µmol), tert-butyl N-(5- methyl-3-piperidyl)carbamate (178.48 mg, 832.83 µmol) and DIEA (179.40 mg, 1.39 mmol, 241.77 µL) in DMSO (6 mL) was degassed and purged with N 2 for 3 times, and then the mixture was stirred at 100°C for 12 hr under N 2 atmosphere. The mixture was cooled to 20°C and water (10 mL) was added, forming a precipitate which was filtered and the filter cake was washed by EtOAc (20 mL) and concentrated in vacuo to give the title compound as a grey solid (300 mg, 418.95 µmol, 60% yield, 85% purity) as gray solid. LCMS: [M+H] + = 610.2. [00467] 2-((6-((6-(3-Amino-5-methylpiperidin-1-yl)-3-chloro-5-cyanop yridin-2-yl)amino)-1- methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-methylacetamide [00468] A mixture of tert-butyl (1-(5-chloro-3-cyano-6-((1-methyl-3-(2-(methylamino)-2- oxoethoxy)-2-oxo-1,2-dihydroquinolin-6-yl)amino)pyridin-2-yl )-5-methylpiperidin-3- yl)carbamate (300 mg, 491.72 µmol) and HCl/EtOAc (4 N HCl in EtOAc, 20 mL) was stirred at 20°C for 1 hr. The mixture was concentrated in vacuo without further work up and the residue was purified by prep-HPLC (column: Phenomenex Luna C18 80*40mm*3µm; mobile phase: [water(HCl)-ACN]; B%: 20%-50%, 7min) to give the title compound as a yellow solid (150 mg, HCl, 99% purity). 1 H NMR (400 MHz, DMSO-d6, 26°C) δ 9.12 (s, 1H), 8.26 (s, 2H), 8.00 - 8.08 (m, 2H), 7.86 (d, J = 2.20 Hz, 1H), 7.71 (dd, J = 9.05, 2.20 Hz, 1H), 7.54 (d, J = 9.17 Hz, 1H), 7.31 (s, 1H), 4.56 - 4.62 (m, 2H), 4.32 (d, J = 9.17 Hz, 1H), 4.01 (d, J = 11.49 Hz, 1H), 3.69 (s, 3H), 3.10 - 3.21 (m, 1H), 2.84 (t, J = 11.74 Hz, 1H), 2.68 (d, J = 4.52 Hz, 3H), 2.39 - 2.46 (m, 1H), 2.03 - 2.11 (m, 1H), 1.72 - 1.86 (m, 1H), 1.16 (q, J = 11.86 Hz, 1H), 0.84 (d, J = 6.48 Hz, 3H). [00469] 2-((6-((6-((3R,5S)-3-Amino-5-methylpiperidin-1-yl)-3-chloro- 5-cyanopyridin-2- yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-met hylacetamide (39) [00470] 2-((6-((6-(3-Amino-5-methylpiperidin-1-yl)-3-chloro-5-cyanop yridin-2-yl)amino)-1- methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-methylacetamide (150 mg, 274.50 µmol, HCl) was separated by SFC (column: DAICEL CHIRALPAK AD (250mm*30mm, 10µm); mobile phase: 0.1%NH 3 H 2 O EtOH; B%: 47%-47%, 7 min) to give the title compound as a white solid (10 mg, 18.50 µmol, 7% yield, 94% purity). 1 H NMR (400 MHz, DMSO-d 6 , 24°C) δ 8.98 (s, 1H), 7.98 (s, 2H), 7.92 (s, 1H), 7.67 (dd, J = 8.80, 1.83 Hz, 1H), 7.47 (d, J = 8.93 Hz, 1H), 7.29 (s, 1H), 4.54 (s, 2H), 4.24 (d, J = 11.62 Hz, 1H), 4.13 (d, J = 12.72 Hz, 1H), 3.67 (s, 3H), 2.66 (d, J = 4.52 Hz, 4H), 2.32 - 2.45 (m, 1H), 1.88 (d, J = 12.23 Hz, 1H), 1.68 - 1.75 (m, 1H), 1.64 (d, J = 9.29 Hz, 1H), 1.18 - 1.30 (m, 1H), 0.79 (d, J = 6.48 Hz, 3H). [00471] 2-((6-((6-((3S,5R)-3-Amino-5-methylpiperidin-1-yl)-3-chloro- 5-cyanopyridin-2- yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-met hylacetamide (40) [00472] 2-((6-((6-(3-amino-5-methylpiperidin-1-yl)-3-chloro-5-cyanop yridin-2-yl)amino)-1- methyl-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-methylacetamide (150 mg, 274.50 µmol, HCl) was separated by SFC (column: DAICEL CHIRALPAK AD (250mm*30mm,10µm); mobile phase: 0.1%NH 3 H 2 O EtOH; B%: 47%-47%, 7 min) to give the title compound as a white solid (10 mg, 18.50 µmol, 7% yield, 94% purity). 1 H NMR (400 MHz, DMSO-d 6 , 24°C) δ 9.13 (s, 1H), 8.25 (s, 2H), 8.01 - 8.11 (m, 2H), 7.86 (s, 1H), 7.70 (d, J = 8.93 Hz, 1H), 7.54 (d, J = 9.17 Hz, 1H), 7.31 (s, 1H), 4.59 (s, 2H), 4.31 (d, J = 10.88 Hz, 1H), 4.00 (d, J = 11.25 Hz, 1H), 3.68 (s, 3H), 3.15 (t, J = 10.58 Hz, 1H), 2.83 (t, J = 11.80 Hz, 1H), 2.67 (d, J = 4.40 Hz, 3H), 2.37 - 2.45 (m, 1H), 2.02 - 2.10 (m, 1H), 1.78 (d, J = 3.55 Hz, 1H), 1.09 - 1.29 (m, 2H), 0.83 (d, J = 6.48 Hz, 3H). [00473] The absolute configurations of compounds 39 & 40 were randomly assigned based on the amino group and methyl group being in cis-conformation. [00474] Example 25: Synthesis of 2-((3R,5S)-3-amino-5-methylpiperidin-1-yl)-5-chloro-6-((3- (3-hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benz o[d]imidazol-5- yl)amino)nicotinonitril (35) and 2-((3S,5R)-3-amino-5-methylpiperidin-1-yl)-5-chloro-6-((3-(3 - hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d ]imidazol-5- yl)amino)nicotinonitrile (36) [00475] tert-Butyl (1-(5-chloro-3-cyano-6-((3-(3-hydroxy-3-methylbutyl)-1-methy l-2-oxo-2,3- dihydro-1H-benzo[d]imidazol-5-yl)amino)pyridin-2-yl)-5-methy lpiperidin-3-yl)carbamate [00476] A flask with mixture of 2,5-dichloro-6-((3-(3-hydroxy-3-methylbutyl)-1-methyl-2-oxo- 2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile (100 mg, 237.93 µmol), tert-butyl (5-methylpiperidin-3-yl)carbamate (61.19 mg, 285.52 µmol) and DIEA (61.50 mg, 475.86 µmol, 82.89 µL) in DMSO (1 mL) was degassed and purged with N 2 for 3 times, and then the mixture was stirred at 100°C for 1 hr under N 2 atmosphere. Water (5 mL) was added, forming a precipitate which was filtered and the filter cake was dried under reduced pressure to give the title compound as a yellow solid (150 mg, 213.51 µmol, 90% yield, 85% purity). LCMS: [M-Boc+H] + = 498.2. [00477] 2-(3-Amino-5-methylpiperidin-1-yl)-5-chloro-6-((3-(3-hydroxy -3-methylbutyl)-1- methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nico tinonitrile [00478] A mixture of tert-butyl (1-(5-chloro-3-cyano-6-((3-(3-hydroxy-3-methylbutyl)-1- methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)pyri din-2-yl)-5-methylpiperidin-3- yl)carbamate (130 mg, 217.34 µmol) and HCl/EtOAc (4 M, 13 mL) was stirred at 20°C for 1 hr under N2 atmosphere. The mixture was concentrated in vacuo to give the title compound as a yellow solid (25 mg, 46.43 µmol, 21% yield, 99% purity, HCl). 1 H NMR (400 MHz, DMSO-d6) δ 0.78 (d, J = 6.60 Hz, 3H), 1.17 (s, 7H), 1.67 - 1.75 (m, 3H), 2.02 (br d, J = 11.98 Hz, 1H), 2.34 - 2.42 (m, 1H), 2.83 (t, J = 11.92 Hz, 1H), 3.07 - 3.17 (m, 1H), 3.32 (s, 2H), 3.85 - 3.90 (m, 2H), 3.93 - 3.99 (m, 1H), 4.26 - 4.32 (m, 1H), 7.12 (d, J = 8.31 Hz, 1H), 7.25 - 7.33 (m, 2H), 7.98 (s, 1H), 8.09 (br s, 3H), 8.99 (s, 1H). [00479] 2-((3R,5S)-3-Amino-5-methylpiperidin-1-yl)-5-chloro-6-((3-(3 -hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile (35) and 2-((3S,5R)-3-amino-5-methylpiperidin-1-yl)-5-chloro-6-((3-(3 -hydroxy-3-methylbutyl)-1- methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nico tinonitrile (36) [00480] Racemic 2-(3-amino-5-methylpiperidin-1-yl)-5-chloro-6-((3-(3-hydroxy -3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile (50 mg, HCl) was separated by SFC (column: DAICEL CHIRALPAK AD(250mm*30mm,10µm); mobile phase: [0.1%NH 3 H 2 O IPA]; B%: 30%-30%, 10min) to give 2-((3S,5R)-3-amino-5- methylpiperidin-1-yl)-5-chloro-6-((3-(3-hydroxy-3-methylbuty l)-1-methyl-2-oxo-2,3-dihydro- 1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile as a white solid (11.6 mg, 22.90 µmol, 24% yield, 98% purity); 1 H NMR (400 MHz, DMSO-d 6 ) δ 0.78 (d, J = 6.60 Hz, 3H), 1.08 - 1.16 (m, 2H), 1.17 (s, 6H), 1.67 - 1.74 (m, 3H), 2.04 (br d, J = 11.49 Hz, 1H), 2.40 (br d, J = 11.86 Hz, 1H), 2.85 (br t, J = 11.86 Hz, 1H), 3.10 (br t, J = 10.82 Hz, 1H), 3.32 (br s, 2H), 3.84 - 3.91 (m, 2H), 3.96 (br d, J = 11.49 Hz, 1H), 4.28 (br d, J = 9.66 Hz, 1H), 7.14 (d, J = 8.44 Hz, 1H), 7.28 - 7.31 (m, 1H), 7.32 (s, 1H), 7.98 (s, 1H), 8.22 (br s, 3H), 8.99 (s, 1H); and 2-((3R,5S)-3-amino-5- methylpiperidin-1-yl)-5-chloro-6-((3-(3-hydroxy-3-methylbuty l)-1-methyl-2-oxo-2,3-dihydro- 1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile as a white solid (12.2 mg, 24.27 µmol, 26% yield, 99 purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 0.76 (d, J = 6.60 Hz, 3H), 0.79 - 0.87 (m, 1H), 1.16 (s, 6H), 1.57 - 1.65 (m, 1H), 1.67 - 1.73 (m, 1H), 1.86 (br d, J = 12.23 Hz, 1H), 2.33 (br t, J = 12.10 Hz, 2H), 2.60 - 2.69 (m, 2H), 3.32 (br s, 2H), 3.86 - 3.92 (m, 2H), 4.04 (br d, J = 11.74 Hz, 1H), 4.16 - 4.22 (m, 1H), 7.10 (d, J = 8.44 Hz, 1H), 7.25 (dd, J = 8.44, 1.59 Hz, 1H), 7.38 (d, J = 1.47 Hz, 1H), 7.89 (s, 1H), 8.87 (s, 1H). [00481] The absolute configurations of compounds 35 & 36 were randomly assigned based on the amino group and methyl group being in cis-conformation. [00482] Example 26: Synthesis of chloro-5-cyanopyridin-2-yl)amino)-1-(oxetan-3-ylmethyl)-2- oxo-1,2-dihydroquinolin-3-yl)oxy)-N-methylacetamide (41) and 2-((6-((6-((3R,5S)-3-amino-4,4- difluoro-5-methylpiperidin-1-yl)-3-chloro-5-cyanopyridin-2-y l)amino)-1-(oxetan-3-ylmethyl)-2- oxo-1,2-dihydroquinolin-3-yl)oxy)-N-methylacetamide (42)
[00483] Methyl 2-((6-((3,6-dichloro-5-cyanopyridin-2-yl)amino)-1-(oxetan-3- ylmethyl)-2-oxo- 1,2-dihydroquinolin-3-yl)oxy)acetate [00484] To a solution of methyl 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-2-oxo-1H- quinolin-3-yl]oxy]acetate (3.5 g, 8.35 mmol) in DMSO (35 mL) was added K 2 CO 3 (2.31 g, 16.70 mmol) and 3-(iodomethyl)oxetane (1.65 g, 8.35 mmol). The mixture was stirred at 80°C for 12 hr. The reaction mixture was cooled to 15°C and water (20 mL) was added, forming a precipitate which was filtered and the filter cake was dried in vacuo to give the title compound as a yellow solid (4 g, crude). LCMS: [M+H] + = 489.0. [00485] 2-((6-((3,6-Dichloro-5-cyanopyridin-2-yl)amino)-1-(oxetan-3- ylmethyl)-2-oxo-1,2- dihydroquinolin-3-yl)oxy)acetic acid [00486] To a solution of methyl 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-1-(oxetan-3- ylmethyl)-2-oxo-3-quinolyl]oxy]acetate (4 g, 8.17 mmol) in EtOH (40 mL) and H2O (40 mL) was added LiOH . H2O (1.72 g, 40.87 mmol). The mixture was stirred at 25°C for 1 hr. The mixture was concentrated in vacuo to give the title compound as a yellow solid (4 g, crude). LCMS: [M+H] + = 474.9. [00487] 2-((6-((3,6-Dichloro-5-cyanopyridin-2-yl)amino)-1-(oxetan-3- ylmethyl)-2-oxo-1,2- dihydroquinolin-3-yl)oxy)-N-methylacetamide [00488] To a solution of 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-1-(oxetan-3-yl methyl)- 2-oxo-3-quinolyl]oxy]acetic acid (4 g, 8.42 mmol) and MeNH2 (1.14 g, 16.83 mmol, HCl) in DMF (30 mL) was added HATU (6.40 g, 16.83 mmol) and DIPEA (4.35 g, 33.66 mmol, 5.86 mL). The mixture was stirred at 25°C for 12 hr. Water (60 mL) was added and then the mixture was extracted with ethyl acetate (50 mL x2). The combined organic phase was washed with brine (100 mL), dried with anhydrous Na2SO4, filtered and concentrated in vacuo. The crude product was triturated with EtOAc (20 mL) at 25°C for 10 min to give the title compound as a yellow solid (1.2 g, 1.72 mmol, 20% yield, 70% purity). LCMS: [M+H] + = 488.2. [00489] 2-((6-((3-Chloro-5-cyano-6-(3-(1,3-dioxoisoindolin-2-yl)-4,4 -difluoro-5- methylpiperidin-1-yl)pyridin-2-yl)amino)-1-(oxetan-3-ylmethy l)-2-oxo-1,2-dihydroquinolin-3- yl)oxy)-N-methylacetamide [00490] To a solution of 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-1-(oxetan-3-yl methyl)- 2-oxo-3-quinolyl]oxy]-N-methylacetamide (200 mg, 409.57 µmol) and 2-(4,4-difluoro-5-methyl- 3-piperidyl)isoindoline-1,3-dione (114.79 mg, 409.57 µmol) in DMSO (2 mL) was added DIPEA (105.87 mg, 819.13 µmol, 142.68 µL). The mixture was stirred at 100°C for 12 hr. The mixture was cooled to 20°C and water (3 mL) was added. The mixture was filtered and the filter cake was concentrated in vacuo to get a residue which was purified by prep-HPLC (column: Waters Xbridge BEH C18100*30mm*10µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 40%-65%, 8min) to give the title compound as a yellow solid (100 mg, 136.59 µmol, 25% yield). [00491] 2-((6-((6-(3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-3-ch loro-5-cyanopyridin-2- yl)amino)-1-(oxetan-3-ylmethyl)-2-oxo-1,2-dihydroquinolin-3- yl)oxy)-N-methylacetamide (41) [00492] To a solution of 2-[[6-[[3-chloro-5-cyano-6-[3-(1,3-dioxoisoindolin-2-yl)-4,4 -difluoro- 5-methyl-1-piperidyl]-2-pyridyl]amino]-1-(oxetan-3-ylmethyl) -2-oxo-3 quinolyl]oxy]-N-methyl- acetamide (100 mg, 136.59 µmol) in EtOH (4 mL) was added NH 2 NH 2 . H 2 O (102.56 mg, 2.05 mmol, 99.58 µL). The mixture was stirred at 60°C for 1 hr. The mixture was cooled to 20°C and concentrated in vacuo. The residue was purified by prep-HPLC (column: Phenomenex C18 80*40mm*3µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 15%-45%, 8min) to give the title compound as a white solid (40 mg, 61.58 µmol, 45% yield, 93% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.08 (s, 1H), 8.00 (s, 1H), 7.91 - 7.97 (m, 2H), 7.60 - 7.66 (m, 1H), 7.52 - 7.57 (m, 1H), 7.36 (s, 1H), 4.66 (br d, J = 7.00 Hz, 2H), 4.57 - 4.63 (m, 2H), 4.48 - 4.56 (m, 4H), 4.21 - 4.31 (m, 1H), 4.11 (br d, J = 12.01 Hz, 1H), 3.43 (dt, J = 14.07, 7.10 Hz, 1H), 2.89 - 3.06 (m, 1H), 2.74 - 2.87 (m, 2H), 2.67 (d, J = 4.63 Hz, 3H), 1.98 - 2.18 (m, 1H), 1.77 (br d, J = 1.63 Hz, 2H), 0.86 (d, J = 6.63 Hz, 3H). [00493] 2-((6-((6-((3S,5R)-3-Amino-4,4-difluoro-5-methylpiperidin-1- yl)-3-chloro-5- cyanopyridin-2-yl)amino)-1-(oxetan-3-ylmethyl)-2-oxo-1,2-dih ydroquinolin-3-yl)oxy)-N- methylacetamide (41) and 2-((6-((6-((3R,5S)-3-amino-4,4-difluoro-5-methylpiperidin-1- yl)-3- chloro-5-cyanopyridin-2-yl)amino)-1-(oxetan-3-ylmethyl)-2-ox o-1,2-dihydroquinolin-3-yl)oxy)- N-methylacetamide (42) [00494] 2-[[6-[[6-(3-amino-4,4-difluoro-5-methyl-1-piperidyl)-3-chlo ro-5-cyano-2- pyridyl]amino]-1-(oxetan-3-ylmethyl)-2-oxo-3-quinolyl]oxy]-N -methyl-acetamide (40 mg, 66.44 µmol) was separated by SFC (column: DAICEL CHIRALCEL OD(250mm*30mm,10µm); mobile phase: [0.1%NH3H2O EtOH]; B%: 55%-55%, 10min) to give 2-[[6-[[6-[(3S,5R)-3-amino- 4,4-difluoro-5-methyl-1-piperidyl]-3-chloro-5-cyano-2-pyridy l]amino]-1-(oxetan-3-ylmethyl)-2- oxo-3-quinolyl]oxy]-N-methyl-acetamide as a white solid (12 mg, 19.73 µmol, 30% yield, 99% purity); 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.07 (s, 1H), 8.00 (s, 1H), 7.93 (br d, J = 1.79 Hz, 2H), 7.61 - 7.65 (m, 1H), 7.52 - 7.56 (m, 1H), 7.36 (s, 1H), 4.66 (br d, J = 6.91 Hz, 2H), 4.57 - 4.62 (m, 2H), 4.47 - 4.56 (m, 4H), 4.08 - 4.30 (m, 2H), 3.43 (dt, J = 14.04, 6.99 Hz, 1H), 3.30 (br s, 1H), 2.92 - 3.05 (m, 1H), 2.80 (td, J = 12.58, 7.27 Hz, 2H), 2.67 (d, J = 4.53 Hz, 3H), 1.99 - 2.17 (m, 1H), 1.77 (br s, 1H), 0.86 (d, J = 6.68 Hz, 3H); and 2-[[6-[[6-[(3R,5S)-3-amino-4,4-difluoro-5- methyl-1-piperidyl]-3-chloro-5-cyano-2-pyridyl]amino]-1-(oxe tan-3-ylmethyl)-2-oxo-3- quinolyl]oxy]-N-methyl-acetamide as a white solid; 1 H NMR (400 MHz, DMSO-d6) δ 9.07 (s, 1H), 8.00 (s, 1H), 7.91 - 7.97 (m, 2H), 7.60 - 7.66 (m, 1H), 7.52 - 7.57 (m, 1H), 7.36 (s, 1H), 4.66 (br d, J = 7.03 Hz, 2H), 4.57 - 4.63 (m, 2H), 4.49 - 4.56 (m, 4H), 4.07 - 4.30 (m, 2H), 3.39 - 3.48 (m, 1H), 3.30 (br s, 1H), 2.92 - 3.05 (m, 1H), 2.80 (td, J = 12.55, 7.21 Hz, 2H), 2.67 (d, J = 4.53 Hz, 3H), 1.99 - 2.15 (m, 1H), 1.72 - 1.90 (m, 1H), 0.86 (d, J = 6.68 Hz, 3H). [00495] The absolute configurations of compounds 41 & 42 were randomly assigned based on the amino group and methyl group being in cis-conformation. [00496] Example 27: Synthesis of 2-((3S,5R)-3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5- chloro-6-((3-(3-hydroxy-3-methylbutyl)-1-(oxetan-3-ylmethyl) -2-oxo-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile (37) and 2-((3R,5S)-3-amino-4,4-difluoro-5- methylpiperidin-1-yl)-5-chloro-6-((3-(3-hydroxy-3-methylbuty l)-1-(oxetan-3-ylmethyl)-2-oxo- 2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile (38)
