Title:
METHOD FOR SELECTING PROMOTER THAT FUNCTIONS IN ORGANELLE
Document Type and Number:
WIPO Patent Application WO/2020/184402
Kind Code:
A1
Abstract:
The present invention provides a method for selecting a promoter that functions in organelle, the method including a step (1) for preparing sequence information obtained from RNA sequence analysis; a step (2) for mapping the sequence information prepared in step (1) onto organelle DNA sequence; a step (3) for determining, based on the mapping information obtained in step (2), the amount of change in the RNA expression in individual regions; a step (4) for selecting regions in which the amount of change obtained in the step (3) is within the range of a reference value that is predetermined; and a step (5) for determining a region, from among said selected regions, that is appropriate as a promoter that functions in organelle.
Inventors:
KATAYAMA KENTA (JP)
NISHIDA KEIJI (JP)
NISHIDA KEIJI (JP)
Application Number:
PCT/JP2020/009553
Publication Date:
September 17, 2020
Filing Date:
March 06, 2020
Export Citation:
Assignee:
UNIV KOBE NAT UNIV CORP (JP)
International Classes:
A01H1/00; C12N5/10; C12N15/82; C12Q1/6869
Domestic Patent References:
| WO2013077420A1 | 2013-05-30 |
Foreign References:
| JP2019042535A | 2019-03-22 |
Other References:
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MUSTAFA MALIK GHULAM; OUAFA ZGHIDI-ABOUZID; EMELINE LAMBERT; SILVA LERBS-MACHE; LIVIA MERENDINO: "Transcriptional organization of the large and the small ATP synthase operons, atpI/H/F/A and atpB/E, in Arabidopsis thaliana chloroplasts", PLANT MOLECULAR BIOLOGY, vol. 79, no. 3, 19 April 2012 (2012-04-19), pages 259 - 272, XP035054356
GERASYMENKO, I. M. ET AL.: "Comparison of effectiveness of 50-regulatory sequences in transplastomic tobacco chloroplasts", TRANSGENIC RES., vol. 26, 2017, pages 65 - 75, XP036137277, DOI: 10.1007/s11248-016-9980-2
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YANXIN ZHAO, CAI MANJUN, ZHANG XIAOBO, LI YURONG, ZHANG JIANHUA, ZHAO HAILIANG, KONG FEI, ZHENG YONGLIAN, QIU FAZHAN: "Genome-Wide Identification, Evolution and Expression Analysis of mTERF Gene Family in Maize", PLOS ONE, vol. 9, no. 4, 9 April 2014 (2014-04-09), pages e94126, XP055738586
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SIDOROV ET AL., PLANT J., vol. 19, 1999, pages 209
RUF, S. ET AL., NATURE BIOTECHNOL., vol. 19, 2001, pages 870
HOU ET AL., TRANSGENIC RES., vol. 12, 2003, pages 111
HAJDUKIEWICZ P. ET AL., PLANT MOL BIOL., vol. 25, 1994, pages 989 - 94
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CHUAH J.A. ET AL., SCIENTIFIC REPORTS, vol. 5, 2015, pages 7751
SCIENCE, vol. 122, 1952, pages 501
"Dulbecco's Modified Eagle's Medium (DMEM", VIROLOGY, vol. 8, 1959, pages 396
THE JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, vol. 199, 1967, pages 519
PROCEEDING OF THE SOCIETY FOR THE BIOLOGICAL MEDICINE, vol. 73, 1950, pages 1
PROC. NATL. ACAD. SCI. USA, vol. 77, 1980, pages 4505
PROC. NATL. ACAD. SCI. USA, vol. 81, 1984, pages 5330
NATURE, vol. 195, 1962, pages 788
TOKI S. ET AL., PLANT PHYSIOL., vol. 100, no. 3, 1992, pages 1503 - 1507
CHRISTOU P. ET AL., BIO/TECHNOLOGY, vol. 9, 1991, pages 957 - 962
HIEI Y. ET AL., PLANT J., vol. 6, 1994, pages 271 - 282
PAL MALIGATARINEE TUNGSUCHAT-HUNG, METHODS MOL BIOL., vol. 1132, 2014, pages 205 - 220