[00497] 4-Nitro-N1-(oxetan-3-ylmethyl)benzene-1,2-diamine [00498] To a solution of 2-fluoro-5-nitro-aniline (2 g, 12.81 mmol) and oxetan-3-ylmethanamine (1.34 g, 15.37 mmol) in DMSO (20 mL) was added K 2 CO 3 (2.66 g, 19.22 mmol). The mixture was stirred at 100°C for 12 hr. Water (200 mL) was added and then the mixture was extracted with DCM (300 mL x4). The combined organic phase was dried with anhydrous Na2SO4, filtered and concentrated to give a residue which was purified by column chromatography (silica gel, Petroleum ether/Ethyl acetate = 5/1 to 0/1) to give the title compound as a white solid (2.5 g, 10.53 mmol, 82% yield, 94% purity). 1 H NMR (400 MHz, DMSO-d6, 25°C) δ 7.51 (dd, J = 8.82, 2.62 Hz, 1H), 7.40 (d, J = 2.62 Hz, 1H), 6.52 (d, J = 8.82 Hz, 1H), 5.93 (t, J = 5.01 Hz, 1H), 5.15 (s, 2H), 4.69 (dd, J = 7.51, 6.08 Hz, 2H), 4.31 (t, J = 5.90 Hz, 2H), 3.50 (dd, J = 7.27, 5.36 Hz, 2H), 3.20 - 3.28 (m, 1H). [00499] 6-Nitro-3-(oxetan-3-ylmethyl)-1H-benzimidazol-2-one [00500] A flask with mixture of 4-nitro-N1-(oxetan-3-ylmethyl)benzene-1,2-diamine (1 g, 4.48 mmol) and CDI (1.09 g, 6.72 mmol) in DMF (10 mL) was degassed and purged with N2 for 3 times, and the mixture was stirred at 15°C for 12 hr under N2 atmosphere. Then water (80 mL) was added and the mixture was extracted with ethyl acetate (45 mL x3). The combined organic phase was dried with anhydrous Na 2 SO 4 , filtered and concentrated to give a residue which was purified by column chromatography (silica gel, Petroleum ether/Ethyl acetate = 4/1 to 0/1) to give the title compound as a yellow solid (1.1 g, 4.10 mmol, 92% yield, 93% purity). 1 H NMR (400 MHz, DMSO-d 6 , 25°C) δ 8.00 (dd, J = 8.70, 2.26 Hz, 1H), 7.74 (d, J = 2.15 Hz, 1H), 7.41 (d, J = 8.70 Hz, 1H), 4.61 (dd, J = 7.63, 6.20 Hz, 2H), 4.41 (t, J = 6.08 Hz, 2H), 4.18 (d, J = 7.15 Hz, 2H), 3.33 - 3.44 (m, 1H). [00501] 3-(3-Hydroxy-3-methyl-butyl)-5-nitro-1-(oxetan-3-ylmethyl)be nzimidazol-2-one [00502] A flask with mixture of 6-nitro-3-(oxetan-3-ylmethyl)-1H-benzimidazol-2-one (1.3 g, 5.22 mmol), 3-hydroxy-3-methylbutyl 4-methylbenzenesulfonate (2.02 g, 7.83 mmol) and Cs2CO3 (5.10 g, 15.66 mmol) in DMF (10 mL) was degassed and purged with N2 for 3 times, and the mixture was stirred at 100°C for 2 hr under N 2 atmosphere. Then water (60 mL) was added and the mixture was extracted with ethyl acetate (50 mL x3). The combined organic phase was dried with anhydrous Na2SO4, filtered and concentrated to give a residue which was purified by column chromatography (silica gel, Petroleum ether/Ethyl acetate = 3/1 to 0/1) to give the title compound as a yellow solid (1 g, 92% purity). 1 H NMR (400 MHz, DMSO-d 6 , 25°C) δ 8.05 (dd, J = 8.69, 2.06 Hz, 1H), 8.00 (d, J = 2.00 Hz, 1H), 7.48 (d, J = 8.63 Hz, 1H), 4.61 (dd, J = 7.63, 6.25 Hz, 2H), 4.51 (s, 1H), 4.40 (t, J = 6.07 Hz, 2H), 4.23 (d, J = 7.13 Hz, 2H), 3.96 - 4.02 (m, 2H), 3.39 (dt, J = 13.91, 6.86 Hz, 1H), 1.70 - 1.76 (m, 2H), 1.16 (s, 6H). [00503] 5-Amino-3-(3-hydroxy-3-methyl-butyl)-1-(oxetan-3-ylmethyl)be nzimidazol-2-one [00504] To a mixture of Pd/C (200 mg, 10% purity) in DMF (10 mL) was added 3-(3-hydroxy- 3-methyl-butyl)-5-nitro-1-(oxetan-3-ylmethyl)benzimidazol-2- one (1 g, 2.98 mmol). The mixture was stirred at 15°C for 12 hr under H2 (15 psi). The mixture was added Celite® and filtered to give a filtrate which was concentrated in vacuo to give the title compound as a red solid (900 mg, 2.71 mmol, 91% yield, 92% purity). 1 H NMR (400 MHz, DMSO-d 6 , 25°C) δ 6.85 (d, J = 8.25 Hz, 1H), 6.38 (d, J = 1.88 Hz, 1H), 6.30 (dd, J = 8.25, 2.00 Hz, 1H), 4.81 (br s, 2H), 4.58 (dd, J = 7.75, 6.13 Hz, 2H), 4.47 (s, 1H), 4.38 (t, J = 6.07 Hz, 2H), 4.01 (d, J = 7.00 Hz, 2H), 3.74 - 3.86 (m, 2H), 3.27 - 3.35 (m, 1H), 1.58 - 1.73 (m, 2H), 1.16 (s, 6H). [00505] 2,5-Dichloro-6-[[3-(3-hydroxy-3-methyl-butyl)-1-(oxetan-3-yl methyl)-2-oxo- benzimidazol-5-yl]amino]pyridine-3-carbonitrile [00506] A flask with mixture of 5-amino-3-(3-hydroxy-3-methyl-butyl)-1-(oxetan-3-ylmethyl) benzimidazol-2-one (800 mg, 2.62 mmol), 2,5,6-trichloropyridine-3-carbonitrile (543.46 mg, 2.62 mmol) and DIEA (677.17 mg, 5.24 mmol, 912.63 µL) in DMF (9 mL) was degassed and purged with N2 for 3 times, then the mixture was stirred at 100°C for 1 hr under N2 atmosphere. The mixture was concentrated in vacuo without further work-up. The residue was purified by prep- HPLC (column: Welch Xtimate C18250*70mm#10µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 30%-60%, 20min) to give the title compound as a white solid (700 mg, 1.40 mmol, 53% yield, 95% purity). 1 H NMR (400 MHz, DMSO-d6, 25°C) δ 9.54 (s, 1H), 8.35 (s, 1H), 7.35 (d, J = 1.67 Hz, 1H), 7.22 - 7.26 (m, 1H), 7.16 - 7.19 (m, 1H), 4.62 (dd, J = 7.69, 6.14 Hz, 2H), 4.42 - 4.44 (m, 2H), 4.40 (s, 1H), 4.14 (d, J = 7.03 Hz, 2H), 3.85 - 3.92 (m, 2H), 3.35 - 3.45 (m, 1H), 1.65 - 1.77 (m, 2H), 1.17 (s, 6H). [00507] 5-Chloro-2-((3S,5R)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluor o-5-methylpiperidin-1- yl)-6-((3-(3-hydroxy-3-methylbutyl)-1-(oxetan-3-ylmethyl)-2- oxo-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile [00508] A flask with mixture of 2,5-dichloro-6-[[3-(3-hydroxy-3-methyl-butyl)-1-(oxetan-3- ylmethyl)-2-oxo-benzimidazol-5-yl]amino]pyridine-3-carbonitr ile (150 mg, 314.89 µmol), 2- ((3S,5R)-4,4-difluoro-5-methylpiperidin-3-yl)isoindoline-1,3 -dione (88.25 mg, 314.89 µmol) and DIEA (203.49 mg, 1.57 mmol, 274.24 µL) in DMSO (1.5 mL) was degassed and purged with N2 for 3 times, and then the mixture was stirred at 100°C for 12 hr under N2 atmosphere. The mixture was concentrated in vacuo without further work-up. The residue was purified by prep-HPLC (column: Waters Xbridge BEH C18100*30mm*10µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 40%-60%, 8min) to give the title compound as a yellow solid (170 mg, 228.98 µmol, 73% yield, 97% purity). LCMS: [M+H] + = 720.0. [00509] 2-((3S,5R)-3-Amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-ch loro-6-((3-(3-hydroxy-3- methylbutyl)-1-(oxetan-3-ylmethyl)-2-oxo-2,3-dihydro-1H-benz o[d]imidazol-5- yl)amino)nicotinonitrile (37) [00510] To a solution of 5-chloro-2-((3S,5R)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluor o-5- methylpiperidin-1-yl)-6-((3-(3-hydroxy-3-methylbutyl)-1-(oxe tan-3-ylmethyl)-2-oxo-2,3- dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile (170 mg, 236.06 µmol) in EtOH (10 mL) was added MeNH 2 /H 2 O (10 mL, 40% purity). The mixture was stirred at 70°C for 1 hr. The mixture was concentrated in vacuo and purified directly with prep-HPLC (column: Phenomenex C1880*40mm*3µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 20%-50%, 8min) to give the title compound as a white solid (35 mg, 55.76 µmol, 24% yield, 94% purity). 1 H NMR (400 MHz, DMSO-d6, 22°C) δ 7.97 (s, 1H), 7.29 (s, 1H), 7.23 (s, 2H), 4.61 (s, 2H), 4.50 (s, 1H), 4.42 (s, 2H), 4.15 (s, 3H), 3.97 (br s, 1H), 3.89 (br s, 2H), 3.36 - 3.46 (m, 2H), 2.77 - 2.91 (m, 2H), 2.64 - 2.71 (m, 1H), 1.92 - 2.09 (m, 1H), 1.68 - 1.73 (m, 2H), 1.66 (br s, 1H), 1.16 (d, J = 0.73 Hz, 6H), 0.76 (d, J = 6.72 Hz, 3H). [00511] 5-Chloro-2-((3R,5S)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluor o-5-methylpiperidin-1- yl)-6-((3-(3-hydroxy-3-methylbutyl)-1-(oxetan-3-ylmethyl)-2- oxo-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile [00512] A flask with mixture of 2,5-dichloro-6-[[3-(3-hydroxy-3-methyl-butyl)-1-(oxetan-3- ylmethyl)-2-oxo-benzimidazol-5-yl]amino]pyridine-3-carbonitr ile (150 mg, 314.89 µmol), 2- ((3R,5S)-4,4-difluoro-5-methylpiperidin-3-yl)isoindoline-1,3 -dione (88.25 mg, 314.89 µmol) and DIEA (203.49 mg, 1.57 mmol, 274.24 µL) in DMSO (1.5 mL) was degassed and purged with N 2 for 3 times, and then the mixture was stirred at 100°C for 12 hr under N2 atmosphere. The mixture was concentrated in vacuo without further work-up. The residue was purified by prep-HPLC (column: Waters Xbridge BEH C18100*30mm*10µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 40%-60%, 8min) to give the title compound as a white solid (150 mg, 202.04 µmol, 64% yield, 97% purity). LCMS: [M+H] + = 720.0. [00513] 2-((3R,5S)-3-Amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-ch loro-6-((3-(3-hydroxy-3- methylbutyl)-1-(oxetan-3-ylmethyl)-2-oxo-2,3-dihydro-1H-benz o[d]imidazol-5- yl)amino)nicotinonitrile (38) [00514] To a solution of 5-chloro-2-((3R,5S)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluor o-5- methylpiperidin-1-yl)-6-((3-(3-hydroxy-3-methylbutyl)-1-(oxe tan-3-ylmethyl)-2-oxo-2,3- dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile (150 mg, 208.29 µmol) in EtOH (10 mL) was added MeNH2/H2O (10 mL, 40% purity). The mixture was stirred at 70°C for 1 hr. The mixture was concentrated in vacuo and purified directly with prep-HPLC (column: Phenomenex C1880*40mm*3µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 20%-50%, 8min) to give the title compound as a white solid (30 mg, 50.33 µmol, 24% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d6, 22°C) δ 9.02 (s, 1H), 7.96 (s, 1H), 7.28 (s, 1H), 7.22 (s, 2H), 4.60 (dd, J = 7.76, 6.05 Hz, 2H), 4.49 (s, 1H), 4.41 (t, J = 6.05 Hz, 2H), 4.11 - 4.19 (m, 3H), 3.94 (br dd, J = 13.51, 2.14 Hz, 1H), 3.85 - 3.91 (m, 2H), 3.35 - 3.43 (m, 2H), 2.78 - 2.91 (m, 2H), 2.63 - 2.70 (m, 1H), 1.94 - 2.09 (m, 1H), 1.67 - 1.72 (m, 2H), 1.65 (br s, 1H), 1.15 (s, 6H), 0.75 (d, J = 6.72 Hz, 3H). [00515] The absolute configurations of compounds 37 & 38 were randomly assigned based on the amino group and methyl group being in cis-conformation. [00516] Example 28: Synthesis of 2-((1-(2-aminoethyl)-6-((3-chloro-5-cyano-6-((3S,4S,5R)-4- fluoro-3,5-dimethylpiperidin-1-yl)pyridin-2-yl)amino)-2-oxo- 1,2-dihydroquinolin-3-yl)oxy)-N- methylacetamide (66) [00517] Methyl 2-((1-(2-((tert-butoxycarbonyl)amino)ethyl)-6-nitro-2-oxo-1, 2- dihydroquinolin-3-yl)oxy)acetate [00518] A flask with mixture of methyl 2-[(6-nitro-2-oxo-1H-quinolin-3-yl)oxy]acetate (500 mg, 1.80 mmol), tert-butyl N-(2-bromoethyl)carbamate (2.01 g, 8.99 mmol), K2CO3 (496.77 mg, 3.59 mmol) and KI (149.16 mg, 898.58 µmol, 0.5 eq) in DMSO (10 mL) was degassed and purged with N2 for 3 times, and the mixture was stirred at 80°C for 2 hr under N2 atmosphere. Then water (60 mL) was added and the mixture was extracted with ethyl acetate (50mL x3). The combined organic phase was dried with anhydrous Na 2 SO 4 , filtered and concentrated to give the title compound as a brown oil (1 g, crude). LCMS: [M+H] + = 422.2. [00519] 2-((1-(2-((tert-Butoxycarbonyl)amino)ethyl)-6-nitro-2-oxo-1, 2-dihydroquinolin-3- yl)oxy)acetic acid [00520] To a solution of methyl 2-((1-(2-((tert-butoxycarbonyl)amino)ethyl)-6-nitro-2-oxo-1, 2- dihydroquinolin-3-yl)oxy)acetate (800 mg, 1.90 mmol) in EtOH (4 mL) and H2O (4 mL) was added LiOH . H 2 O (159.33 mg, 3.80 mmol) and then the mixture was stirred at 20°C for 1 hr. The mixture was concentrated in vacuo to give the title compound as a yellow solid (800 mg, crude). LCMS: [M+H] + = 408.0. [00521] tert-Butyl (2-(3-(2-(methylamino)-2-oxoethoxy)-6-nitro-2-oxoquinolin-1( 2H)-yl) ethyl)carbamate [00522] To a solution of 2-((1-(2-((tert-butoxycarbonyl)amino)ethyl)-6-nitro-2-oxo-1, 2- dihydroquinolin-3-yl)oxy)acetic acid (800 mg, 1.96 mmol), methenamine (530.37 mg, 7.86 mmol, HCl), HATU (1.49 g, 3.93 mmol) and DIEA (1.02 g, 7.86 mmol, 1.37 mL) in DMF (6 mL) and the mixture was stirred at 20°C for 1 hr. Then water (40 mL) was added and the mixture was extracted with ethyl acetate (30 mL x2). The combined organic phase was dried with anhydrous Na 2 SO 4 , filtered and concentrated to give the title compound as a yellow oil (800 mg, 1.09 mmol, 56% yield, 57% purity). LCMS: [M+H] + = 421.2. [00523] tert-Butyl (2-(6-amino-3-(2-(methylamino)-2-oxoethoxy)-2-oxoquinolin-1( 2H)-yl) ethyl)carbamate [00524] To a solution of Pd/C (0.1 g, 10% purity) in DMF (15 mL) was added tert-butyl (2-(3- (2-(methylamino)-2-oxoethoxy)-6-nitro-2-oxoquinolin-1(2H)-yl )ethyl)carbamate (600 mg, 1.43 mmol) under Ar. The mixture was stirred at 50°C for 12 hr under H2 (50 psi). The mixture was filtered and the filtrate was concentrated in vacuo without further work-up. The residue was purified by prep-HPLC (column: Waters Xbridge BEH C18 250*50mm*10µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 15%-45%, 10min) to give the title compound as a white solid (90 mg, 187.91 µmol, 13% yield, 82% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 1.37 (s, 9H), 2.67 - 2.72 (m, 3H), 3.37 (br d, J = 5.87 Hz, 2H), 4.31 (br t, J = 5.44 Hz, 2H), 4.56 (s, 2H), 5.22 (br s, 2H), 6.70 (d, J = 2.45 Hz, 1H), 6.88 (dd, J = 8.80, 2.45 Hz, 1H), 7.01 (br t, J = 5.44 Hz, 1H), 7.25 (s, 1H), 7.38 (d, J = 8.80 Hz, 1H), 7.84 (br d, J = 4.03 Hz, 1H). [00525] tert-Butyl (2-(6-amino-3-(2-(methylamino)-2-oxoethoxy)-2-oxoquinolin-1( 2H)- yl)ethyl)carbamate [00526] A flask with mixture of tert-butyl (2-(6-amino-3-(2-(methylamino)-2-oxoethoxy)-2- oxoquinolin-1(2H)-yl)ethyl)carbamate (60 mg, 153.68 µmol), 2,5,6-trichloropyridine-3- carbonitrile (31.88 mg, 153.68 µmol) and DIEA (39.72 mg, 307.35 µmol, 53.54 µL) in DMF (1 mL) was degassed and purged with N2 for 3 times, and the mixture was stirred at 100°C for 12 hr under N 2 atmosphere. Then water (15mL) was added and the mixture was filtered to give a filter cake which was dried under vacuum to give the title compound as a grey solid (60 mg, 56.98 µmol, 37% yield, 53% purity). LCMS: [M+H] + = 561.2. [00527] tert-Butyl (2-(6-((3-chloro-5-cyano-6-((3S,4S,5R)-4-fluoro-3,5-dimethyl piperidin-1- yl)pyridin-2-yl)amino)-3-(2-(methylamino)-2-oxoethoxy)-2-oxo quinolin-1(2H)- yl)ethyl)carbamate [00528] A flask with mixture of tert-butyl (2-(6-amino-3-(2-(methylamino)-2-oxoethoxy)-2- oxoquinolin-1(2H)-yl)ethyl)carbamate (60.00 mg, 106.87 µmol), (3S,4S,5R)-4-fluoro-3,5- dimethyl-piperidine (53.75 mg, 320.62 µmol, HCl) and DIEA (138.13 mg, 1.07 mmol, 186.15 µL) in DMSO (1 mL) was degassed and purged with N2 for 3 times, and the mixture was stirred at 100°C for 2 hr under N 2 atmosphere. Then water (20 mL) was added and the mixture was filtered to give a filter cake which was dried under vacuum to give the title compound as a grey solid (60 mg, 62.78 µmol, 59% yield, 69% purity). LCMS: [M-56] + =600.2, [M-100] + = 556.3. [00529] 2-((1-(2-Aminoethyl)-6-((3-chloro-5-cyano-6-((3S,4S,5R)-4-fl uoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-2-oxo-1,2-dihydro quinolin-3-yl)oxy)-N- methylacetamide (66) [00530] A solution of tert-butyl (2-(6-((3-chloro-5-cyano-6-((3S,4S,5R)-4-fluoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-3-(2-(methylamino )-2-oxoethoxy)-2-oxoquinolin- 1(2H)-yl)ethyl)carbamate (60 mg, 91.44 µmol) in HCl/EtOAc (4 M, 6 mL) was stirred at 20°C for 1hr. The mixture was concentrated in vacuo without further work-up. The residue was purified by prep-HPLC (column: Phenomenex Luna 80*30mm*3µm; mobile phase: [water(HCl)- ACN]; B%: 20%-50%, 8min) to give the title compound as a yellow solid (45 mg, 74.12 µmol, 11% yield, 98% purity, HCl). 1 H NMR (400 MHz, DMSO-d6) δ 0.86 (d, J = 6.85 Hz, 6H), 1.74 - 1.95 (m, 2H), 2.67 (d, J = 4.65 Hz, 3H), 2.79 (t, J = 12.65 Hz, 2H), 3.08 (d, J = 5.87 Hz, 2H), 3.99 (dd, J = 12.59, 3.79 Hz, 2H), 4.53 - 4.58 (m, 4H), 7.25 - 7.27 (m, 1H), 7.63 - 7.66 (m, 2H), 7.85 - 7.88 (m, 1H), 7.95 - 8.01 (m, 2H), 8.12 (s, 3H), 9.07 - 9.12 (m, 1H). [00531] Example 29: Synthesis of 2-((6-((3-chloro-5-cyano-6-((3S,4S,5R)-4-fluoro-3,5- dimethylpiperidin-1yl)pyridine-2-yl)amino)-1-(2-hydroxy-3-(m ethylamino)propyl)-2-oxo-1,2- dihydroquinolin-3-yl)oxy)-N-methylacetamide (67) [00532] tert-Butyl 2-((6-((3,6-dichloro-5-cyanopyridin-2-yl)amino)-3-(2-methoxy -2- oxoethoxy)-2-oxoquinolin-1(2H)-yl)methyl)morpholine-4-carbox ylate [00533] To a solution of methyl 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-2-oxo-1H- quinolin-3-yl]oxy]acetate (2 g, 4.77 mmol) and tert-butyl 2-(bromomethyl)morpholine-4- carboxylate (1.47 g, 5.25 mmol) in DMSO (25 mL) was added K2CO3 (1.32 g, 9.54 mmol) and KI (395.98 mg, 2.39 mmol). The mixture was stirred at 80°C for 4 hr. The mixture was added water (50 mL) and extracted with ethyl acetate (50 mL x3). The combined organic phase was dried with anhydrous Na 2 SO 4 , filtered and concentrated under reduced pressure to give the title compound as a white solid (2.9 g, crude). LCMS: [M+H] + = 618.1. [00534] 2-((1-((4-(tert-Butoxycarbonyl)morpholin-2-yl)methyl)-6-((3, 6-dichloro-5- cyanopyridin-2-yl)amino)-2-oxo-1,2-dihydroquinolin-3-yl)oxy) acetic acid [00535] To a solution of tert-butyl 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-3-(2- methoxy-2-oxo-ethoxy)-2-oxo-1-quinolyl]methyl]morpholine-4-c arboxylate (2.9 g, 4.69 mmol) in EtOH (20 mL) and H2O (20 mL) was added LiOH . H2O(255.80 mg, 6.10 mmol). The mixture was stirred at 20°C for 12 hr. The mixture was purified by prep-HPLC (column: Agela DuraShell C18 250*80mm*10µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 30%-60%, 20 min) to give the title compound as a white solid. 1 H NMR (400 MHz, DMSO-d6) = 9.67 (s, 1H), 8.38 (s, 1H), 7.73 (s, 1H), 7.63 (s, 2H), 7.16 (s, 1H), 4.52 - 4.14 (m, 4H), 3.84 - 3.56 (m, 4H), 3.17- 2.67 (m, 4H), 1.38 (s, 9H). [00536] tert-Butyl 2-((6-((3,6-dichloro-5-cyanopyridin-2-yl)amino)-3-(2-(methyl amino)-2- oxoethoxy)-2-oxoquinolin-1(2H)-yl)methyl)morpholine-4-carbox ylate [00537] To a solution of 2-[[1-[(4-tert-butoxycarbonylmorpholin-2-yl)methyl]-6-[(3,6- dichloro- 5-cyano-2-pyridyl)amino]-2-oxo-3-quinolyl]oxy]acetic acid (1 g, 1.65 mmol) and methenamine (223.41 mg, 3.31 mmol, HCl) in DMF (10 mL) was added HATU (1.26 g, 3.31 mmol) and DIPEA (855.29 mg, 6.62 mmol, 1.15 mL). The mixture was stirred at 25°C for 12 hr. Water (10 mL) was added to the mixture, forming a precipitate which was filtered and the filter cake was washed with water (20 mL x2), PE (20 mL x2), the filter cake was dried under reduced pressure to give the title compound as a white solid. LCMS: [M+H] + = 617.2. [00538] tert-Butyl (3-(6-((3-chloro-5-cyano-6-((3S,4S,5R)-4-fluoro-3,5-dimethyl piperidin-1- yl)pyridin-2-yl)amino)-3-(2-(methylamino)-2-oxoethoxy)-2-oxo quinolin-1(2H)-yl)-2- methylpropyl)carbamate [00539] To a solution of tert-butyl 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-3-[2- (methylamino)-2-oxo-ethoxy]-2-oxo-1-quinolyl]methyl]morpholi ne-4-carboxylate (100 mg, 161.95 µmol) and (3S,4S,5R)-4-fluoro-3,5-dimethyl-piperidine (32.58 mg, 194.34 µmol, HCl) in DMSO (1 mL) was added DIPEA (62.79 mg, 485.85 µmol, 84.63 µL). The mixture was stirred at 100°C for 2 hr. Water (5 mL) was added to the mixture, forming a precipitate which was filtered and the filter cake was washed with water (10 mL x2) and EA(10 mL x2). The filter cake was dried under reduced pressure to give the title compound as a white solid (90 mg, 126.37 µmol, 78% yield). LCMS: [M+H] + = 712.3. [00540] 2-((6-((3-Chloro-5-cyano-6-((3S,4S,5R)-4-fluoro-3,5-dimethyl piperidin-1-yl)pyridin- 2-yl)amino)-1-(2-hydroxy-3-(methylamino)propyl)-2-oxo-1,2-di hydroquinolin-3-yl)oxy)-N- methylacetamide (67) [00541] A solution of tert-butyl 2-[[6-[[3-chloro-5-cyano-6-[(3S,4S,5R)-4-fluoro-3,5-dimethyl - 1-piperidyl]-2-pyridyl]amino]-3-[2-(methylamino)-2-oxo-ethox y]-2-oxo-1- quinolyl]methyl]morpholine-4-carboxylate (330 mg, 463.35 µmol) in HCl/EtOAc (4 mL, 4 M) was stirred at 25°C for 1 hr. The reaction mixture was concentrated under reduced pressure and the residue was purified by prep-HPLC (column: Phenomenex Luna 80*30mm*3µm; mobile phase: [water(HCl)-ACN]; B%: 20%-50%,8 min) to give the title compound as a white solid (30 mg, 45.74 µmol, 10% yield, 99% purity, HCl). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.61-9.59 (m, 1H), 9.52-9.50 (m, 1H), 9.08 - 9.05 (m, 1H), 8.03 (d, J = 4.4 Hz, 1H), 7.95 - 7.94 (m, 1H), 7.82 - 7.81 (m, 1H), 7.65 - 7.62 (m, 1H), 7.58 - 7.56 (m, 1H), 7.25 - 7.24 (m, 1H), 4.55 (s, 2H), 4.43 - 4.41 (m, 1H), 4.18 - 4.15 (m, 2H), 3.99 (d, J = 13.2 Hz, 2H), 3.88 (d, J = 12.8 Hz, 1H), 3.68-3.65 (m, 1H), 3.34 (d, J = 12.4 Hz, 1H), 3.13 (br d, J = 12.0 Hz, 1H), 3.03 - 2.93 (m, 2H), 2.83 - 2.72 (m, 2H), 2.67 (d, J = 4.8 Hz, 3H), 1.90 - 1.73 (m, 2H), 0.89 - 0.85 (m, 6H). [00542] Example 30: Synthesis of 2-((6-((3-chloro-5-cyano-6-((3S,4S,5R)-4-fluoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-1-(2-morpholinoet hyl)-2-oxo-1,2-dihydroquinolin-3- yl)oxy)-N-methylacetamide (68) [00543] 2-(4,4-Difluoro-3-hydroxy-5-methylpiperidin-1-yl)-5-fluoro-6 -((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile [00544] To a solution of methyl 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-2-oxo-1H- quinolin-3-yl]oxy]acetate (3 g, 7.16 mmol) in NMP (3 mL) and EtOH (27 mL) was added MeNH2 (4.44 g, 57.25 mmol, 40% purity) .The mixture was stirred at 70°C for 12 hr. The reaction mixture was cooled to 20°C, and EtOH (90 mL) was added. The suspension was filtered and the filter cake was dried under reduced pressure to give the title compound as a yellow solid (2.6 g, 5.41 mmol, 76% yield, 87% purity). LCMS: [M+H] + = 418.0. [00545] 2-((6-((3-chloro-5-cyano-6-(4-fluoro-3,5-dimethylpiperidin-1 -yl)pyridin-2-yl)amino)- 2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-methylacetamide [00546] To a solution of 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-2-oxo-1H-quino lin-3- yl]oxy]-N-methyl-acetamide (500 mg, 1.20 mmol) and (3R,5S)-4-fluoro-3,5-dimethyl-piperidine (300.64 mg, 1.79 mmol, HCl) in DMSO (1 mL) was added DIEA (618.04 mg, 4.78 mmol, 832.94 µL). The mixture was stirred at 100°C for 2 hr. The reaction mixture was treated with water (20 mL), forming a precipitate which was filtered. The filter cake was washed with EtOAc (30 mL), then the filter cake was dried under reduce pressure to give the title compound as a brown solid (600 mg, 818.77 µmol, 68% yield, 70% purity). LCMS: [M+H] + = 513.3. [00547] 2-[[6-[[3-Chloro-5-cyano-6-[(3R,5S)-4-fluoro-3,5-dimethyl-1- piperidyl]-2- pyridyl]amino]-1-(2-morpholinoethyl)-2-oxo-3-quinolyl]oxy]-N -methyl-acetamide (68) [00548] To a solution of 2-[[6-[[3-chloro-5-cyano-6-[(3R,5S)-4-fluoro-3,5-dimethyl-1- piperidyl]-2-pyridyl]amino]-2-oxo-1H-quinolin-3-yl]oxy]-N-me thyl-acetamide (200 mg, 389.89 µmol) and 4-(2-bromoethyl)morpholine (189.17 mg, 974.73 µmol) in DMSO (2 mL) was added Cs2CO3 (254.07 mg, 779.78 µmol) and KI (32.36 mg, 194.95 µmol). The mixture was stirred at 80°C for 5 hr. The reaction mixture was treated with water (30 mL), forming a precipitate which was filtered. The filter cake was washed with EtOAc (30 mL), collected and dried under reduced pressure to give a residue which was purified by prep-HPLC (column: Phenomenex Luna 80*30mm*3µm; mobile phase: [water(HCl)-ACN]; B%: 25%-55%, 8min) and further separated by SFC (column: DAICEL CHIRALPAK IG (250mm*30mm,10µm); mobile phase: [0.1%NH3H2O EtOH]; B%: 50%-50%, 10min) to give the title compound as a white solid (18 mg, 23.29 µmol, 29% yield, 81% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.07 (s, 1H), 7.88 - 8.01 (m, 2H), 7.78 (br s, 1H), 7.66 (dd, J = 9.13, 2.38 Hz, 1H), 7.49 (br d, J = 9.13 Hz, 1H), 7.22 (s, 1H), 4.52 - 4.58 (m, 2H), 4.43 (br s, 2H), 3.98 (br dd, J = 12.94, 3.69 Hz, 2H), 3.58 (br s, 4H), 3.30 (br s, 1H), 2.79 (br t, J = 12.69 Hz, 2H), 2.67 (d, J = 4.63 Hz, 3H), 2.52 - 2.53 (m, 4H), 1.75 - 1.93 (m, 2H), 1.23 (s, 2H), 0.85 (d, J = 6.88 Hz, 6H). [00549] Example 31: Synthesis of 2-((1-(3-aminopropyl)-6-((3-chloro-5-cyano-6-((3S,4S,5R)- 4-fluoro-3,5-dimethylpiperidin-1-yl)pyridin-2-yl)amino)-2-ox o-1,2-dihydroquinolin-3-yl)oxy)- N-methylacetamide (69) [00550] Methyl 2-((1-(3-((tert-butoxycarbonyl)amino)propyl)-6-((3,6-dichlor o-5-cyanopyridin- 2-yl)amino)-2-oxo-1,2-dihydroquinolin-3-yl)oxy)acetate [00551] To a solution of methyl 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-2-oxo-1H- quinolin-3-yl]oxy]acetate (1 g, 2.39 mmol) and tert-butyl N-(3-bromopropyl)carbamate (852.02 mg, 3.58 mmol) in DMSO (10 mL) was added K 2 CO 3 (659.35 mg, 4.77 mmol, 359.55 µL). The mixture was stirred at 80°C for 12 hr. Another batch of tert-butyl N-(3-bromopropyl)carbamate (568.01 mg, 2.39 mmol) was added and stirred at 80°C for 12 hr. The mixture was treated with water (10 mL), forming a precipitate which was filtered and the filter cake was collected and dried in vacuo to give the title compound as a yellow solid (1.4 g, crude). LCMS: [M+H] + = 576.0. [00552] 2-((1-(3-((tert-Butoxycarbonyl)amino)propyl)-6-((3,6-dichlor o-5-cyanopyridin-2- yl)amino)-2-oxo-1,2-dihydroquinolin-3-yl)oxy)acetic acid [00553] To a solution of methyl 2-[[1-[3-(tert-butoxycarbonylamino)propyl]-6-[(3,6-dichloro- 5-cyano-2-pyridyl)amino]-2-oxo-3-quinolyl]oxy]acetate (1.4 g, 2.43 mmol) in EtOH (16 mL) and H2O (16 mL) was added LiOH . H2O (203.84 mg, 4.86 mmol). The mixture was stirred at 25°C for 12 hr. The reaction mixture was concentrated under reduced pressure to give the title compound as a yellow solid (1.5 g, crude). LCMS: [M+H] + = 562.1. [00554] tert-Butyl(3-(6-((3,6-dichloro-5-cyanopyridin-2-yl)amino)-3- (2-(methylamino)-2- oxoethoxy)-2-oxoquinolin-1(2H)-yl)propyl)carbamate [00555] To a solution of 2-[[1-[3-(tert-butoxycarbonylamino)propyl]-6-[(3,6-dichloro- 5-cyano- 2-pyridyl)amino]-2-oxo-3-quinolyl]oxy]acetic acid (2.2 g, 3.91 mmol) and methenamine (396.17 mg, 5.87 mmol, HCl) in DMF (22 mL) was added HATU (2.97 g, 7.82 mmol) and DIPEA (2.02 g, 15.65 mmol, 2.73 mL). The mixture was stirred at 25°C for 12 hr. The reaction mixture was treated with water (30 mL) and extracted with EtOAc (30 mL x3). The combined organic layers were washed with brine, dried over anhydrous Na2SO4, filtered and concentrated under reduced pressure to give a residue which was purified by flash silica gel column chromatography (Silica Flash Column, Eluent of 0~100 % DMF/Ethyl acetate ether gradient) and further purified by prep- HPLC (column: Welch Xtimate C18250*70mm*10µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 30%-60%, 20min) to give the title compound as a yellow solid (180 mg, 303.42 µmol, 8% yield, 97% purity). [00556] tert-Butyl(3-(6-((3-chloro-5-cyano-6-((3S,4S,5R)-4-fluoro-3, 5-dimethylpiperidin-1- yl)pyridin-2-yl)amino)-3-(2-(methylamino)-2-oxoethoxy)-2-oxo quinolin-1(2H)- yl)propyl)carbamate [00557] To a solution of tert-butyl N-[3-[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-3-[2- (methylamino)-2-oxo-ethoxy]-2-oxo-1-quinolyl]propyl]carbamat e (130 mg, 225.91 µmol) and (3S,4S,5R)-4-fluoro-3,5-dimethyl-piperidine (75.75 mg, 451.83 µmol, HCl) in DMSO (2 mL) was added DIPEA (116.79 mg, 903.65 µmol, 157.40 µL). The mixture was stirred at 100°C for 12 hr. The reactant mixture was treated with water (2 mL), forming a precipitate which was filtered and dried under reduced pressure to give the title compound as an orange-red oil (130 mg). 1 H NMR (400 MHz, DMSO-d6) = 9.07 (s, 1H), 7.94 (s, 1H), 7.80 (br s, 1H), 7.63 (br dd, J = 9.00, 2.09 Hz, 1H), 7.48 (br d, J = 9.18 Hz, 1H), 7.21 (s, 1H), 6.93 (br t, J = 5.19 Hz, 1H), 4.53 (s, 2H), 4.28 (br t, J = 7.27 Hz, 2H), 3.97 (br dd, J = 13.17, 3.76 Hz, 2H), 3.04 (q, J = 6.20 Hz, 2H), 2.78 (br t, J = 12.58 Hz, 2H), 2.66 (d, J = 4.53 Hz, 3H), 1.87 (br s, 1H), 1.72 - 1.82 (m, 3H), 1.39 (s, 9H), 0.92 - 1.03 (m, 1H), 0.80 - 0.89 (m, 6H). [00558] 2-((1-(3-Aminopropyl)-6-((3-chloro-5-cyano-6-((3S,4S,5R)-4-f luoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-2-oxo-1,2-dihydro quinolin-3-yl)oxy)-N- methylacetamide (69) [00559] To a solution of tert-butyl N-[3-[6-[[3-chloro-5-cyano-6-[(3S,4S,5R)-4-fluoro-3,5- dimethyl-1-piperidyl]-2-pyridyl]amino]-3-[2-(methylamino)-2- oxo-ethoxy]-2-oxo-1- quinolyl]propyl]carbamate (100 mg, 149.22 µmol) in HCl/EtOAc (10 mL). The mixture was stirred at 20°C for 0.5 hr . The reaction mixture was concentrated under reduced pressure to give a residue which was purified by prep-HPLC (column: Phenomenex C1880*40mm*3µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 28%-58%, 8min) to give the title compound as a yellow solid (26 mg, 43.33 µmol, 29% yield, 95% purity). 1 H NMR (400 MHz, DMSO-d6) δ 8.94 - 9.19 (m, 1H), 7.92 - 8.00 (m, 2H), 7.80 (br s, 1H), 7.64 (br d, J = 8.23 Hz, 1H), 7.55 (br d, J = 8.34 Hz, 1H), 7.22 (br s, 1H), 4.53 (br s, 2H), 4.34 (br s, 2H), 3.97 (br d, J = 11.68 Hz, 2H), 2.78 (br t, J = 12.52 Hz, 2H), 2.60 - 2.68 (m, 5H), 1.66 - 1.93 (m, 5H), 0.84 (br d, J = 6.44 Hz, 6H).