MUSTAFA MALIK GHULAM; OUAFA ZGHIDI-ABOUZID; EMELINE LAMBERT; SILVA LERBS-MACHE; LIVIA MERENDINO: "Transcriptional organization of the large and the small ATP synthase operons, atpI/H/F/A and atpB/E, in Arabidopsis thaliana chloroplasts", PLANT MOLECULAR BIOLOGY, vol. 79, no. 3, 19 April 2012 (2012-04-19), pages 259 - 272, XP035054356
GERASYMENKO, I. M. ET AL.: "Comparison of effectiveness of 50-regulatory sequences in transplastomic tobacco chloroplasts", TRANSGENIC RES., vol. 26, 2017, pages 65 - 75, XP036137277, DOI: 10.1007/s11248-016-9980-2
CHING-CHIH TSENG, CHIH-JEN LEE, YI-TING CHUNG, TZU-YING SUNG, MING-HSIUN HSIEH: "Differential regulation of Arabidopsis plastid gene expression and RNA editing in non-photosynthetic tissues", PLANT MOLECULAR BIOLOGY, vol. 82, no. 4-5, 6 May 2013 (2013-05-06) - July 2013 (2013-07-01), pages 375 - 392, XP055738580
MANDE XUE, YAN LONG, ZHIQIANG ZHAO, GEGE HUANG, KE HUANG, TIANBAO ZHANG, YING JIANG, QIANHUA YUAN, XINWU PEI: "Isolation and Characterization of a Green-Tissue Promoter from Common Wild Rice (Oryza rufipogon Griff.", INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, vol. 19, no. 7, 10 July 2018 (2018-07-10), pages 2009, XP055738582
ZHANG NING; MCHALE LEAH K; FINER JOHN J: "Isolation and characterization of ''GmScream'' promoters that regulate highly expressing soybean (Glycine max Merr.) genes", PLANT SCIENCE, vol. 241, 21 October 2015 (2015-10-21) - December 2015 (2015-12-01), pages 189 - 198, XP029357143
YANXIN ZHAO, CAI MANJUN, ZHANG XIAOBO, LI YURONG, ZHANG JIANHUA, ZHAO HAILIANG, KONG FEI, ZHENG YONGLIAN, QIU FAZHAN: "Genome-Wide Identification, Evolution and Expression Analysis of mTERF Gene Family in Maize", PLOS ONE, vol. 9, no. 4, 9 April 2014 (2014-04-09), pages e94126, XP055738586
DAY, A.GOLDSCHMIDT-CLERMONT, M., PLANT BIOTECHNOL. J., vol. 9, 2011, pages 540
MORTAZAVI A. ET AL., NAT METHODS, vol. 5, no. 7, 2008, pages 621 - 628
DI C. ET AL., PLANT J., vol. 80, no. 5, 2014, pages 848 - 861
"GenBank", Database accession no. NC 001284.2
JAVIS P.LOPEZ-JUEZ E., NAT. REV. MOL. CELL BIOLO., vol. 14, 2013, pages 787 - 802
SVAB ET AL., PROC. NAL. ACAD. SCI. USA, vol. 87, 1990, pages 8526
SIKDAR ET AL., PLANT CELL REP., vol. 18, 1998, pages 20
SIDOROV ET AL., PLANT J., vol. 19, 1999, pages 209
RUF, S. ET AL., NATURE BIOTECHNOL., vol. 19, 2001, pages 870
HOU ET AL., TRANSGENIC RES., vol. 12, 2003, pages 111
HAJDUKIEWICZ P. ET AL., PLANT MOL BIOL., vol. 25, 1994, pages 989 - 94
SVAB Z. ET AL., PROC NATL ACAD SCI USA, vol. 87, 1990, pages 8526 - 8530
GOLDS T. ET AL., BIO TECHNOL., vol. 11, 1992, pages 95 - 97
CHUAH J.A. ET AL., SCIENTIFIC REPORTS, vol. 5, 2015, pages 7751
SCIENCE, vol. 122, 1952, pages 501
"Dulbecco's Modified Eagle's Medium (DMEM", VIROLOGY, vol. 8, 1959, pages 396
THE JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, vol. 199, 1967, pages 519
PROCEEDING OF THE SOCIETY FOR THE BIOLOGICAL MEDICINE, vol. 73, 1950, pages 1
PROC. NATL. ACAD. SCI. USA, vol. 77, 1980, pages 4505
PROC. NATL. ACAD. SCI. USA, vol. 81, 1984, pages 5330
NATURE, vol. 195, 1962, pages 788
TOKI S. ET AL., PLANT PHYSIOL., vol. 100, no. 3, 1992, pages 1503 - 1507
CHRISTOU P. ET AL., BIO/TECHNOLOGY, vol. 9, 1991, pages 957 - 962
HIEI Y. ET AL., PLANT J., vol. 6, 1994, pages 271 - 282
PAL MALIGATARINEE TUNGSUCHAT-HUNG, METHODS MOL BIOL., vol. 1132, 2014, pages 205 - 220
Attorney, Agent or Firm:
TAKASHIMA, Hajime (JP)
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