[00560] Example 32: Synthesis of 5-chloro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((1-methyl-3-((S)-morpholin-2-ylmethoxy)-2-oxo-1,2-dihydro quinolin-6- yl)amino)nicotinonitrile (70) and 5-chloro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6- ((1-methyl-3-((R)-morpholin-2-ylmethoxy)-2-oxo-1,2-dihydroqu inolin-6- yl)amino)nicotinonitrile (71) [00561] 3-Hydroxy-1-methyl-6-nitroquinolin-2(1H)-one [00562] To a solution of 1-methyl-5-nitroindoline-2,3-dione (25 g, 121.27 mmol) and TEA (24.54 g, 242.54 mmol, 33.76 mL) in EtOH (750 mL) was added diazomethyl(trimethyl)silane (2 M, 72.76 mL) dropwise under N2. The mixture was stirred at 20°C for 12 hr. The mixture was concentrated under reduced pressure and 1N HCl aq (300 mL) was added. Then the mixture was stirred at 20°C for 2 hr, filtered and washed with DMF/ethyl acetate (10/1, 150 mL), the filter cake was dried under reduced pressure to give the title compound as a brown solid (9.2 g, 35.18 mmol, 15% yield, 84% purity). 1 H NMR (400 MHz, DMSO-d6) δ 10.08 (s, 1H), 8.55 (d, J = 2.69 Hz, 1H), 8.19 (dd, J = 9.29, 2.69 Hz, 1H), 7.65 (d, J = 9.41 Hz, 1H), 7.34 (s, 1H), 3.74 (s, 3H). [00563] tert-Butyl 2-(((1-methyl-6-nitro-2-oxo-1,2-dihydroquinolin-3- yl)oxy)methyl)morpholine-4-carboxylate [00564] To a solution of 3-hydroxy-1-methyl-6-nitroquinolin-2(1H)-one (1 g, 4.54 mmol) and tert-butyl 2-(bromomethyl)morpholine-4-carboxylate (1.53 g, 5.45 mmol) in DMSO (20 mL) was added DBU (829.70 mg, 5.45 mmol, 821.49 µL) under N2. The mixture was stirred at 100°C for 3 hr. The mixture (combined with another batch of 200 mg scale) was cooled to 20°C and water (~30 mL) was added, forming a precipitate which was filtered and the filter cake was washed with EtOAc (20 mL) and concentrated in vacuo to give the title compound as a yellow solid (1.2 g, 2.00 mmol, 44% yield, 70% purity). LCMS: [M-100] + = 320.1. [00565] tert-Butyl 2-(((6-amino-1-methyl-2-oxo-1,2-dihydroquinolin-3- yl)oxy)methyl)morpholine-4-carboxylate [00566] To a mixture of Pd/C (0.1 g, 10% purity) in THF (20 mL) was added tert-butyl 2-(((1- methyl-6-nitro-2-oxo-1,2-dihydroquinolin-3-yl)oxy)methyl)mor pholine-4-carboxylate (0.6 g, 1.43 mmol) under Ar. The flask was degassed under vacuum and purged with H2 several times. The mixture was stirred under H2 (15 psi) at 20°C for 12 hours. The mixture was filtered and the filtrate was concentrated in vacuo to give the title compound as a yellow solid (600 mg, 1.39 mmol, 97% yield, 90% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 7.17 (d, J = 8.82 Hz, 1H), 7.05 (s, 1H), 6.77 (dd, J = 8.88, 2.56 Hz, 1H), 6.71 (d, J = 2.50 Hz, 1H), 5.03 (s, 2H), 4.00 (d, J = 5.01 Hz, 2H), 3.94 (d, J = 13.35 Hz, 1H), 3.86 (d, J = 10.25 Hz, 1H), 3.69 - 3.77 (m, 2H), 3.56 (s, 3H), 3.46 (td, J = 11.56, 2.62 Hz, 1H), 2.89 (d, J = 3.22 Hz, 2H), 1.41 (s, 9H). [00567] tert-Butyl 2-(((6-((3,6-dichloro-5-cyanopyridin-2-yl)amino)-1-methyl-2- oxo-1,2- dihydroquinolin-3-yl)oxy)methyl)morpholine-4-carboxylate [00568] A flask with mixture of tert-butyl 2-(((6-amino-1-methyl-2-oxo-1,2-dihydroquinolin-3- yl)oxy)methyl)morpholine-4-carboxylate (1 g, 2.57 mmol), 2,5,6-trichloronicotinonitrile (532.67 mg, 2.57 mmol) and DIEA (663.73 mg, 5.14 mmol, 894.52 µL) in DMF (20 mL) was degassed and purged with N 2 for 3 times, and then the mixture was stirred at 100°C for 12 hr under N 2 atmosphere. The mixture was cooled to 20°C and water (20 mL) was added, forming a precipitate which was filtered and the filter cake was dried in vacuo to give the title compound as a yellow solid (1 g, 1.48 mmol, 58% yield, 83% purity). LCMS: [M+H] + = 560.2. [00569] tert-Butyl 2-(((6-((3-chloro-5-cyano-6-((3S,4S,5R)-4-fluoro-3,5-dimethy lpiperidin-1- yl)pyridin-2-yl)amino)-1-methyl-2-oxo-1,2-dihydroquinolin-3- yl)oxy)methyl)morpholine-4- carboxylate [00570] To a solution of tert-butyl 2-(((6-((3,6-dichloro-5-cyanopyridin-2-yl)amino)-1-methyl- 2-oxo-1,2-dihydroquinolin-3-yl)oxy)methyl)morpholine-4-carbo xylate (200 mg, 356.87 µmol) and (3S,4S,5R)-4-fluoro-3,5-dimethylpiperidine hydrochloride (119.66 mg, 713.74 µmol, HCl) in DMSO (4 mL) was added DIEA (230.61 mg, 1.78 mmol, 310.80 µL). The mixture was stirred at 100°C for 12 hr. The mixture (combined with another batch of 100 mg scale) was cooled to 20°C and water (10 mL) was added, forming a precipitate which was filtered and the filter cake was concentrated in vacuo to give the title compound as a white solid (300 mg, 70% purity). LCMS: [M+H] + = 655.3. [00571] 5-Chloro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((1-methyl-3- (morpholin-2-ylmethoxy)-2-oxo-1,2-dihydroquinolin-6-yl)amino )nicotinonitrile [00572] A mixture of tert-butyl 2-(((6-((3-chloro-5-cyano-6-((3S,4S,5R)-4-fluoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-1-methyl-2-oxo-1, 2-dihydroquinolin-3- yl)oxy)methyl)morpholine-4-carboxylate (250 mg, 381.59 µmol) and HCl/EtOAc (4 M, 10.00 mL) (4 M HCl in EtOAc) was stirred at 20°C for 1 hr under N2 atmosphere. The mixture was concentrated in vacuo without further work-up. The residue was purified by prep-HPLC (column: Phenomenex Luna C18 80*40mm*3 µm; mobile phase: [water(HCl)-ACN]; B%: 30%-60%, 7min) to give the title compound as a yellow solid (110 mg, 184.11 µmol, 48% yield, 99% purity, HCl). 1 H NMR (400 MHz, DMSO-d6) δ 9.27 - 9.41 (m, 2H), 9.09 (s, 1H), 7.96 (s, 1H), 7.86 (d, J = 2.32 Hz, 1H), 7.63 (dd, J = 9.05, 2.45 Hz, 1H), 7.47 (d, J = 9.05 Hz, 1H), 7.25 (s, 1H), 4.11 - 4.20 (m, 2H), 4.08 (d, J = 4.65 Hz, 2H), 3.96 - 4.05 (m, 3H), 3.78 - 3.88 (m, 2H), 3.67 (s, 3H), 2.94 - 3.04 (m, 2H), 2.79 (t, J = 12.59 Hz, 2H), 1.77 - 1.94 (m, 2H), 0.86 (d, J = 6.85 Hz, 6H). [00573] 5-Chloro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((1-methyl-3-((S)- morpholin-2-ylmethoxy)-2-oxo-1,2-dihydroquinolin-6-yl)amino) nicotinonitrile (70) [00574] Racemic 5-chloro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((1-methyl-3- (morpholin-2-ylmethoxy)-2-oxo-1,2-dihydroquinolin-6-yl)amino )nicotinonitrile (110 mg, 185.97 µmol, HCl) was separated with SFC (column: REGIS(S,S)WHELK-O1(250mm*25mm,10µm); mobile phase: [0.1%NH 3 H 2 O MeOH]; B%: 60%-60%, 40min) to give the title compound as a yellow solid (40 mg, 71.92 µmol, 39% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.04 (s, 1H), 7.93 - 7.95 (m, 1H), 7.88 (d, J = 2.32 Hz, 1H), 7.59 (dd, J = 9.05, 2.32 Hz, 1H), 7.43 (d, J = 9.05 Hz, 1H), 7.20 (s, 1H), 4.41 - 4.59 (m, 1H), 3.85 - 4.04 (m, 5H), 3.74 (s, 2H), 3.65 (s, 3H), 3.48 (td, J = 10.64, 3.42 Hz, 1H), 2.89 (dd, J = 12.17, 1.41 Hz, 1H), 2.78 (t, J = 12.65 Hz, 2H), 2.64 - 2.72 (m, 3H), 1.76 - 1.96 (m, 2H), 0.86 (d, J = 6.97 Hz, 6H). [00575] 5-Chloro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((1-methyl-3-((R)- morpholin-2-ylmethoxy)-2-oxo-1,2-dihydroquinolin-6-yl)amino) nicotinonitrile (71) [00576] Racemic 5-chloro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((1-methyl-3- (morpholin-2-ylmethoxy)-2-oxo-1,2-dihydroquinolin-6-yl)amino )nicotinonitrile (110 mg, 185.97 µmol, HCl) was separated with SFC (column: REGIS(S,S)WHELK-O1(250mm*25mm,10µm); mobile phase: [0.1%NH3H2O MEOH]; B%: 60%-60%, 40min) to give the title compound as a yellow solid (25 mg, 44.56 µmol, 24% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.05 (s, 1H), 7.94 (s, 1H), 7.87 (d, J = 2.20 Hz, 1H), 7.58 (dd, J = 8.99, 2.26 Hz, 1H), 7.43 (d, J = 9.05 Hz, 1H), 7.20 (s, 1H), 4.42 - 4.59 (m, 1H), 3.87 - 4.03 (m, 5H), 3.75 (d, J = 10.51 Hz, 2H), 3.65 (s, 3H), 3.48 (td, J = 10.64, 3.30 Hz, 1H), 2.89 (d, J = 10.76 Hz, 1H), 2.78 (t, J = 12.65 Hz, 2H), 2.61 - 2.72 (m, 2H), 1.76 - 1.93 (m, 2H), 0.86 (d, J = 6.85 Hz, 6H). [00577] Example 33: Synthesis of 2-((6-((3-chloro-5-cyano-6-((3S,4S,5R)-4-fluoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-1-(2-(dimethylami no)ethyl)-2-oxo-1,2- dihydroquinolin-3-yl)oxy)-N-methylacetamide (72) [00578] 2-((6-((3,6-Dichloro-5-cyanopyridin-2-yl)amino)-2-oxo-1,2-di hydroquinolin-3- yl)oxy)-N-methylacetamide [00579] To a solution of methyl 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-2-oxo-1H- quinolin-3-yl]oxy]acetate (3 g, 7.16 mmol) in NMP (3 mL) and EtOH (27 mL) was added MeNH2 (4.44 g, 57.25 mmol, 40% purity). The mixture was stirred at 70°C for 12 hr. The reaction mixture was cooled to 20°C and EtOH (90 mL) was added and the suspension was filtered. The filter cake was dried under reduced pressure to give the title compound as a yellow solid (2.6 g, 5.41 mmol, 76% yield, 87% purity). [00580] 2-((6-((3-Chloro-5-cyano-6-((3S,4S,5R)-4-fluoro-3,5-dimethyl piperidin-1-yl)pyridin- 2-yl)amino)-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-methylacet amide [00581] To a solution of 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-2-oxo-1H-quino lin-3- yl]oxy]-N-methyl-acetamide (500 mg, 1.20 mmol) and (3S,4S,5R)-4-fluoro-3,5-dimethyl- piperidine (300.64 mg, 1.79 mmol, HCl) in DMSO (1 mL) was added DIEA (618.04 mg, 4.78 mmol, 832.94 µL). The mixture was stirred at 100°C for 2 hr, then cooled to room temperature and treated with water (1 mL), forming a precipitate which was filtered. The filter cake was washed with EtOAc (2 mL) and then dried under reduce pressure to give the title compound as a brown solid (600 mg, 818.77 µmol, 68% yield, 70% purity). [00582] 2-((6-((3-Chloro-5-cyano-6-((3S,4S,5R)-4-fluoro-3,5-dimethyl piperidin-1-yl)pyridin- 2-yl)amino)-1-(2-(dimethylamino)ethyl)-2-oxo-1,2-dihydroquin olin-3-yl)oxy)-N-methylacetamide (72) [00583] To a solution of 2-[[6-[[3-chloro-5-cyano-6-[(3S,4S,5R)-4-fluoro-3,5-dimethyl -1- piperidyl]-2-pyridyl]amino]-2-oxo-1H-quinolin-3-yl]oxy]-N-me thyl-acetamide (100 mg, 194.95 µmol) and 2-chloro-N,N-dimethyl-ethanamine (42.12 mg, 292.42 µmol, HCl) in DMSO (1 mL) was added KI (16.18 mg, 97.47 µmol), Cs2CO3 (190.55 mg, 584.84 µmol). The mixture was stirred at 60°C and then was heated to 80°C for 2 hr. The reaction mixture was treated with water (3 mL), forming a precipitate which was filtered and the filter cake was washed with EtOAc (6 mL). The filter cake was collected and dried in vacuo to give the title compound as an orange solid (2.6 mg, 4.23 µmol, 2% yield, 95% purity). 1 H NMR (400 MHz, MeOD-d4) δ 8.02 (d, J = 2.38 Hz, 1H), 7.76 - 7.80 (m, 1H), 7.75 (s, 1H), 7.58 (d, J = 9.18 Hz, 1H), 7.39 - 7.43 (m, 1H), 4.83 - 4.84 (m, 2H), 4.61 (s, 2H), 4.41 - 4.58 (m, 1H), 4.11 (dd, J = 12.87, 3.93 Hz, 2H), 3.61 (t, J = 6.02 Hz, 2H), 3.09 (s, 6H), 2.85 - 2.93 (m, 5H), 1.80 - 2.00 (m, 2H), 0.98 (d, J = 6.91 Hz, 6H). [00584] Example 34: Synthesis of 2-((6-((3-chloro-5-cyano-6-((3S,4S,5R)-4-hydroxy-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-1-(2-(dimethylami no)ethyl)-2-oxo-1,2- dihydroquinolin-3-yl)oxy)-N-methylacetamide (73) [00585] 2-((6-((3-Chloro-5-cyano-6-((3S,4S,5R)-4-hydroxy-3,5-dimethy lpiperidin-1- yl)pyridin-2-yl)amino)-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N -methylacetamide [00586] To a solution of 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-2-oxo-1H-quino lin-3- yl]oxy]-N-methyl-acetamide (300 mg, 717.30 µmol) and (3R,5S)-3,5-dimethylpiperidin-4-ol (178.24 mg, 1.08 mmol, HCl) in DMSO (1 mL) was added DIPEA (370.82 mg, 2.87 mmol, 499.75 µL). The mixture was stirred at 100°C for 12 hr. Then water (5 mL) was added, forming a precipitate which was filtered and the filter cake was washed with water (10 mL) and EtOAc (20 mL), then the filter cake was dried in vacuo to give the title compound as a brown solid (250 mg, 457.95 µmol, 64% yield, 94% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 12.04 (s, 1H), 8.99 (s, 1H), 7.99 (m, 1H), 7.92 (s, 1H), 7.76 (d, J = 2 Hz, 1H), 7.61 (dd, J = 8.8, 2.4 Hz, 1H), 7.30 (d, J = 8.8 Hz, 1H), 7.25 (s, 1H), 4.61 - 4.58 (m, 3H), 3.92 (dd, J = 13.2, 3.2 Hz, 2H), 3.49 (d, J = 4.4 Hz, 1H), 2.91 – 2.83 (m, 2H), 2.74 (d, J = 4.8 Hz, 3H), 1.72 - 1.69 (m, 2H), 0.84 (d, J = 6.8 Hz, 6H). [00587] 2-((6-((3-chloro-5-cyano-6-((3S,4S,5R)-4-hydroxy-3,5-dimethy lpiperidin-1-yl)pyridin- 2-yl)amino)-1-(2-(dimethylamino)ethyl)-2-oxo-1,2-dihydroquin olin-3-yl)oxy)-N-methylacetamide (73) [00588] To a solution of 2-[[6-[[3-chloro-5-cyano-6-[(3R,5S)-4-hydroxy-3,5-dimethyl-1 - piperidyl]-2-pyridyl]amino]-2-oxo-1H-quinolin-3-yl]oxy]-N-me thyl-acetamide (150 mg, 293.56 µmol) and 2-chloro-N,N-dimethyl-ethanamine (63.43 mg, 440.34 µmol, HCl) in DMSO (3 mL) was added Cs 2 CO 3 (286.94 mg, 880.68 µmol) and KI (24.37 mg, 146.78 µmol). The mixture was stirred at 60°C for 2 hr. Water (2 mL) was added to the mixture (combined with another batch of 70 mg scale) and filtered. The filter cake was dried under vacuum to give a residue which was purified by prep-HPLC (column: Waters Xbridge BEH C18 100*30mm*10µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 35%-65%, 8min) to give the title compound as a white solid (96% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.00 (br s, 1H), 7.96 (br d, J = 4.41 Hz, 1H), 7.88 (s, 1H), 7.77 (d, J = 2.15 Hz, 1H), 7.69 (dd, J = 9.06, 2.15 Hz, 1H), 7.45 (d, J = 9.18 Hz, 1H), 7.19 (s, 1H), 4.52 (s, 3H), 4.39 (br t, J = 7.09 Hz, 2H), 3.87 (br dd, J = 12.64, 3.10 Hz, 2H), 3.43 (br s, 1H), 3.21 - 3.29 (m, 2H), 2.83 (br t, J = 12.46 Hz, 2H), 2.67 (d, J = 4.53 Hz, 3H), 2.23 (s, 6H), 1.59 - 1.73 (m, 2H), 0.79 (d, J = 6.79 Hz, 6H). [00589] Example 35: Synthesis of 5-chloro-2-((3S,5R)-4,4-difluoro-3-hydroxy-5- methylpiperidin-1-yl)-6-((3-(3-hydroxy-3-methylbutyl)-1-meth yl-2-oxo-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile (74) and 5-chloro-2-((3R,5S)-4,4-difluoro-3- hydroxy-5-methylpiperidin-1-yl)-6-((3-(3-hydroxy-3-methylbut yl)-1-methyl-2-oxo-2,3-dihydro- 1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile (75)
[00590] tert-Butyl 3-hydroxy-4,4-dimethoxy-5-methylpiperidine-1-carboxylate [00591] To a solution of KOH (133.48 g, 2.38 mol) in MeOH (590 mL) was added tert-butyl 3- methyl-4-oxo-piperidine-1-carboxylate (118 g, 553.28 mmol) portion-wise at 0°C, then the mixture was stirred at 0°C for 20 min. Then [phenyl-(2,2,2-trifluoroacetyl)oxy-λ3-iodanyl] 2,2,2- trifluoroacetate (356.90 g, 829.92 mmol, 1.5 eq) was added portion-wise at 0°C. The resulting mixture was stirred at 20°C for 12 hr. The mixture (combined with other 4 batches of same scale) was concentrated in vacuo. Then water (2 L) was added and extracted with ethyl acetate (1 L x3). The combined organic phase was washed with brine (2 L), dried with anhydrous Na2SO4, filtered and concentrated in vacuo. The residue was purified by flash silica gel column chromatography (Silica Flash Column, Eluent of 0~50% Ethyl acetate/Petroleum ether gradient) to give the title compound as a yellow oil (750 g). 1 H NMR (400 MHz, CDCl 3 ) δ 4.04 - 4.29 (m, 1H), 3.72 - 3.93 (m, 2H), 3.26 (s, 3H), 3.21 (s, 3H), 2.93 - 3.13 (m, 2H), 1.95 - 2.10 (m, 2H), 1.44 - 1.47 (m, 9H), 1.13 (d, J = 7.34 Hz, 3H). [00592] tert-Butyl 3-(benzyloxy)-4,4-dimethoxy-5-methylpiperidine-1-carboxylate [00593] To a solution of NaH (29.85 g, 746.23 mmol, 60% purity) in THF (1 L) was added tert- butyl 3-hydroxy-4,4-dimethoxy-piperidine-1-carboxylate (150 g, 574.02 mmol) in THF (500 mL) dropwise at 0°C. After addition, the mixture was stirred at 0°C for 30 min, then bromomethylbenzene (108.00 g, 631.42 mmol, 75.00 mL) was added dropwise at 0°C. The resulting mixture was stirred at 20°C for 11.5 hr (4 batches). The reaction mixture (combined with other 3 batches of same scale) was quenched with sat. NH 4 Cl (1 L). The mixture was concentrated and extracted with ethyl acetate (500 mL x3). The combined organic phase was dried with anhydrous Na2SO4, filtered and concentrated under reduced pressure. The residue was purified by flash silica gel column chromatography (Silica Flash Column, Eluent of 0~50% Ethyl acetate/Petroleum ether gradient) to give the title compound as a yellow oil (80 g). 1 H NMR (400 MHz, CDCl3) δ 7.20 - 7.44 (m, 5H), 4.74 - 4.89 (m, 1H), 4.26 - 4.60 (m, 2H), 3.71 - 4.01 (m, 1H), 3.43 - 3.57 (m, 1H), 3.14 - 3.25 (m, 6H), 2.86 - 3.12 (m, 2H), 1.98 - 2.16 (m, 1H), 1.36 - 1.51 (m, 9H), 1.15 (br dd, J = 12.04, 7.27 Hz, 3H). [00594] 3-(Benzyloxy)-5-methylpiperidin-4-one [00595] A mixture of tert-butyl 3-benzyloxy-4,4-dimethoxy-5-methyl-piperidine-1-carboxylate (84.5 g, 231.21 mmol) in H 2 O (300 mL) and TFA (600 mL) was stirred at 20°C for 2 hours. The reaction mixture was concentrated under reduced pressure to give the title compound as a yellow oil (75 g, 225.02 mmol, 97% yield, TFA). LCMS: [M+H] + = 220.2. [00596] (3R,5S)-3-(Benzyloxy)-5-methylpiperidin-4-one [00597] 3-Benzyloxy-5-methyl-piperidin-4-one (60.00 g, 180.02 mmol, TFA salt) was mixed with sat. aq. NaHCO3 (500 mL) and extracted with EtOAc (300 mL x2). The combined organic phase was washed with brine (500 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The residue was purified by flash silica gel column chromatography (Silica Flash Column, Eluent of 30~100% Ethyl acetate/Petroleum ether gradient) to give 40 g of a mixture of products with two close spots on TLC. The 40 g of the mixture product was purified by prep- HPLC (column: Waters Xbridge BEH C18 100*30mm*10µm; mobile phase: [water(NH 3 H 2 O+NH 4 HCO 3 )-ACN]; B%: 15%-50%, 8min) to give the title compound as a colorless oil (16 g, 66.40 mmol, 37% yield, 91% purity). 1 H NMR (400 MHz, CDCl3) δ 7.28 - 7.43 (m, 5H), 4.88 (d, J = 11.92 Hz, 1H), 4.51 (d, J = 11.80 Hz, 1H), 3.95 (dd, J = 10.67, 6.74 Hz, 1H), 3.56 (ddd, J = 12.28, 6.79, 2.03 Hz, 1H), 3.25 - 3.38 (m, 1H), 2.79 (dd, J = 12.10, 10.91 Hz, 1H), 2.43 - 2.55 (m, 2H), 0.99 - 1.11 (m, 3H). [00598] (3R,5S)-Benzyl 3-(benzyloxy)-5-methyl-4-oxopiperidine-1-carboxylate [00599] To a mixture of (3R,5S)-3-benzyloxy-5-methyl-piperidin-4-one (10.00 g, 45.60 mmol) in DCM (100 mL) was added DIEA (17.68 g, 136.81 mmol, 23.83 mL) in one portion under N2. Then CbzCl (8.56 g, 50.16 mmol, 7.13 mL) was added dropwise at 0°C under N2. The mixture was stirred at 15°C for 3 hours. The mixture was washed with 10% citric acid (100 mL) and extracted with ethyl acetate (120 mL x2). The combined organic phase was washed with brine (200 mL), dried with anhydrous Na2SO4, filtered and concentrated in vacuo. The residue was purified by flash silica gel column chromatography (ISCO®; 40 g SepaFlash® Silica Flash Column, Eluent of 0~10% Ethyl acetate/Petroleum ether gradient @ 100 mL/min) to give the title compound as a yellow oil (10.5 g, 27.80 mmol, 61% yield, 94% purity). 1 H NMR (400 MHz, CDCl3) δ 7.28 - 7.47 (m, 10H), 5.18 (br s, 2H), 4.87 (d, J = 11.63 Hz, 1H), 4.28 - 4.81 (m, 3H), 3.97 (br s, 1H), 3.00 (br s, 1H), 2.47 - 2.82 (m, 2H), 1.08 (d, J = 6.38 Hz, 3H). [00600] (3R,5S)-Benzyl 3-(benzyloxy)-4,4-difluoro-5-methylpiperidine-1-carboxylate [00601] To a solution of benzyl (3R,5S)-3-benzyloxy-5-methyl-4-oxo-piperidine-1-carboxylate (3 g, 8.49 mmol) in DCM (40 mL) was added DAST (2.74 g, 16.98 mmol, 2.24 mL) at -70°C. The mixture was stirred at 15°C for 12 hr. Then the mixture was quenched with sat. NaHCO 3 (~60 mL) to pH=8 and the mixture was extracted with DCM (40 mL x2). The combined organic phase was washed with brine (100 mL), dried over anhydrous Na2SO4, filtered and concentrated in vacuo. The residue was purified by flash silica gel column chromatography (Silica Flash Column, Eluent of 0~30% Ethyl acetate/Petroleum ether gradient @ 100 mL/min) to give the title compound as a colorless oil (2 g, 5.33 mmol, 63% yield). 1 H NMR (400 MHz, CDCl3) δ 7.27 - 7.46 (m, 10H), 5.11 (br s, 2H), 4.59 - 4.89 (m, 2H), 3.84 - 4.39 (m, 2H), 3.54 (br s, 1H), 3.07 (br t, J = 11.44 Hz, 1H), 2.83 (br d, J = 7.51 Hz, 1H), 1.90 - 2.07 (m, 1H), 1.09 (br d, J = 6.68 Hz, 3H). [00602] (3R,5S)-tert-Butyl 4,4-difluoro-3-hydroxy-5-methylpiperidine-1-carboxylate [00603] To a solution of benzyl (3R,5S)-3-benzyloxy-4,4-difluoro-5-methyl-piperidine-1- carboxylate (1 g, 2.66 mmol) in t-BuOH (5 mL) was added Pd/C (0.3 g, 10% purity) and Boc 2 O (1.16 g, 5.33 mmol, 1.22 mL) under Ar. The suspension was degassed under vacuum and purged with H2 several times. The mixture was stirred under H2 (15 psi) at 60°C for 12 hours. The mixture was filtered through Celite® and the filtrate was concentrated in vacuo to give the title compound as a colorless oil (1.5 g, crude). 1 H NMR (400 MHz, MeOD-d 4 ) δ 4.04 - 4.17 (m, 1H), 3.94 (br d, J = 10.01 Hz, 1H), 3.61 - 3.75 (m, 1H), 2.57 - 2.95 (m, 2H), 1.89 - 2.10 (m, 1H), 1.47 (s, 9H), 1.04 (d, J = 6.88 Hz, 3H). [00604] (3R,5S)-4,4-Difluoro-5-methylpiperidin-3-ol hydrochloride [00605] A solution of tert-butyl (3R,5S)-4,4-difluoro-3-hydroxy-5-methyl-piperidine-1- carboxylate (1.5 g, 5.97 mmol) in 4N HCl/EtOAc (20 mL) was stirred at 15°C for 1 hours. The mixture was concentrated in vacuo to give the title compound as a white solid (1.1 g, 5.86 mmol, 98% yield, HCl). 1 H NMR (400 MHz, MeOD-d 4 ) δ 4.03 - 4.18 (m, 1H), 3.47 (br d, J = 12.38 Hz, 1H), 3.39 (br d, J = 12.63 Hz, 1H), 3.04 (br t, J = 11.63 Hz, 1H), 2.94 (br t, J = 12.26 Hz, 1H), 2.30 - 2.52 (m, 1H), 1.15 (d, J = 6.75 Hz, 3H). [00606] 5-Chloro-2-(4,4-difluoro-3-hydroxy-5-methylpiperidin-1-yl)-6 -((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino) nicotinonitrile [00607] To a solution of 2,5-dichloro-6-[[3-(3-hydroxy-3-methyl-butyl)-1-methyl-2-oxo - benzimidazol-5-yl]amino]pyridine-3-carbonitrile (100 mg, 237.93 µmol) 4,4-difluoro-5-methyl- piperidin-3-ol (66.96 mg, 356.89 µmol, HCl) in DMSO (1 mL) was added DIPEA (123.00 mg, 951.72 µmol, 165.77 µL) .The mixture was stirred at 100°C for 12 hr. The mixture was cooled to 15°C and purified directly with prep-HPLC (column: Waters Xbridge Prep OBD C18 150*40mm*10µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 25%-55%, 8min) to give the title compound as a white solid (50 mg, 91.22 µmol, 38% yield, 98% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.01 (s, 1H), 7.95 (s, 1H), 7.29 (s, 1H), 7.22 (br d, J = 8.13 Hz, 1H), 7.11 (br d, J = 8.25 Hz, 1H), 5.72 (br d, J = 5.50 Hz, 1H), 4.46 (s, 1H), 4.23 (br d, J = 12.26 Hz, 1H), 3.96 (br d, J = 12.38 Hz, 1H), 3.83 - 3.91 (m, 2H), 3.57 - 3.73 (m, 1H), 3.32 (br s, 3H), 2.93 (br t, J = 11.94 Hz, 1H), 2.71 (br t, J = 12.63 Hz, 1H), 1.93 - 2.14 (m, 1H), 1.63 - 1.75 (m, 2H), 1.16 (s, 6H), 0.79 (br d, J = 6.50 Hz, 3H). [00608] 5-chloro-2-((3S,5R)-4,4-difluoro-3-hydroxy-5-methylpiperidin -1-yl)-6-((3-(3-hydroxy- 3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazo l-5-yl)amino) nicotinonitrile (74) and 5-chloro-2-((3R,5S)-4,4-difluoro-3-hydroxy-5-methylpiperidin -1-yl)-6-((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino) nicotinonitrile (75) [00609] Racemic 5-chloro-2-(4,4-difluoro-3-hydroxy-5-methyl-1-piperidyl)-6-[ [3-(3-hydroxy- 3-methyl-butyl)-1-methyl-2-oxo-benzimidazol-5-yl]amino]pyrid ine-3-carbonitrile (60 mg, 112.15 µmol) was separated with SFC (column: DAICEL CHIRALPAK IG (250mm*30mm,10µm); mobile phase: [0.1%NH 3 H 2 O IPA]; B%: 40%-40%, 20min) to give 5- chloro-2-((3S,5R)-4,4-difluoro-3-hydroxy-5-methylpiperidin-1 -yl)-6-((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl) amino)nicotinonitrile as a white solid (18 mg, 99% purity, 100% ee); 1 H NMR (400 MHz, MeCN-d 3 ) δ 7.72 (s, 2H), 7.34 (d, J = 1.88 Hz, 1H), 7.16 (dd, J = 8.38, 1.88 Hz, 1H), 7.02 (d, J = 8.38 Hz, 1H), 4.27 - 4.36 (m, 1H), 4.04 - 4.12 (m, 1H), 3.91 - 3.98 (m, 2H), 3.70 - 3.88 (m, 2H), 3.34 (s, 3H), 2.94 - 3.03 (m, 1H), 2.80 - 2.92 (m, 2H), 2.02 - 2.12 (m, 1H), 1.77 - 1.83 (m, 2H), 1.22 (s, 6H), 0.93 (d, J = 6.75 Hz, 3H); and 5-chloro-2-((3R,5S)-4,4-difluoro-3-hydroxy-5-methylpiperidin -1-yl)-6-((3-(3-hydroxy- 3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazo l-5-yl)amino)nicotinonitrile as a white solid (17 mg, 99% purity, 99% ee) as white solid; 1 H NMR (400 MHz, MeCN-d3) δ 7.72 (s, 2H), 7.34 (d, J = 1.75 Hz, 1H), 7.16 (dd, J = 8.32, 1.94 Hz, 1H), 7.02 (d, J = 8.38 Hz, 1H), 4.24 - 4.37 (m, 1H), 4.03 - 4.12 (m, 1H), 3.95 (dd, J = 8.82, 7.19 Hz, 2H), 3.70 - 3.88 (m, 2H), 3.34 (s, 3H), 2.94 - 3.03 (m, 1H), 2.90 (s, 1H), 2.80 - 2.89 (m, 1H), 2.01 - 2.12 (m, 1H), 1.77 - 1.84 (m, 2H), 1.22 (s, 6H), 0.93 (d, J = 6.88 Hz, 3H). [00610] The absolute configurations of compounds 74 & 75 were randomly assigned based on the hydroxyl group and methyl group being in cis-conformation. [00611] Example 36: Synthesis of 2-((6-((3-chloro-5-cyano-6-(3-hydroxy-5-methylpiperidin-1- yl)pyridin-2-yl)amino)-1-(2-(dimethylamino)ethyl)-2-oxo-1,2- dihydroquinolin-3-yl)oxy)-N- methylacetamide (76) [00612] 2-((6-((3-Chloro-5-cyano-6-(3-hydroxy-5-methylpiperidin-1-yl )pyridin-2-yl)amino)-2- oxo-1,2-dihydroquinolin-3-yl)oxy)-N-methylacetamide [00613] To a solution of 5-methylpiperidin-3-ol (315.40 mg, 1.80 mmol, HOAc) and 2-[[6-[(3,6- dichloro-5-cyano-2-pyridyl)amino]-2-oxo-1H-quinolin-3-yl]oxy ]-N-methyl-acetamide (500 mg, 1.20 mmol) in DMSO (5 mL) was added DIEA (620.35 mg, 4.80 mmol, 836.05 µL). The mixture was stirred at 100°C for 1 hr. The reaction mixture was treated with water (20 mL), forming a precipitate which was filtered and the filter cake was washed with EtOAc (30 mL). The filter cake was collected and dried under reduced pressure to give the title compound as a yellow solid (600 mg, 567.47 µmol, 47% yield, 47% purity). LCMS: [M+H] + = 497.1. [00614] 2-((6-((3-Chloro-5-cyano-6-(3-hydroxy-5-methylpiperidin-1-yl )pyridin-2-yl)amino)-1- (2-(dimethylamino)ethyl)-2-oxo-1,2-dihydroquinolin-3-yl)oxy) -N-methylacetamide (76) [00615] To a solution of 2-[[6-[[3-chloro-5-cyano-6-(3-hydroxy-5-methyl-1-piperidyl)- 2- pyridyl]amino]-2-oxo-1H-quinolin-3-yl]oxy]-N-methyl-acetamid e (500 mg, 1.01 mmol) and 2- chloro-N,N-dimethyl-ethanamine (217.39 mg, 1.51 mmol, HCl) in DMSO (5 mL) was added Cs2CO3 (983.47 mg, 3.02 mmol) and KI (83.51 mg, 503.07 µmol). The mixture was stirred at 60°C for 2 hr. The reaction mixture was treated with water (30 mL), forming a precipitate which was filtered and the filter cake was washed with EtOAc (30 mL). The filter cake was collected and dried under reduced pressure to give a residue which was purified by prep-HPLC (column: Phenomenex Luna 80*30mm*3µm; mobile phase: [water(HCl)-ACN]; B%: 15%-35%, 8min) to give the title compound as a yellow solid (8 mg, 12.53 µmol, 1% yield, 95% purity, HCl). 1 H NMR (400 MHz, DMSO-d6) δ 10.07 (br s, 1H), 9.03 (s, 1H), 8.04 (d, J = 2.03 Hz, 1H), 7.92 - 7.99 (m, 2H), 7.67 - 7.71 (m, 1H), 7.61 - 7.65 (m, 1H), 7.32 (s, 1H), 4.66 (br t, J = 6.44 Hz, 2H), 4.54 (s, 2H), 4.33 (br dd, J = 12.10, 3.99 Hz, 1H), 4.12 (br d, J = 12.76 Hz, 1H), 3.51 (br dd, J = 10.55, 4.47 Hz, 2H), 2.91 (d, J = 4.65 Hz, 6H), 2.68 (d, J = 4.65 Hz, 3H), 2.57 (br d, J = 12.28 Hz, 1H), 2.54 (s, 1H), 2.41 - 2.45 (m, 1H), 1.98 (br d, J = 12.04 Hz, 1H), 1.59 - 1.72 (m, 1H), 1.00 (q, J = 11.88 Hz, 1H), 0.82 (d, J = 6.56 Hz, 3H). [00616] Example 37: Synthesis of 2-((6-((3-chloro-5-cyano-6-((3R,4R,5S)-4-fluoro-3,5- dimethylpiperidin-1-yl)pyridin-2-yl)amino)-1-(2-(dimethylami no)ethyl)-2-oxo-1,2- dihydroquinolin-3-yl)oxy)-N-methylacetamide (77) [00617] (3R,4S,5S)-1-Benzyl-3,5-dimethylpiperidin-4-ol [00618] To a solution of (3R,5S)-1-benzyl-3,5-dimethylpiperidin-4-one (4 g, 18.41 mmol) in MeOH (45 mL) was added NaBH 4 (835.67 mg, 22.09 mmol) at 0°C for 10 min. The mixture was stirred at 20°C for 12 hr. The reaction mixture was quenched by adding 1N HCl (40 mL) at 20°C, then the mixture was concentrated under reduced pressure. The residue was dissolved in ethyl acetate (40 mL) and washed with water (40 mL x3), the combined organic phase was dried with anhydrous Na2SO4, filtered and concentrated under reduced pressure. The residue was purified by flash silica gel column chromatography (Silica Flash Column, Eluent of 0~20% Ethyl acetate/Petroleum) to give the title compound as a white solid (1 g, 3.65 mmol, 20% yield, 80% purity). LCMS: [M+H] + = 220.2. [00619] (3R,4R,5S)-1-Benzyl-4-fluoro-3,5-dimethylpiperidine [00620] To a solution of (3R,4S,5S)-1-benzyl-3,5-dimethylpiperidin-4-ol (650 mg, 2.96 mmol) in DCM (7 mL) was added DAST (955.43 mg, 5.93 mmol, 783.14 µL) at -55 °C under N2. The mixture was stirred at 20°C for 12 hr. The mixture was added sat. NaHCO3 (30 mL), then the mixture was extracted with DCM (3 x 20 mL). The combined organic phase was dried with anhydrous Na 2 SO 4 , filtered and concentrated in vacuo. The residue was purified by silica gel column chromatography (silica gel, Petroleum ether/Ethyl acetate = 1/0 to 10/1) to give the title compound as a yellow oil (500 mg, 2.09 mmol, 70% yield, 92% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 7.23 - 7.35 (m, 5H), 3.59 - 3.78 (m, 1H), 3.45 (s, 2H), 2.72 - 2.80 (m, 2H), 1.75 - 1.84 (m, 2H), 1.67 - 1.74 (m, 2H), 0.90 (d, J = 6.36 Hz, 6H). [00621] (3R,4R,5S)-4-Fluoro-3,5-dimethylpiperidine [00622] To a mixture of Pd/C (0.1 g, 10% purity) in EtOH (5 mL) was added (3R,4R,5S)-1- benzyl-4-fluoro-3,5-dimethylpiperidine (500 mg, 2.26 mmol) under Ar. The flask was degassed under vacuum and purged with H2 several times. The mixture was stirred under H2 (15 psi) at 50°C for 3 hours. The mixture was filtered through a pad of Celite® and washed with EtOH (50 mL). HCl/EtOAc (4M in EtOAc, 3 mL) was added to the filtrate. After stirring at 20°C for 12 h, the mixture was concentrated in vacuo to give the title compound as a white solid (360 mg, 2.15 mmol, 95% yield, HCl). 1 H NMR (400 MHz, DMSO-d6) δ 3.91 - 4.13 (m, 1H), 3.17 - 3.29 (m, 2H), 2.60 - 2.69 (m, 2H), 1.98 - 2.14 (m, 2H), 0.97 - 1.00 (m, 6H). [00623] 2-((6-((3-Chloro-5-cyano-6-((3R,4R,5S)-4-fluoro-3,5-dimethyl piperidin-1-yl)pyridin- 2-yl)amino)-2-oxo-1,2-dihydroquinolin-3-yl)oxy)-N-methylacet amide [00624] A flask with mixture of 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-2-oxo-1H- quinolin-3-yl]oxy]-N-methyl-acetamide (200 mg, 478.20 µmol), (3R,4R,5S)-4-fluoro-3,5- dimethylpiperidine (120.26 mg, 717.30 µmol, HCl) and DIEA (432.63 mg, 3.35mmol, 583.06 µL) in DMSO (2 mL) was degassed and purged with N 2 for 3 times, and then the mixture was stirred at 100°C for 12 hr under N 2 atmosphere. Water (10 mL) was added to the mixture, forming a precipitate which was filtered. The filter cake was dry under reduced pressure and the residue was triturated with Petroleum ether/ Ethyl acetate = 3:1 (5 mL) at 15°C for 10 min to give the title compound as a grey solid (280 mg, 436.68 µmol, 91% yield, 80% purity). LCMS: [M+H] + = 513.2. [00625] 2-((6-((3-Chloro-5-cyano-6-((3R,4R,5S)-4-fluoro-3,5-dimethyl piperidin-1-yl)pyridin- 2-yl)amino)-1-(2-(dimethylamino)ethyl)-2-oxo-1,2-dihydroquin olin-3-yl)oxy)-N-methylacetamide (77) [00626] A flask with mixture of 2-[[6-[[3-chloro-5-cyano-6-[(3S,5R)-4-fluoro-3,5-dimethyl-1- piperidyl]-2-pyridyl]amino]-2-oxo-1H-quinolin-3-yl]oxy]-N-me thyl-acetamide (100 mg, 194.95 µmol), 2-chloro-N,N-dimethyl-ethanamine (30.89 mg, 214.44 µmol, HCl), Cs2CO3 (190.55 mg, 584.84 µmol) and KI (16.18 mg, 97.47 µmol) in DMSO (1 mL) was degassed and purged with N 2 for 3 times, and then the mixture was stirred at 60°C for 2 hr under N 2 atmosphere. The mixture was concentrated in vacuo without further work-up. The residue was purified by prep-HPLC (column: Phenomenex C1880*40mm*3µm; mobile phase: [water( NH4HCO3)-ACN]; B%: 25%- 60%, 8min) to give the title compound as a white solid (25 mg, 92.27% purity). 1 H NMR (400 MHz, DMSO-d6) δ 0.87 (d, J = 6.48 Hz, 6H), 1.66 - 1.78 (m, 2H), 2.24 (s, 6H), 2.66 - 2.68 (m, 5H), 3.30 (br s, 2H), 3.79 - 3.99 (m, 1H), 4.09 - 4.19 (m, 2H), 4.39 (br t, J = 7.15 Hz, 2H), 4.53 (s, 2H), 7.22 (s, 1H), 7.46 (d, J = 9.17 Hz, 1H), 7.66 (dd, J = 9.05, 2.32 Hz, 1H), 7.75 (d, J = 2.32 Hz, 1H), 7.92 - 7.97 (m, 2H), 9.09 (s, 1H).
[00627] Example 38: Synthesis of (3R,5S)-1-(5-chloro-3-cyano-6-((1-methyl-3-(2- (methylamino)-2-oxoethoxy)-2-oxo-1,2-dihydroquinolin-6-yl)am ino)pyridin-2-yl)-5- methylpiperidine-3-carboxylic acid (78) and (3S,5R)-1-(5-chloro-3-cyano-6-((1-methyl-3-(2- (methylamino)-2-oxoethoxy)-2-oxo-1,2-dihydroquinolin-6-yl)am ino)pyridin-2-yl)-5- methylpiperidine-3-carboxylic acid (79) [00628] Methyl 5-methylpiperidine-3-carboxylate hydrochloride [00629] To a solution of methyl 5-methylpyridine-3-carboxylate (20 g, 132.31 mmol) in 1.25 N HCl/MeOH (150 mL) was added PtO2 (3.00 g, 13.23 mmol) under Ar. The flask was degassed and purged with H2 several times. The mixture was stirred under H2 (50 psi) at 25°C for 12 hours. The reaction mixture was filtered through a pad of Celite® and washed with MeOH (500 mL). The filtrate was concentrated under reduced pressure to give the title compound as a colorless oil (21 g, crude, HCl). LCMS: [M+H] + = 158.3. [00630] Methyl 1-(5-chloro-3-cyano-6-((1-methyl-3-(2-(methylamino)-2-oxoeth oxy)-2-oxo-1,2- dihydroquinolin-6-yl)amino)pyridin-2-yl)-5-methylpiperidine- 3-carboxylate [00631] To a solution of 2-[[6-[(3,6-dichloro-5-cyano-2-pyridyl)amino]-1-methyl-2-oxo -3- quinolyl]oxy]-N-methyl-acetamide (300 mg, 694.03 µmol) and methyl 5-methylpiperidine-3- carboxylate (201.62 mg, 1.04 mmol, HCl) in DMSO (5 mL) was added DIPEA (358.78 mg, 2.78 mmol, 483.54 µL). The mixture was stirred at 100°C for 12 hr. The mixture was cooled to 20°C and water (3 mL) was added, forming a precipitate which was filtered and the filter cake was concentrated to give the title compound as a yellow solid (300 mg, 542.49 µmol, 78% yield). LCMS: [M+H] + = 553.2. [00632] 1-(5-Chloro-3-cyano-6-((1-methyl-3-(2-(methylamino)-2-oxoeth oxy)-2-oxo-1,2- dihydroquinolin-6-yl)amino)pyridin-2-yl)-5-methylpiperidine- 3-carboxylic acid (cis) [00633] To a solution of methyl 1-[5-chloro-3-cyano-6-[[1-methyl-3-[2-(methylamino)-2-oxo- ethoxy]-2-oxo-6-quinolyl]amino]-2-pyridyl]-5-methyl-piperidi ne-3-carboxylate (250 mg, 452.07 µmol) in H2O (2 mL), MeOH (2 mL) and DMSO (2 mL) was added LiOH . H2O (189.71 mg, 4.52 mmol). The mixture was stirred at 25°C for 12 hr. Then 1N HCl (10 mL) was added to the mixture (combined with another batch of 50 mg scale) at which point pH=4, and the mixture was extracted with ethyl acetate (10 mL x2). The combined organic phase was washed with brine (20 mL), dried with anhydrous Na2SO4, filtered and concentrated in vacuo. The residue was purified by prep- HPLC (column: Phenomenex Luna 80*30mm*3µm; mobile phase: [water(TFA)-ACN]; B%: 30%-60%, 8min) to give the title compound as a white solid (60 mg, 95% purity, cis). 1 H NMR (400 MHz, DMSO-d6) δ 9.08 - 9.18 (m, 1H), 7.95 - 8.04 (m, 2H), 7.78 (d, J = 2.38 Hz, 1H), 7.61 - 7.68 (m, 1H), 7.50 - 7.57 (m, 1H), 7.22 - 7.28 (m, 1H), 4.63 - 4.78 (m, 1H), 4.50 - 4.60 (m, 2H), 4.27 - 4.40 (m, 2H), 4.13 (br d, J = 12.51 Hz, 2H), 3.54 (br t, J = 5.69 Hz, 2H), 2.79 (br t, J = 12.76 Hz, 2H), 2.67 (d, J = 4.50 Hz, 3H), 1.96 - 2.15 (m, 2H), 1.75 - 1.86 (m, 2H), 0.82 - 0.86 (m, 6H). [00634] (3R,5S)-1-(5-chloro-3-cyano-6-((1-methyl-3-(2-(methylamino)- 2-oxoethoxy)-2-oxo- 1,2-dihydroquinolin-6-yl)amino)pyridin-2-yl)-5-methylpiperid ine-3-carboxylic acid (78) and (3S,5R)-1-(5-chloro-3-cyano-6-((1-methyl-3-(2-(methylamino)- 2-oxoethoxy)-2-oxo-1,2- dihydroquinolin-6-yl)amino)pyridin-2-yl)-5-methylpiperidine- 3-carboxylic acid (79) [00635] Racemic 1-[5-chloro-3-cyano-6-[[1-methyl-3-[2-(methylamino)-2-oxo-et hoxy]-2-oxo- 6-quinolyl]amino]-2-pyridyl]-5-methyl-piperidine-3-carboxyli c acid (60 mg, 111.32 µmol) was separated by SFC (column: DAICEL CHIRALCEL OJ (250mm*30mm,10µm); mobile phase: [0.1%NH 3 H 2 O MeOH]; B%: 36%-36%, 10min) to give (3R,5S)-1-(5-chloro-3-cyano-6-((1- methyl-3-(2-(methylamino)-2-oxoethoxy)-2-oxo-1,2-dihydroquin olin-6-yl)amino)pyridin-2-yl)- 5-methylpiperidine-3-carboxylic acid as a white solid (10.7 mg, 19.14 µmol, 17% yield, 96% purity); 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.00 (s, 1H), 8.15 (br s, 1H), 7.89 - 7.96 (m, 2H), 7.68 (br d, J = 9.01 Hz, 1H), 7.41 (br d, J = 9.13 Hz, 1H), 7.21 (s, 1H), 4.59 (s, 2H), 4.46 (br d, J = 12.13 Hz, 1H), 4.16 (br d, J = 12.38 Hz, 1H), 3.66 (s, 3H), 2.81 (br t, J = 12.38 Hz, 1H), 2.66 (br d, J = 4.38 Hz, 3H), 2.44 (br s, 1H), 2.02 (br d, J = 12.38 Hz, 1H), 1.54 - 1.73 (m, 1H), 0.82 (br d, J = 6.38 Hz, 3H); and (3S,5R)-1-(5-chloro-3-cyano-6-((1-methyl-3-(2-(methylamino)- 2- oxoethoxy)-2-oxo-1,2-dihydroquinolin-6-yl)amino)pyridin-2-yl )-5-methylpiperidine-3- carboxylic acid as a white solid (10.5 mg, 18.84 µmol, 17% yield, 97% purity); 1 H NMR (400 MHz, DMSO-d6) δ 9.02 (s, 1H), 8.01 (br s, 1H), 7.93 (s, 1H), 7.87 (d, J = 1.88 Hz, 1 H), 7.69 (dd, J = 9.07, 2.19 Hz, 1H), 7.41 (d, J = 9.13 Hz, 1H), 7.20 (s, 1H), 4.56 (s, 2H), 4.44 (br d, J = 12.76 Hz, 1H), 4.16 (br d, J = 12.51 Hz, 1H), 3.66 (s, 3H), 2.82 (br t, J = 12.38 Hz, 1H), 2.67 (d, J = 4.50 Hz, 3H), 2.43 (br s, 1H), 2.02 (br d, J = 12.38 Hz, 1H), 1.56 - 1.71 (m, 1H), 0.82 (d, J = 6.50 Hz, 3H). [00636] The absolute configurations of compounds 78 & 79 were randomly assigned based on the carboxy group and methyl group being in cis-conformation. [00637] Example 39: Synthesis of 2-((3S,5R)-3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5- fluoro-6-((3-(3-hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-di hydro-1H-benzo[d]imidazol-5- yl)amino)nicotinonitrile hydrochloride (80) and 2-((3R,5S)-3-amino-4,4-difluoro-5- methylpiperidin-1-yl)-5-fluoro-6-((3-(3-hydroxy-3-methylbuty l)-1-methyl-2-oxo-2,3-dihydro- 1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile hydrochloride (81) [00638] 2-((3S,5R)-3-(1,3-Dioxoisoindolin-2-yl)-4,4-difluoro-5-methy lpiperidin-1-yl)-5-fluoro- 6-((3-(3-hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1 H-benzo[d]imidazol-5- yl)amino)nicotinonitrile [00639] A flask with mixture of 2-chloro-5-fluoro-6-[[3-(3-hydroxy-3-methyl-butyl)-1-methyl- 2-oxo-benzimidazol-5-yl]amino]pyridine-3-carbonitrile (200 mg, 495.25 µmol), 2-[(3S,5R)-4,4- difluoro-5-methyl-3-piperidyl]isoindoline-1,3-dione (138.80 mg, 495.25 µmol) and DIEA (320.04 mg, 2.48 mmol, 431.32 µL) in DMSO (3 mL) was degassed and purged with N 2 for 3 times, then the mixture was stirred at 130°C for 16 hr under N2 atmosphere. Water (15 mL) was added to the mixture, forming a precipitate which was filtered and washed with H2O (3 mL), and then the solid was dried under reduced pressure to give the title compound as a red solid (260 mg, 148.54 µmol, 30% yield, 37% purity). LCMS: [M+H] + = 648.1. [00640] 2-((3S,5R)-3-Amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-fl uoro-6-((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile hydrochloride (80) [00641] To a solution of 2-((3S,5R)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluoro-5- methylpiperidin-1-yl)-5-fluoro-6-((3-(3-hydroxy-3-methylbuty l)-1-methyl-2-oxo-2,3-dihydro- 1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile (260 mg, 401.45 µmol) in EtOH (16 mL) was added MeNH2/H2O (16 mL, 40% purity). The mixture was stirred at 70°C for 1 hr. The mixture was concentrated in vacuo and purified by prep-HPLC (column: Phenomenex Luna 80*30mm*3µm; mobile phase: [water(HCl)-ACN]; B%:15%-45%, 8min) to give the title compound as a yellow solid (50 mg, 84.84 µmol, 21% yield, 94% purity, HCl). 1 H NMR (400 MHz, MeOD-d4, 25°C) δ 7.60 (d, J = 10.49 Hz, 1H), 7.44 (d, J = 1.67 Hz, 1H), 7.37 (dd, J = 8.40, 1.85 Hz, 1H), 7.15 (d, J = 8.46 Hz, 1H), 4.28 - 4.45 (m, 1H), 3.97 - 4.08 (m, 3H), 3.74 - 3.89 (m, 1H), 3.43 (s, 3H), 3.23 (t, J = 12.28 Hz, 1H), 2.89 (t, J = 12.70 Hz, 1H), 2.33 - 2.56 (m, 1H), 1.86 (dd, J = 8.88, 7.57 Hz, 2H), 1.29 (d, J = 2.50 Hz, 6H), 1.06 (d, J = 6.68 Hz, 3H). [00642] 2-((3R,5S)-3-(1,3-Dioxoisoindolin-2-yl)-4,4-difluoro-5-methy lpiperidin-1-yl)-5-fluoro- 6-((3-(3-hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1 H-benzo[d]imidazol-5-yl)amino) [00643] A flask with mixture of 2-chloro-5-fluoro-6-[[3-(3-hydroxy-3-methyl-butyl)-1-methyl- 2-oxo-benzimidazol-5-yl]amino]pyridine-3-carbonitrile (200 mg, 495.25 µmol), 2-[(3R,5S)-4,4- difluoro-5-methyl-3-piperidyl]isoindoline-1,3-dione (138.80 mg, 495.25 µmol) and DIEA (320.04 mg, 2.48 mmol, 431.32 µL) in DMSO (3 mL) was degassed and purged with N2 for 3 times, and then the mixture was stirred at 130°C for 16 hr under N2 atmosphere. Water (15 mL) was added to the mixture, forming a precipitate which filtered and washed with H 2 O (3 mL), and then the solid was dried under reduced pressure to give the title compound as a red solid (270 mg, 154.25 µmol, 31% yield, 37% purity). LCMS: [M+H] + = 648.1. [00644] 2-((3R,5S)-3-Amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-fl uoro-6-((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile hydrochloride (81) [00645] To a solution of 2-((3R,5S)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluoro-5- methylpiperidin-1-yl)-5-fluoro-6-((3-(3-hydroxy-3-methylbuty l)-1-methyl-2-oxo-2,3-dihydro- 1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile (270 mg, 416.89 µmol) in EtOH (16 mL) was added MeNH2/H2O (16 mL, 40% purity). The mixture was stirred at 70°C for 1 hr. The mixture was concentrated in vacuo and purified directly with prep-HPLC (column: Phenomenex Luna 80*30mm*3µm; mobile phase: [water(HCl)-ACN]; B%:15%-45%, 8min) to give the title compound as a yellow solid (40 mg, 67.87 µmol, 16% yield, 94% purity, HCl). 1 H NMR (400 MHz, MeOD-d4, 25°C) δ 7.60 (d, J = 10.49 Hz, 1H), 7.44 (s, 1H), 7.37 (d, J = 8.34 Hz, 1H), 7.15 (d, J = 8.46 Hz, 1H), 4.32 - 4.44 (m, 1H), 3.94 - 4.12 (m, 3H), 3.73 - 3.89 (m, 1H), 3.43 (s, 3H), 3.23 (t, J = 12.22 Hz, 1H), 2.89 (t, J = 12.64 Hz, 1H), 2.35 - 2.54 (m, 1H), 1.86 (t, J = 8.11 Hz, 2H), 1.29 (d, J = 2.03 Hz, 6H), 1.05 (d, J = 6.68 Hz, 3H). [00646] The absolute configurations of compounds 80 & 81 were randomly assigned based on the amino group and methyl group being in cis-conformation.
[00647] Example 40: Synthesis of 2-((3S,5R)-4,4-difluoro-3-hydroxy-5-methylpiperidin-1-yl)- 5-fluoro-6-((3-(3-hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3- dihydro-1H-benzo[d]imidazol-5- yl)amino)nicotinonitrile (82) and 2-((3R,5S)-4,4-difluoro-3-hydroxy-5-methylpiperidin-1-yl)-5- fluoro-6-((3-(3-hydroxy-3-methylbutyl)-1-methyl-2-oxo-2,3-di hydro-1H-benzo[d]imidazol-5- yl)amino)nicotinonitrile (83) [00648] 2-(4,4-Difluoro-3-hydroxy-5-methylpiperidin-1-yl)-5-fluoro-6 -((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile [00649] A flask with mixture of 2-chloro-5-fluoro-6-[[3-(3-hydroxy-3-methyl-butyl)-1-methyl- 2-oxo-benzimidazol-5-yl]amino]pyridine-3-carbonitrile (300 mg, 742.87 µmol), (3R,5S)-4,4- difluoro-5-methyl-piperidin-3-ol (278.75 mg, 1.49 mmol, HCl), DIEA (480.06 mg, 3.71 mmol, 646.98 µL) in DMSO (3 mL) was degassed and purged with N 2 for 3 times, and then the mixture was stirred at 130°C for 12 hr under N2 atmosphere. The mixture was cooled to 15°C and purified directly with prep-HPLC (column: Waters Xbridge Prep OBD C18 150*40mm*10µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 35%-55%, 8 min) to give the title compound as a yellow solid (150 mg, 286.39 µmol, 39% yield, 99% purity). 1 H NMR (400 MHz, MeCN-d3) δ 7.80 (br s, 1H), 7.45 - 7.50 (m, 2H), 7.20 (dd, J = 8.40, 1.97 Hz, 1H), 7.01 (d, J = 8.34 Hz, 1H), 4.19 - 4.28 (m, 1H), 3.99 - 4.06 (m, 1H), 3.90 - 3.98 (m, 3H), 3.76 - 3.90 (m, 1H), 3.34 (s, 3H), 2.96 - 3.05 (m, 1H), 2.94 (s, 1H), 2.88 (t, J = 12.64 Hz, 1H), 2.14 - 2.26 (m, 1H), 1.77 - 1.85 (m, 2H), 1.22 (d, J = 2.03 Hz, 6H), 0.99 (d, J = 6.79 Hz, 3H). [00650] 2-((3S,5R)-4,4-difluoro-3-hydroxy-5-methylpiperidin-1-yl)-5- fluoro-6-((3-(3-hydroxy- 3-methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazo l-5-yl)amino)nicotinonitrile (82) and 2-((3R,5S)-4,4-difluoro-3-hydroxy-5-methylpiperidin-1-yl)-5- fluoro-6-((3-(3-hydroxy-3- methylbutyl)-1-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol- 5-yl)amino)nicotinonitrile (83) [00651] 2-[(3R,5S)-4,4-difluoro-3-hydroxy-5-methyl-1-piperidyl]-5-fl uoro-6-[[3-(3-hydroxy-3- methyl-butyl)-1-methyl-2-oxo-benzimidazol-5-yl]amino]pyridin e-3-carbonitrile (150 mg, 289.28 µmol) was separated by SFC (column: DAICEL CHIRALPAK IG (250mm*30mm,10µm); mobile phase: [Heptane-EtOH]; B%: 20%-20%, 10min) to give 2-[(3S,5R)-4,4-difluoro-3-hydroxy-5- methyl-1-piperidyl]-5-fluoro-6-[[3-(3-hydroxy-3-methyl-butyl )-1-methyl-2-oxo-benzimidazol-5- yl]amino]pyridine-3-carbonitrile as a white solid (45 mg, 85.92 µmol, 30% yield, 99% purity); 1 H NMR (400 MHz, MeOD-d 4 ) δ 7.34 - 7.43 (m, 2H), 7.26 (br d, J = 8.44 Hz, 1H), 7.01 (br d, J = 8.44 Hz, 1H), 4.16 (br d, J = 12.47 Hz, 1H), 3.88 - 3.98 (m, 3H), 3.71 (ddd, J = 15.28, 10.45, 5.20 Hz, 1H), 3.20 (br s, 3H), 2.91 (br t, J = 11.98 Hz, 1H), 2.75 (br t, J = 12.53 Hz, 1H), 1.96 - 2.12 (m, 1H), 1.71 - 1.79 (m, 2H), 1.17 (s, 6H), 0.89 (br d, J = 6.72 Hz, 3H); and 2-[(3R,5S)-4,4- difluoro-3-hydroxy-5-methyl-1-piperidyl]-5-fluoro-6-[[3-(3-h ydroxy-3-methyl-butyl)-1-methyl- 2-oxo-benzimidazol-5-yl]amino]pyridine-3-carbonitrile as a white solid (45 mg, 85.92 µmol, 30% yield, 99% purity). 1 H NMR (400 MHz, MeOD-d4) δ 7.35 - 7.43 (m, 2H), 7.25 (br d, J = 8.31 Hz, 1H), 7.01 (br d, J = 8.19 Hz, 1H), 4.16 (br d, J = 12.10 Hz, 1H), 3.93 (br d, J = 8.19 Hz, 3H), 3.64 - 3.78 (m, 1H), 3.20 (br s, 3H), 2.70 - 2.96 (m, 2H), 1.95 - 2.12 (m, 1H), 1.69 - 1.80 (m, 2H), 1.17 (s, 6H), 0.88 (br d, J = 6.60 Hz, 3H). [00652] The absolute configurations of compounds 82 & 83 were randomly assigned based on the hydroxyl group and methyl group being in cis-conformation.
[00653] Example 41: Synthesis of 2-((3S,5R)-3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5- fluoro-6-((1-methyl-2-oxo-3-(((R)-2-oxooxazolidin-5-yl)methy l)-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile (84) and 2-[(3R,5S)-3-amino-4,4-difluoro-5-methyl- 1-piperidyl]-5-fluoro-6-[[1-methyl-2-oxo-3-[[(5S)-2-oxooxazo lidin-5-yl]methyl]benzimidazol-5- yl] amino]pyridine-3-carbonitrile (85) [00654] 5-((3-Methyl-6-nitro-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1 -yl)methyl)oxazolidin- 2-one [00655] A flask with mixture of 1-methyl-5-nitro-1H-benzo[d]imidazol-2(3H)-one (5 g, 25.89 mmol), 5-(chloromethyl)oxazolidin-2-one (5.26 g, 38.84 mmol), K 2 CO 3 (7.16 g, 51.78 mmol) and KI (2.15 g, 12.95 mmol) in DMSO (50 mL) was degassed and purged with N2 for 3 times, and then the mixture was stirred at 80°C for 6 hr under N 2 atmosphere. Water (80 mL) was added to mixture, forming a precipitate which was filtered and washed with H 2 O (20 mL) and petroleum ether/ethyl acetate = (1:1, 30 mL). The solid was dried under reduced pressure to give the title compound as a yellow solid (5.5 g, 18.07 mmol, 70% yield, 96% purity). LCMS: [M+H] + = 293.1. [00656] 5-((6-Amino-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1 - yl)methyl)oxazolidin-2-one [00657] To a mixture of Pd/C (1 g, 10% purity) in DMF (300 mL) was added 5-((3-methyl-6- nitro-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)methyl)oxaz olidin-2-one (5.5 g, 18.82 mmol). The mixture was stirred at 50°C for 20 hr under H 2 (50 psi). Celite® was added to the mixture and filtered to give a filtrate which concentrated and purified by column chromatography (SiO2, Ethyl acetate/EtOH = 1/0 to 1/1) to give the title compound as a yellow solid (3.3 g, 11.83 mmol, 63% yield, 94% purity). 1 H NMR (400 MHz, DMSO-d6) δ 7.53 (s, 1H), 6.80 (d, J = 8.23 Hz, 1H), 6.46 (d, J = 1.19 Hz, 1H), 6.33 (dd, J = 8.23, 1.55 Hz, 1H), 4.75 - 4.89 (m, 3H), 3.89 - 4.00 (m, 2H), 3.57 (t, J = 8.82 Hz, 1H), 3.31 (dd, J = 8.58, 6.56 Hz, 1H), 3.23 (s, 3H). [00658] (R)-5-((6-Amino-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidaz ol-1- yl)methyl)oxazolidin-2-one [00659] Racemic 5-((6-amino-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1 - yl)methyl)oxazolidin-2-one (2.7 g, 10.29 mmol) was separated with SFC (column: DAICEL CHIRALPAK AD (250mm*50mm,10µm); mobile phase: [0.1% NH3H2O MeOH]; B%: 50%- 50%, 3.9min) to give the title compound as a yellow solid (1.2 g, 4.26 mmol, 41% yield, 93% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 7.55 (s, 1H), 6.80 (d, J = 8.4 Hz, 1H), 6.47 (s, 1H), 6.35 (dd, J = 8.0, 2.4 Hz, 1H), 4.83 - 4.88 (m, 2H), 3.93 - 4.00 (m, 2H), 3.58 (t, J = 8.8 Hz, 1H), 3.32 (dd, J = 8.8 Hz, 6.4 Hz, 1H), 3.23 (s, 3H). [00660] (R)-2-Chloro-5-fluoro-6-((1-methyl-2-oxo-3-((2-oxooxazolidin -5-yl)methyl)-2,3- dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile [00661] A flask with mixture of 5-[(6-amino-3-methyl-2-oxo-benzimidazol-1- yl)methyl]oxazolidin-2-one (600 mg, 2.29 mmol), 2,6-dichloro-5-fluoro-pyridine-3-carbonitrile (436.94 mg, 2.29 mmol) and DIEA (591.34 mg, 4.58 mmol, 796.96 µL) in DMSO (6 mL) was degassed and purged with N2 for 3 times, and then the mixture was stirred at 100°C for 2 hr under N 2 atmosphere. Water (30 mL) was added to the mixture, forming a precipitate which was filtered and washed with H 2 O (20 mL) and ethyl acetate (10 mL). The solid was dried under reduced pressure to give the title compound as a yellow solid (700 mg, 1.55 mmol, 68% yield, 92% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.96 (s, 1H), 8.09 (d, J = 10.27 Hz, 1H), 7.45 - 7.60 (m, 2H), 7.27 (d, J = 7.70 Hz, 1H), 7.11 (d, J = 7.95 Hz, 1H), 4.86 (s, 1H), 3.92 - 4.12 (m, 2H), 3.56 (t, J = 7.83 Hz, 1H), 3.30 (s, 4H). [00662] 2-((3S,5R)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluoro-5-methy lpiperidin-1-yl)-5-fluoro- 6-((1-methyl-2-oxo-3-(((R)-2-oxooxazolidin-5-yl)methyl)-2,3- dihydro-1H-benzo[d]imidazol-5- yl)amino)nicotinonitrile [00663] A flask with mixture of (R)-2-chloro-5-fluoro-6-((1-methyl-2-oxo-3-((2-oxooxazolidin - 5-yl)methyl)-2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nico tinonitrile (500 mg, 1.20 mmol), 2-[(3R,5S)-4,4-difluoro-5-methyl-3-piperidyl]isoindoline-1,3 -dione (336.22 mg, 1.20 mmol) and DIEA (310.08 mg, 2.40 mmol, 417.90 µL) in DMSO (5 mL) was degassed and purged with N 2 for 3 times, and then the mixture was stirred at 130°C for 10 hr under N2 atmosphere. The mixture was concentrated in vacuo without further work-up. The residue was purified by prep-HPLC (column: Phenomenex C1880*40mm*3µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 25%- 45%, 8min) to give the title compound as a white solid (230 mg, 344.69 µmol, 29% yield, 99% purity). LCMS: [M+H] + = 661.3. [00664] 2-((3S,5R)-3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-fl uoro-6-((1-methyl-2-oxo- 3-(((R)-2-oxooxazolidin-5-yl)methyl)-2,3-dihydro-1H-benzo[d] imidazol-5- yl)amino)nicotinonitrile (84) [00665] A flask with mixture of 2-((3S,5R)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluoro-5- methylpiperidin-1-yl)-5-fluoro-6-((1-methyl-2-oxo-3-(((R)-2- oxooxazolidin-5-yl)methyl)-2,3- dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile (230 mg, 348.17 µmol) in EtOH (15 mL) and MeNH2 (15 mL, 40% purity) was degassed and purged with N2 for 3 times, and then the mixture was stirred at 70°C for 1 hr under N 2 atmosphere. The mixture was concentrated in vacuo and purified directly with prep-HPLC (column: Phenomenex C1880*40mm*3µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 20%-40%, 8min) to give the title compound as a white solid (40 mg, 74.65 µmol, 21% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d 6 , 25°C) δ 9.46 (s, 1H), 7.82 (d, J = 10.85 Hz, 1H), 7.63 (d, J = 1.31 Hz, 1H), 7.53 (s, 1H), 7.34 (d, J = 7.03 Hz, 1H), 7.13 (d, J = 8.34 Hz, 1H), 4.90 (d, J = 2.38 Hz, 1H), 4.03 - 4.22 (m, 3H), 3.95 - 4.02 (m, 1H), 3.59 (t, J = 8.94 Hz, 1H), 3.35 (s, 3H), 2.90 - 3.07 (m, 1H), 2.78 (q, J = 12.12 Hz, 2H), 2.08 - 2.22 (m, 1H), 1.69 (s, 2H), 0.90 (d, J = 6.68 Hz, 3H).
[00666] (S)-5-((3-Methyl-6-nitro-2-oxo-2,3-dihydro-1H-benzo[d]imidaz ol-1-yl)methyl) oxazolidin-2-one [00667] A flask with mixture of 3-methyl-6-nitro-1H-benzimidazol-2-one (5 g, 25.89 mmol), (5S)-5-(chloromethyl)oxazolidin-2-one (4.21 g, 31.06 mmol), K 2 CO 3 (7.16 g, 51.77 mmol) and KI (2.15 g, 12.94 mmol) in DMSO (50 mL) was degassed and purged with N 2 for 3 times, and then the mixture was stirred at 80°C for 6 hrs under N2 atmosphere. Water (40 mL) was added to the mixture, forming a precipitate which was filtered and washed with H2O (15 mL) and ethyl acetate (30 mL). The solid was dried under reduced pressure to give the title compound as a yellow solid (4 g, 12.87 mmol, 50% yield, 94% purity). 1 H NMR (400 MHz, DMSO-d6) δ 8.22 (d, J = 2.0 Hz, 1H), 8.08 (dd, J = 8.4, 2.0 Hz, 1H), 7.55 (s, 1H), 7.38 (d, J = 8.8 Hz, 1H), 4.88 - 4.98 (m, 1H), 4.15 - 4.34 (m, 2H), 3.59 - 3.68 (m, 1H), 3.43 (s, 3H), 3.33 (dd, J = 9.05, 6.24 Hz, 1H). [00668] (S)-5-((6-Amino-3-methyl-2-oxo-2,3-dihydro-1H-benzo[d]imidaz ol-1-yl)methyl) oxazolidin-2-one [00669] To a suspension of Pd/C (300 mg, 10% purity) in DMF (100 mL) was added (S)-5-((3- methyl-6-nitro-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)me thyl)oxazolidin-2-one (4 g, 13.69 mmol). The mixture was stirred at 50°C for 20 hr under H2 (50 psi). The mixture was filtered with Celite® and the filtrate was concentrated to give a residue which was purified by silica gel column chromatography (silica gel, Ethyl acetate/EtOH = 1/0 to 1/1) to give the title compound as a yellow solid (2 g, 6.71 mmol, 49% yield, 88% purity). 1 H NMR (400 MHz, DMSO-d6) δ 7.53 (s, 1 H), 6.80 (br d, J = 8.0 Hz, 1H), 6.47 (s, 1H), 6.34 (br d, J = 8.0 Hz, 1H), 4.65 - 5.07 (m, 3H), 3.87 - 4.03 (m, 2H), 3.57 (br t, J = 8.8 Hz, 1H), 3.28 - 3.35 (m, 1H), 3.24 (s, 3H). [00670] (S)-2-Chloro-5-fluoro-6-((1-methyl-2-oxo-3-((2-oxooxazolidin -5-yl)methyl)-2,3- dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile [00671] A flask with mixture of (S)-5-((6-amino-3-methyl-2-oxo-2,3-dihydro-1H- benzo[d]imidazol-1-yl)methyl)oxazolidin-2-one (1 g, 3.81 mmol), 2,6-dichloro-5-fluoro-pyridine- 3-carbonitrile (728.24 mg, 3.81 mmol) and DIEA (985.59 mg, 7.63 mmol, 1.33 mL) in DMSO (10 mL) was degassed and purged with N2 for 3 times, then the mixture was stirred at 100°C for 2 hr under N2 atmosphere. Water (25 mL) was added to the mixture, forming a precipitate which was filtered and washed with H 2 O (10 mL) and ethyl acetate (15 mL). The solid was dried under reduced pressure to give the title compound as a yellow solid (1.1g, 2.51 mmol, 66% yield, 95% purity). LCMS: [M+H] + = 417.1. [00672] 2-((3R,5S)-3-(1,3-Dioxoisoindolin-2-yl)-4,4-difluoro-5-methy lpiperidin-1-yl)-5-fluoro- 6-((1-methyl-2-oxo-3-(((S)-2-oxooxazolidin-5-yl)methyl)-2,3- dihydro-1H-benzo[d]imidazol-5- yl)amino)nicotinonitrile [00673] A flask with mixture of (S)-2-chloro-5-fluoro-6-((1-methyl-2-oxo-3-((2-oxooxazolidin - 5-yl) methyl)-2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinon itrile (600 mg, 1.44 mmol), 2-((3R,5S)-4,4-difluoro-5-methylpiperidin-3-yl)isoindoline-1 ,3-dione (403.47 mg, 1.44 mmol) and DIEA (372.11 mg, 2.88 mmol, 501.49 µL) in DMSO (6 mL) was degassed and purged with N 2 for 3 times, then the mixture was stirred at 130°C for 10 hrs under N 2 atmosphere. The mixture was concentrated in vacuo without further work-up. The residue was purified by prep-HPLC (column: Waters Xbridge BEH C18100*30 mm*10µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 40%-60%, 8 min) to give the title compound as a white solid (270 mg, 396.46 µmol, 28% yield, 97% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.62 (s, 1H), 7.87 - 7.95 (m, 4H), 7.52 (s, 1H), 7.46 (d, J = 2.0 Hz, 1H), 7.18 (dd, J = 8.0, 2.0 Hz, 1H), 6.94 (d, J = 8.4 Hz, 1H), 4.81 - 4.91 (m, 1H), 4.44 - 4.57 (m, 1H), 4.20 - 4.39 (m, 3H), 3.87 - 3.94 (m, 1H), 3.76 - 3.84 (m, 1H), 3.57 (t, J = 8.0 Hz, 1H), 3.15 - 3.30 (m, 2H), 3.05 (s, 3H), 2.18 - 2.40 (m, 1H), 0.96 (d, J = 6.8 Hz, 3H). [00674] 2-((3R,5S)-3-Amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-fl uoro-6-((1-methyl-2-oxo- 3-(((S)-2-oxooxazolidin-5-yl)methyl)-2,3-dihydro-1H-benzo[d] imidazol-5- yl)amino)nicotinonitrile (85) [00675] To a solution of 2-((3R,5S)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluoro-5- methylpiperidin-1-yl)-5-fluoro-6-((1-methyl-2-oxo-3-(((S)-2- oxooxazolidin-5-yl)methyl)-2,3- dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile (270 mg, 408.72 µmol) in EtOH (20 mL) was added MeNH 2 /H 2 O (31.73 mg, 408.72 µmol, 20 mL, 40% purity). The mixture was stirred at 70°C for 1 hr. The mixture was concentrated in vacuo and purified directly with prep- HPLC (column: Phenomenex C18 75*30 mm*3µm; mobile phase: [water (NH4HCO3)-ACN]; B%: 25%-45%, 8 min) to give the title compound as a white solid (40 mg, 75.40 µmol, 18% yield, 100% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.48 (s, 1H), 7.83 (d, J = 10.8 Hz, 1H), 7.65 (d, J = 2.0 Hz, 1H), 7.54 (s, 1H), 7.35 (dd, J = 8.0, 4.0 Hz, 1H), 7.14 (d, J = 8.0 Hz, 1H), 4.86 - 4.99 (m, 1H), 4.06 - 4.19 (m, 3H), 3.99 (br d, J = 16.0 Hz, 1H), 3.61 (t, J = 8.0 Hz, 1H), 3.36 (s, 3H), 2.93 - 3.11 (m, 1H), 2.70 - 2.88 (m, 2H), 2.07 - 2.23 (m, 1H), 1.70 (br s, 2H), 0.91 (d, J = 8.0 Hz, 3H). [00676] The absolute configurations of compounds 84 & 85 were randomly assigned based on the amino group and methyl group being in cis-conformation. [00677] Example 42: Synthesis of 5-fluoro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((1-methyl-2-oxo-3-(((R)-2-oxooxazolidin-5-yl)methyl)-2,3- dihydro-1H-benzo[d]imidazol-5- yl)amino)nicotinonitrile (86) and 5-fluoro-2-[(3S,4S,5R)-4-fluoro-3,5-dimethyl-1-piperidyl]-6- [[1-methyl-2-oxo-3-[[(5S)-2-oxooxazolidin-5-yl]methyl]benzim idazol-5-yl]amino]pyridine-3- carbonitrile (87) [00678] 2-Chloro-5-fluoro-6-((1-methyl-2-oxo-2,3-dihydro-1H-benzo[d] imidazol-5- yl)amino)nicotinonitrile [00679] To a solution of 6-amino-3-methyl-1H-benzimidazol-2-one (1 g, 6.13 mmol) and 2,6- dichloro-5-fluoro-pyridine-3-carbonitrile (1.17 g, 6.13 mmol) in DMSO (10 mL) was added DIPEA (1.58 g, 12.26 mmol, 2.13 mL). The mixture was stirred at 100°C for 2 hr. The mixture was cooled to 15°C and water (10 mL) was added, forming a precipitate which was filtered and the filter cake was washed with EtOAc (50 mL). The filter cake was dried in vacuo to give the title compound as a yellow solid (1.8 g, 5.10 mmol, 83% yield, 90% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 10.89 (s, 1H), 9.86 (s, 1H), 8.12 (d, J =,10.8 Hz, 1H), 7.38 (d, J = 1.6 Hz, 1H), 7.26 (dd, J = 8.4, 1.6 Hz, 1H), 7.06 (d, J = 8.4 Hz, 1H), 2.54 (s, 3H). [00680] 5-Fluoro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((1-methyl-2-oxo-2,3- dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile [00681] To a solution of 2-chloro-5-fluoro-6-[(1-methyl-2-oxo-3H-benzimidazol-5- yl)amino]pyridine-3-carbonitrile (1 g, 3.15 mmol) and (3S,4S,5R)-4-fluoro-3,5-dimethyl- piperidine (1.54 g, 6.30 mmol, TFA) in DMSO (10 mL) was added DIPEA (2.03 g, 15.74 mmol, 2.74 mL). The mixture was stirred at 100°C for 12 hr. Water (5 mL) was added to the mixture, forming a precipitate which was filtered and the filter cake was washed by water (10 mL) and EtOAc (20 mL) and then the filter cake was dried in vacuo to give the title compound as a yellow solid (1 g, 2.34 mmol, 74% yield, 96% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 10.85 (s, 1H), 9.31 (s, 1H), 7.73 (d, J = 10.4 Hz, 1H), 7.32 (s, 2H), 7.01 (d, J = 7.6 Hz, 1H), 4.42 - 4.65 (m, 1H), 3.90 (d, J = 11.6 Hz, 2H), 3.26 (s, 3H), 2.82 (t, J = 12 Hz, 2H), 1.73 - 1.97 (m, 2H), 0.91 (d, J = 5.2 Hz, 6H). [00682] 5-Fluoro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((1-methyl-2-oxo-3- (((R)-2-oxooxazolidin-5-yl)methyl)-2,3-dihydro-1H-benzo[d]im idazol-5-yl)amino)nicotinonitrile (86) [00683] To a mixture of 5-fluoro-2-[(3S,4S,5R)-4-fluoro-3,5-dimethyl-1-piperidyl]-6- [(1- methyl-2-oxo-3H-benzimidazol-5-yl)amino]pyridine-3-carbonitr ile (100 mg, 242.46 µmol) and (R)-5-(chloromethyl)oxazolidin-2-one (49.30 mg, 363.69 µmol) in DMSO (1 mL) was added K 2 CO 3 (67.02 mg, 484.92 µmol) and KI (20.12 mg, 121.23 µmol), then the reaction mixture was stirred at 100°C for 12 hr. The reaction mixture was filtered and the filtrate was then purified by prep-HPLC (column: Waters Xbridge Prep OBD C18 150*40mm*10µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 35%-55%, 8min) to give the title compound as a white solid (40 mg, 77.96 µmol, 32% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.40 (s, 1H), 7.77 (d, J = 10.8 Hz, 1H), 7.59 - 7.51 (m, 2H), 7.38 (dd, J = 1.6, 8.4 Hz, 1H), 7.11 (d, J = 8.4 Hz, 1H), 4.96 - 4.83 (m, 1H), 4.61 - 4.40 (m, 1H), 4.12 - 4.04 (m, 1H), 4.02 - 3.95 (m, 1H), 3.87 (dd, J = 4.0, 12.8 Hz, 2H), 3.59 (t, J = 8.8 Hz, 1H), 3.34 (s, 3H), 3.31 - 3.29 (m, 1H), 2.85 - 2.74 (m, 2H), 2.00 - 1.75 (m, 2H), 0.89 (d, J = 6.8 Hz, 6H). [00684] 5-Fluoro-2-[(3S,4S,5R)-4-fluoro-3,5-dimethyl-1-piperidyl]-6- [[1-methyl-2-oxo-3- [[(5S)-2-oxooxazolidin-5-yl]methyl]benzimidazol-5-yl]amino]p yridine-3-carbonitrile (87) [00685] To a solution of 5-fluoro-2-[(3S,4S,5R)-4-fluoro-3,5-dimethyl-1-piperidyl]-6- [(1- methyl-2-oxo-3H-benzimidazol-5-yl)amino]pyridine-3-carbonitr ile (150 mg, 363.69 µmol) in DMSO (1.5 mL) was added K 2 CO 3 (100.53 mg, 727.39 µmol, 2 eq), KI (30.19 mg, 181.85 µmol) and (S)-5-(chloromethyl)oxazolidin-2-one (49.30 mg, 363.69 µmol). The mixture was stirred at 60°C for 2 hr. The reaction mixture was filtered and the filtrate was purified by prep-HPLC (column: Waters Xbridge Prep OBD C18150*40mm*10µm; mobile phase: [water(NH 4 HCO 3 )- ACN]; B%: 35%-50%, 8min) to give the title compound as a white solid (30 mg, 58.65 µmol, 48% yield). 1 H NMR (400 MHz, DMSO-d6) δ 9.40 (s, 1H), 7.77 (d, J = 10.97 Hz, 1H), 7.50 - 7.61 (m, 2H), 7.38 (dd, J = 8.46, 1.79 Hz, 1H), 7.11 (d, J = 8.46 Hz, 1H).4.82 - 4.97 (m, 1H), 4.42 - 4.62 (m, 1H), 4.03 - 4.15 (m, 1H), 3.96 - 4.02 (m, 1H), 3.87 (br dd, J = 12.99, 4.05 Hz, 2H), 3.59 (t, J = 8.82 Hz, 1H), 3.34 (s, 3H), 3.31 - 3.29 (m, 1H), 2.74 - 2.85 (m, 2H), 2.00 - 1.75 (m, 2H), 0.89 (d, J = 6.91 Hz, 6H). [00686] The absolute configurations of compounds 86 & 87 were randomly assigned based on all the substituents of the piperidine ring being in cis-conformation.
[00687] Example 43: Synthesis of 5-fluoro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((1-methyl-2-oxo-3-(((R)-2-oxooxazolidin-4-yl)methyl)-2,3- dihydro-1H-benzo[d]imidazol-5- yl)amino)nicotinonitrile (88) and 5-fluoro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6- ((1-methyl-2-oxo-3-(((S)-2-oxooxazolidin-4-yl)methyl)-2,3-di hydro-1H-benzo[d]imidazol-5- yl)amino)nicotinonitrile (89) [00688] 5-Fluoro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((1-methyl-2-oxo-3- (((R)-2-oxooxazolidin-4-yl)methyl)-2,3-dihydro-1H-benzo[d]im idazol-5-yl)amino)nicotinonitrile (88) [00689] A flask with mixture of 5-fluoro-2-[(3S,5R)-4-fluoro-3,5-dimethyl-1-piperidyl]-6-[(1 - methyl-2-oxo-3H-benzimidazol-5-yl)amino]pyridine-3-carbonitr ile (100 mg, 242.46 µmol), [(4S)-2-oxooxazolidin-4-yl]methyl 4-methylbenzenesulfonate (98.67 mg, 363.69 µmol), K 2 CO 3 (67.02 mg, 484.92 µmol) and KI (20.12 mg, 121.23 µmol) in DMSO (2 mL) was degassed and purged with N2 for 3 times, and then the mixture was stirred at 80°C for 6 hr under N2 atmosphere. The reaction mixture was filtered and the filtrate was purified by prep-HPLC (column: Phenomenex C18 75*30mm*3µm; mobile phase: [water(NH4HCO3)-ACN]; B%: 35%-55%, 8min) to give the title compound as a white solid (37 mg, 72.33 µmol, 30% yield, 100% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 9.38 (s, 1H), 7.83 (s, 1H), 7.77 (d, J = 10.88 Hz, 1H), 7.49 (d, J = 1.34 Hz, 1H), 7.34 (dd, J = 8.38, 1.65 Hz, 1H), 7.10 (d, J = 8.44 Hz, 1H), 4.42 - 4.59 (m, 1H), 4.33 - 4.40 (m, 1H), 4.18 (q, J =4 .69 Hz, 2H), 3.80 - 3.95 (m, 4H), 3.33 (s, 3H), 2.78 (br t, J = 12.41 Hz, 2H), 1.77 - 1.98 (m, 2H), 0.88 (dd, J = 6.85, 3.42 Hz, 6H). [00690] 5-Fluoro-2-((3S,4S,5R)-4-fluoro-3,5-dimethylpiperidin-1-yl)- 6-((1-methyl-2-oxo-3- (((S)-2-oxooxazolidin-4-yl)methyl)-2,3-dihydro-1H-benzo[d]im idazol-5-yl)amino)nicotinonitrile (89) [00691] A flask with mixture of 5-fluoro-2-[(3S,5R)-4-fluoro-3,5-dimethyl-1-piperidyl]-6-[(1 - methyl-2-oxo-3H-benzimidazol-5-yl)amino]pyridine-3-carbonitr ile (100 mg, 242.46 µmol), [(4R)-2-oxooxazolidin-4-yl]methyl 4-methylbenzenesulfonate (98.67 mg, 363.69 µmol), K2CO3 (67.02 mg, 484.93 µmol) and KI (20.12 mg, 121.23 µmol) in DMSO (2 mL) was degassed and purged with N2 for 3 times, and then the mixture was stirred at 80°C for 6 hr under N2 atmosphere. The reaction mixture was filtered and the filtrate was purified by prep-HPLC (column: Phenomenex C18 75*30mm*3µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 35%-60%, 8min) to give the title compound as a white solid (25 mg, 48.87 µmol, 20% yield, 100% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.39 (s, 1H), 7.84 (s, 1H), 7.78 (d, J = 10.88 Hz, 1H), 7.49 (d, J = 1.71 Hz, 1H), 7.35 (dd, J = 8.44, 1.71 Hz, 1H), 7.11 (d, J = 8.44 Hz, 1H), 4.44 - 4.59 (m, 1H), 4.34 - 4.41 (m, 1H), 4.16 - 4.21 (m, 2H), 3.80 - 3.95 (m, 4H), 3.34 (s, 3H), 2.74 - 2.83 (m, 2H), 1.79 - 1.97 (m, 2H), 0.89 (dd, J = 6.85, 3.42 Hz, 6H). [00692] The absolute configurations of compounds 88 & 89 were randomly assigned based on all the substituents of the piperidine ring being in cis-conformation.
[00693] Example 44: Synthesis of 2-((3R,5S)-3-amino-4,4-difluoro-5-methylpiperidin-1-yl)-5- fluoro-6-((3-(3-hydroxy-3-methylbutyl)-1-((S)-2-hydroxypropy l)-2-oxo-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile (90) and 2-((3R,5S)-3-amino-4,4-difluoro-5- methylpiperidin-1-yl)-5-fluoro-6-((3-(3-hydroxy-3-methylbuty l)-1-((S)-2-hydroxypropyl)-2-oxo- 2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile (91) [00694] (S)-1-((2-Amino-4-nitrophenyl)amino)propan-2-ol [00695] A mixture of 2-fluoro-5-nitroaniline (6 g, 38.43 mmol) and (S)-1-aminopropan-2-ol (11.55 g, 153.73 mmol, 12.10 mL) in NMP (120 mL) was stirred at 100°C for 12 hr. The reaction mixture (combined with another batch at same scale) was treated with H2O (300 mL), forming a precipitate which was filtered and the solid was washed with solvent (Petroleum ether/Ethyl acetate =2:1, 500 mL). The filter cake was collected and dried in vacuo to give the title compound as a yellow solid (15 g, 65.34 mmol, 85% yield, 92% purity). 1 H NMR (400 MHz, DMSO-d6) δ 7.51 (d, J = 8.8 Hz, 1H), 7.42 (d, J = 2.0 Hz, 1H), 6.50 (d, J = 8.8 Hz, 1H), 5.90 (s, 1H), 5.17 (s, 2H), 4.86 (s, 1H), 3.81 - 3.93 (m, 1H), 3.05 - 3.21 (m, 2H), 1.13 (d, J = 6.0 Hz, 3H). LCMS: [M+H] + = 212.3. [00696] (S)-1-(2-Hydroxypropyl)-5-nitro-1H-benzo[d]imidazol-2(3H)-on e [00697] To a solution of (S)-1-((2-amino-4-nitrophenyl)amino)propan-2-ol (15 g, 71.02 mmol) in MeCN (150 mL) and NMP (15 mL) was added DSC (19.10 g, 74.57 mmol). The mixture was stirred at 15°C for 12 hr. The reaction mixture was filtered to give a filter cake which was washed with solvent (Petroleum ether/Ethyl acetate =1:1, 80 mL), collected and dried in vacuo to give the title compound as a yellow solid (9 g, 37.18 mmol, 52% yield, 98% purity). 1 H NMR (400 MHz, DMSO-d6) δ 11.40 (s, 1H), 7.99 (dd, J = 8.8, 2.0 Hz, 1H), 7.74 (d, J = 2.0 Hz, 1H), 7.35 (d, J = 8.8 Hz, 1H), 4.91 (d, J = 4.8 Hz, 1H), 3.96 (m, 1H), 3.71 - 3.79 (m, 2H), 1.10 (d, J = 6.0 Hz, 3H). [00698] (S)-3-(3-Hydroxy-3-methylbutyl)-1-(2-hydroxypropyl)-5-nitro- 1H-benzo[d]imidazol- 2(3H)-one [00699] To a solution of (S)-1-(2-hydroxypropyl)-5-nitro-1H-benzo[d]imidazol-2(3H)-on e (4 g, 16.86 mmol) and 3-hydroxy-3-methylbutyl 4-methylbenzenesulfonate (6.97 g, 26.98 mmol) in DMF (50 mL) was added Cs2CO3 (10.99 g, 33.73 mmol). The mixture was stirred at 120°C for 2 hr. Then water (80 mL) was added to the mixture (combined with another batch of 1 g scale), and extracted with EtOAc (100 mL x3). The combined organic phase was washed with brine (150 mL), dried with anhydrous Na2SO4, filtered and concentrated in vacuo to give the title compound as a yellow oil (6.5 g, 91% purity). LCMS: [M+H] + = 324.3. [00700] (S)-5-Amino-3-(3-hydroxy-3-methylbutyl)-1-(2-hydroxypropyl)- 1H-benzo[d]imidazol- 2(3H)-one [00701] To a solution of (S)-3-(3-hydroxy-3-methylbutyl)-1-(2-hydroxypropyl)-5-nitro- 1H- benzo[d]imidazol-2(3H)-one (6.5 g, 20.10 mmol) in DMF (100 mL) was added Pd/C (2 g, 10% purity) under Ar. The flask was degassed under vacuum and purged with H 2 for three times. The mixture was stirred under H2 (50 psi) at 50°C for 12 hr. The reaction mixture was filtered, and the filtrate was concentrated in vacuo to give the title compound as a yellow oil (5 g, 15.00 mmol, 75% yield, 88% purity). LCMS: [M+H] + = 294.1. [00702] (S)-2-Chloro-5-fluoro-6-((3-(3-hydroxy-3-methylbutyl)-1-(2-h ydroxypropyl)-2-oxo- 2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile [00703] To a solution of (S)-5-amino-3-(3-hydroxy-3-methylbutyl)-1-(2-hydroxypropyl)- 1H- benzo[d]imidazol-2(3H)-one (1 g, 3.41 mmol) and 2,6-dichloro-5-fluoronicotinonitrile (651.04 mg, 3.41 mmol) in DMF (10 mL) was added DIEA (881.12 mg, 6.82 mmol, 1.19 mL). The mixture was stirred at 100°C for 1 hr. The reaction mixture was treated with H 2 O (50 mL), forming a precipitate which was filtered and the solid was washed with solvent (Petroleum ether/Ethyl acetate =2:1, 50 mL). The filter cake was collected and dried in vacuo to give the title compound as a yellow solid (1.3 g, 2.67 mmol, 78% yield, 92% purity). LCMS: [M+H] + = 448.1. [00704] 2-((3R,5S)-3-(1,3-Dioxoisoindolin-2-yl)-4,4-difluoro-5-methy lpiperidin-1-yl)-5-fluoro- 6-((3-(3-hydroxy-3-methylbutyl)-1-((S)-2-hydroxypropyl)-2-ox o-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile [00705] To a solution of (S)-2-chloro-5-fluoro-6-((3-(3-hydroxy-3-methylbutyl)-1-(2- hydroxypropyl)-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)am ino)nicotinonitrile (300 mg, 669.81 µmol) and 2-((3R,5S)-4,4-difluoro-5-methylpiperidin-3-yl)isoindoline-1 ,3-dione (187.73 mg, 669.81 µmol) in DMSO (3 mL) was added DIEA (432.84 mg, 3.35 mmol, 583.34 µL). The mixture was stirred at 130°C for 10 hr. The mixture (combined with another batch at 50 mg scale) was purified directly without further work-up. The residue was purified by prep-HPLC (column: Waters Xbridge Prep OBD C18150*40mm*10µm; mobile phase: [water (NH4HCO3)-ACN]; B%: 35%-65%, 8min) to give the title compound as a yellow solid (90 mg, 123.61 µmol, 18% yield, 95% purity). LCMS: [M+H] + = 692.3. [00706] 2-((3R,5S)-3-Amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-fl uoro-6-((3-(3-hydroxy-3- methylbutyl)-1-((S)-2-hydroxypropyl)-2-oxo-2,3-dihydro-1H-be nzo[d]imidazol-5- yl)amino)nicotinonitrile (90) [00707] To a solution of 2-((3R,5S)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluoro-5- methylpiperidin-1-yl)-5-fluoro-6-((3-(3-hydroxy-3-methylbuty l)-1-((S)-2-hydroxypropyl)-2-oxo- 2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile (70 mg, 101.20 µmol) in EtOH (3.5 mL) was added MeNH 2 (7.86 mg, 101.20 µmol, 3.5 mL, 40% purity) (40% in water) under N 2 . The mixture was stirred at 70°C for 1 hr. The mixture (combined with another batch at 20 mg scale) was concentrated in vacuo. The residue was purified by prep-HPLC (column: Phenomenex C1875*30mm*3µm; mobile phase: [water (NH 4 HCO 3 )-ACN]; B%: 35%-65%, 8min) to give the title compound as a white solid (20 mg, 35.35 µmol, 35% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.44 (s, 1H), 7.81 (d, J = 10.85 Hz, 1H), 7.40 (d, J = 1.91 Hz, 1H), 7.34 (dd, J = 8.46, 1.91 Hz, 1H), 7.15 (d, J = 8.46 Hz, 1H), 4.86 (d, J = 5.01 Hz, 1H), 4.51 (s, 1H), 4.11 (d, J = 12.16 Hz, 1H), 3.93 - 4.01 (m, 2H), 3.89 (dd, J = 10.55, 6.62 Hz, 2H), 3.71 (dd, J = 5.84, 2.03 Hz, 2H), 2.88 - 3.02 (m, 1H), 2.69 - 2.87 (m, 2H), 2.03 - 2.19 (m, 1H), 1.70 (t, J = 8.05 Hz, 4H), 1.16 (d, J = 2.62 Hz, 6H), 1.06 (d, J = 6.20 Hz, 3H), 0.90 (d, J = 6.68 Hz, 3H).
[00708] (R)-1-((2-Amino-4-nitrophenyl)amino)propan-2-ol [00709] A mixture of 2-fluoro-5-nitro-aniline (10 g, 64.06 mmol) and (R)-1-aminopropan-2-ol (19.25 g, 256.24 mmol, 20.17 mL) in NMP (100 mL) was stirred at 100°C for 12 hr. The reaction mixture was treated with H2O (300 mL), forming a precipitate which was filtered and the solid was washed with solvent (EtOAc:PE = 1:2, 500 mL), the filter cake was collected and dried in vacuo to give the title compound as a yellow solid (12 g, 55.68 mmol, 87% yield, 98% purity). LCMS: [M+H] + = 212.3. [00710] (R)-1-(2-Hydroxypropyl)-5-nitro-1H-benzo[d]imidazol-2(3H)-on e [00711] To a solution of (R)-1-(2-amino-4-nitro-anilino)propan-2-ol (10 g, 47.34 mmol) in ACN (100 mL) was added DSC (12.13 g, 47.34 mmol) followed with NMP (10 mL). The reaction mixture was stirred at 20°C for 12 hr. The reaction mixture was filtered and then the solid was washed with (PE:EtOAc = 1:1, 80 mL), collected and dried in vacuo to give the title compound as a yellow solid (9.3 g, 38.81 mmol, 82% yield, 99% purity). 1 H NMR (400 MHz, DMSO-d 6 ) δ 11.40 (s, 1H), 7.99 (dd, J = 2.4, 8 Hz, 1H), 7.74 (d, J = 2.4 Hz, 1H), 7.35 (d, J = 8.8 Hz, 1H), 4.91 (d, J = 4.8 Hz, 1H), 4.02 - 3.91 (m, 1H), 3.81 - 3.69 (m, 2H), 1.10 (d, J = 6.4 Hz, 3H). [00712] (R)-3-(3-Hydroxy-3-methylbutyl)-1-(2-hydroxypropyl)-5-nitro- 1H-benzo[d]imidazol- 2(3H)-one [00713] To a mixture of 3-[(R)-2-hydroxypropyl]-6-nitro-1H-benzimidazol-2-one (4.3 g, 18.13 mmol) and (3-hydroxy-3-methyl-butyl) 4-methylbenzenesulfonate (7.49 g, 29.00 mmol) in DMF (50 mL) was added Cs2CO3 (11.81 g, 36.25 mmol) and stirred at 120°C for 2 hr. The reaction mixture was treated with H 2 O (80 mL) and extracted with EtOAc (100 mL x3), then the combined organic phase was washed with brine (150 mL), dried with anhydrous Na2SO4, filtered and concentrated in vacuo to give the title compound as a yellow oil (6.5 g, crude). 1 H NMR (400 MHz, CDCl 3 ) δ 8.06 (dd, J = 2.0, 8.8 Hz, 1H), 7.92 (d, J = 2.0 Hz, 1H), 7.19 (d, J = 8.8 Hz, 1H), 4.26 - 4.17 (m, 1H), 4.14 - 4.06 (m, 2H), 4.02 - 3.93 (m, 1H), 3.91 - 3.82 (m, 1H), 2.51 (s, 1H), 1.91 (t, J = 7.6 Hz, 2H), 1.48 (s, 1H), 1.30 (s, 6H), 1.28 (d, J = 6.0 Hz, 3H). [00714] (R)-5-Amino-3-(3-hydroxy-3-methylbutyl)-1-(2-hydroxypropyl)- 1H-benzo[d]imidazol- 2(3H)-one [00715] To a solution of 3-(3-hydroxy-3-methyl-butyl)-1-[(R)-2-hydroxypropyl]-5-nitro - benzimidazol-2-one (6.5 g, 20.10 mmol) in DMF (100 mL) was added Pd/C (3 g, 21.65 mmol, 10% purity) under Ar. The flask was degassed under vacuum and purged with H 2 for three times. The mixture was stirred under H2 (50 psi) at 50°C for 12 hours. The reaction mixture was filtered, and the filtrate was concentrated in vacuo and purified by column chromatography (SiO2, EtOAc/EtOH = 1/0 to 3/1) to give the title compound as a yellow solid (3.6 g, 11.54 mmol, 57% yield, 94% purity). LCMS: [M+H] + = 294.1. [00716] (R)-2-Chloro-5-fluoro-6-((3-(3-hydroxy-3-methylbutyl)-1-(2-h ydroxypropyl)-2-oxo- 2,3-dihydro-1H-benzo[d]imidazol-5-yl)amino)nicotinonitrile [00717] To a mixture of 5-amino-3-(3-hydroxy-3-methyl-butyl)-1-[(R)-2- hydroxypropyl]benzimidazol-2-one (1 g, 3.41 mmol) and 2,6-dichloro-5-fluoro-pyridine-3- carbonitrile (651.04 mg, 3.41 mmol) in DMF (10 mL) was added DIPEA (881.12 mg, 6.82 mmol, 1.19 mL), and the reaction mixture was stirred at 100°C for 1 hr. The reaction mixture was treated with H2O (20 mL), forming a precipitate which was filtered and the solid was washed with (PE:EtOAc = 2:1, 40 mL). The solid was dried in vacuo to give the title compound as a brownish red solid (1.3 g, 2.61 mmol, 77% yield, 90% purity). LCMS: [M+H] + = 448.2. [00718] 2-((3R,5S)-3-(1,3-Dioxoisoindolin-2-yl)-4,4-difluoro-5-methy lpiperidin-1-yl)-5-fluoro- 6-((3-(3-hydroxy-3-methylbutyl)-1-((R)-2-hydroxypropyl)-2-ox o-2,3-dihydro-1H- benzo[d]imidazol-5-yl)amino)nicotinonitrile [00719] To a mixture of 2-chloro-5-fluoro-6-[[3-(3-hydroxy-3-methyl-butyl)-1-[(R)-2- hydroxypropyl]-2-oxo-benzimidazol-5-yl]amino]pyridine-3-carb onitrile (319.61 mg, 713.60 µmol) and 2-[(3R,5S)-4,4-difluoro-5-methyl-3-piperidyl]isoindoline-1,3 -dione (200 mg, 713.60 µmol) in DMSO (3 mL) was added DIPEA (184.46 mg, 1.43 mmol, 248.59 µL), and the reaction mixture was stirred at 130°C for 10 hr. The reaction mixture was filtered (combined with one batch of 100 mg scale and another batch of 200 mg scale) and was purified by prep-HPLC (column: C18 (250*50mm*10µm); mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 40%-65%, 10min) to give the title compound as a yellow solid (250 mg , 90% purity). LCMS: [M+H] + = 692.3. [00720] 2-((3R,5S)-3-Amino-4,4-difluoro-5-methylpiperidin-1-yl)-5-fl uoro-6-((3-(3-hydroxy-3- methylbutyl)-1-((R)-2-hydroxypropyl)-2-oxo-2,3-dihydro-1H-be nzo[d]imidazol-5- yl)amino)nicotinonitrile (91) [00721] To a solution of 2-[(3R,5S)-3-(1,3-dioxoisoindolin-2-yl)-4,4-difluoro-5-methy l-1- piperidyl]-5-fluoro-6-[[3-(3-hydroxy-3-methyl-butyl)-1-[(R)- 2-hydroxypropyl]-2-oxo- benzimidazol-5-yl]amino]pyridine-3-carbonitrile (100 mg, 144.57 µmol) in EtOH (7.5 mL) was added MeNH2 (11.22 mg, 144.57 µmol, 7.5 mL, 40% purity) and was stirred at 70°C for 1 hr. The reaction mixture was concentrated in vacuo and then purified by prep-HPLC (column: Phenomenex C18 75*30mm*3µm; mobile phase: [water(NH 4 HCO 3 )-ACN]; B%: 15%-60%, 8min) to give the title compound as a white solid (30 mg, 53.42 µmol, 37% yield, 100% purity). 1 H NMR (400 MHz, DMSO-d6) δ 9.44 (s, 1H), 7.81 (d, J = 10.8 Hz, 1H), 7.40 (d, J = 2.0 Hz, 1H), 7.33 (dd, J = 1.6, 8.8 Hz, 1H), 7.15 (d, J = 8.4 Hz, 1H), 4.86 (d, J = 5.2 Hz, 1H), 4.52 (s, 1H), 4.12 (d, J = 12.0 Hz, 1H), 4.03 - 3.85 (m, 4H), 3.75 - 3.66 (m, 2H), 3.00 - 2.87 (m, 1H), 2.87 - 2.79 (m, 1H), 2.74 (t, J = 12.4 Hz, 1H), 2.22 - 2.02 (m, 1H), 1.80 - 1.62 (m, 4H), 1.16 (d, J = 2.0 Hz, 6H), 1.06 (d, J = 6.4 Hz, 3H), 0.89 (d, J = 6.4 Hz, 3H). [00722] The absolute configurations of compounds 90 & 91 were randomly assigned based on the amino group and methyl group being in cis-conformation. [00723] Example 45: Degradation Activity Table 1. Degradation activity of compounds Compound # HiBiT SU-DHL-4 DC 50 (µM) 1 0.006 2 0.006 3 0.003 6 0.013 7 0.005 9 >0.4 11 0.002 14 & 15 (tested as mixture) 0.060 18 0.005 24 0.030 25 >0.4 35 >0.4 36 >0.4 37 0.062 38 >0.4 39 0.041 40 >0.4 41 0.010 42 0.071 43 0.010 44 0.070 45 0.003 46 0.006 47 0.011 48 0.031 49 >0.4 50 0.028 51 >0.4 52 0.017 53 >0.4 54 0.038 55 0.033 56 >0.4 57 >0.4 58 >0.4 59 0.048 60 >0.4 61 >0.4 62 0.008 63 0.039 64 0.007 65 0.056 66 0.006 67 0.004 68 0.004 69 0.015 70 >0.4 71 >0.4 72 0.002 73 0.009 74 0.022 75 >0.4 76 0.004 77 0.004 78 >0.4 79 0.012 80 >0.4 81 0.031 82 0.033 83 >0.4 84 >0.4 85 >0.4 86 0.083 87 0.101 88 0.080 89 0.102 90 0.073 91 0.118 HiBiT protocol [00724] DC 50 (concentration to reach 50% degradation) values were determined from a cellular degradation assay (HiBiT, Promega™) in Su-DHL-4 cells (Table 1). Endogenous BCL6 was tagged with the 11-amino acid SmBiT through CRISPR/Cas9 gene editing and single cell clone selection. After 24 hours of compound treatment, cells were lysed and incubated with LgBiT protein to reconstitute intact nanoluciferase. Substrate was then added and relative luciferase units were measured. Degradation levels for each treatment were taken as a percentage compared to the control, 100% DMSO (Prism). [00725] Example 46: Synergistic effects of BCL6 degradation and EZH2 inhibition [00726] Enhancer of zeste homolog 2 (EZH2) is a member of the polycomb repressive complex 2 (PRC2) that methylates histone 3 lysine 27, a mark that is associated with gene repression. EZH2 expression is up-regulated in both normal germinal center B cell development and in the germinal center (GC) subtype of B cell lymphomas, much like BCL6 (Caganova et al., J. Clin. Invest. 123(12):5009-5022 (2013); Beguelin et al., Cancer Cell 23(5):677-692 (2013)). Cooperation between BCL6 and PRC2 in negatively regulating transcription has been described in both normal B-cell development and lymphomagenesis (Beguelin et al., Cancer Cell 30(2):197-213 (2016)). Su-DHL-4 cells were treated with various concentrations of Tazemetostat (Taz) or Lirametostat (Lira) (ranging from 10 µM to 5 nM). After 48 hours, the cells were treated with various concentrations of compound 1 (ranging from 50 nM to 2 nM). Cell proliferation was monitored via CellTiter-Glo® assay (Promega™) five days after the treatment of compound 1. The anti- proliferative effects were plotted for both Taz (FIG.1A) and Lira treatments (FIG.1B). The excess over Bliss (eob) scores were calculated over a range of at least three concentrations (FIG.1C-FIG. 1D), and a significant synergistic effect (eob > 1, average synergy score of over 10, SynergyFinder (Ianevski et al., Bioinformatics 33(15):2413-2415 (2017)), was observed over most of the concentration range. Since anti-proliferation effect was only observed at DC 99 of BCL6 degrader treatment in single-compound experiment, the dose reduction at 60% of growth inhibition (GI60) was calculated through the addition of the two EZH2 inhibitors. BCL6 degraders for both Taz and Lira treatments at 480 nM reduced the BCL6 degrader dose requirement to achieve GI 60 by around 4.3 fold (FIG. 1E). Taken together, these results demonstrated that EZH2 inhibition exerted synergistic anti-proliferative effects with BCL6 degraders. [00727] Example 47: Proliferation protocol [00728] To ensure HiBiT signal decrease was due to BCL6 degradation and not from dying cells, CellTiter-Glo® (CTG, Promega™) was performed on the same number of cells that were treated for 24 hours with BCL6 degraders. To study the anti-proliferative effects of BCL6 degraders and its synergistic effect with EZH2 inhibitors, Su-DHL-4 and other DLBCL cells were treated with the compounds at DC99, DC75, DC50, or 1 µM followed by 5 days of culture, at which point CTG values and/or Caspase3/7 activities were measured as percent DMSO treated. [00729] All patent publications and non-patent publications are indicative of the level of skill of those skilled in the art to which this invention pertains. All these publications are herein incorporated by reference to the same extent as if each individual publication were specifically and individually indicated as being incorporated by reference. [00730] Although the invention herein has been described with reference to particular embodiments, it is to be understood that these embodiments are merely illustrative of the principles and applications of the present invention. It is therefore to be understood that numerous modifications may be made to the illustrative embodiments and that other arrangements may be devised without departing from the spirit and scope of the present invention as defined by the appended claims.
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