LAPORTE MATTHEW G (US)
DENG YIJUN (US)
RIPPIN SUSAN R (US)
CONDON STEPHEN M (US)
LAPORTE MATTHEW G (US)
DENG YIJUN (US)
RIPPIN SUSAN R (US)
WO2006020060A2 | 2006-02-23 | |||
WO2006091972A2 | 2006-08-31 | |||
WO2007021825A2 | 2007-02-22 |
US20050234042A1 | 2005-10-20 |
What is claimed is;
1. The compound of Formula I:
wherein
Z j and Z 2 are each independently CH or N;
R 1 is H or optionally substituted hydroxy, alkyl,
cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
R 2 and R 2 ' are each independently H or optionally
substituted alkyl, cycloalkyl, or heterocycloalkyl; or when
R 2 ' is H then R 7 and R 1 can together form an aziridine or
azetidine ring;
R 1 and R 4 are each independently H or optionally
substituted alkyl, cycloalkyl, heterocycloalkyl, aryl, or
heteroaryl; or, R 1 and R 4 are each carbon and are linked by
a covalent bond or by an optionally-substituted alkylene or
alkenylene group of 1 to 8 carbon atoms where one to three R 5 and R 6 are each independently H or optionally
substituted hydroxy, alkyl, cycloalkyl, heterocycloalkyl,
aryl , or heteroaryl; or R 5 and R 6 are each carbon and are
linked by a covalent bond or by an optionally-substituted
alkylene or alkenylene group of 1 to 8 carbon atoms where
one to three carbon atoms can be replaced by N, O, S(O) n , or
C=O;
M is a bond or an optionally substituted alkylene
group of 1 to 5 carbon atoms ;
G is a bond, a heteroatom, -(C=O)-, -S(O) n -, -NR 9 -, -
NCOR 0 -, or -NS(O) n R 6 -, where R 3 is lower alkyl, optionally-
substituted lower alkyl or C ^ a cycloalkyl;
R 7 is optionally substituted alkyl, cycloalkyl,
heterocycloalkyl, aryl, or heteroaryl wherein R 7 is
substituted with -Ll-R 10 and is optionally further
substituted;
Ll is a covalent bond or optionally substituted C 1 . β
alkylene;
R 10 is an optionally substituted 5-, 6-, or 7-merabered
heterocycloalkyl with at least one N or 0 atom in the ring
or R 10 is heteroaryl with at least one N atom in the ring,- each n can be the same or different and is 0, 1, or 2;
or a pharmaceutically acceptable salt thereof.
2. The compound of claim 1 wherein when Z 1 is N and Z 2 is
CH, then at least one of the following is true:
(i) R b and R 6 together are not both carbon atoms linked
by a single covalent bond;
(ii) R b and R 6 are both carbon atoms linked by a single
covalent bond and R 5 , is disubstituted;
(iii) R 5 and R 6 are both carbon atoms linked by a
single covalent bond and R 6 is mono- or disubstituted;
(iv) R b and R 6 are both carbon atoms linked by a single
covalent bond and R 1 and R 4 are both carbon atoms linked by
a covalent bond or by an optionally-substituted alkylene or
alkenylene group of 1 to 8 carbon atoms where one to three
carbon atoms can be replaced by N, O, S(O) n , or C=O.
3. The compound of claim 1 wherein
M is optionally-substituted C 1 -C 5 alkylene;
G is a bond;
R 7 is aryl or heteroaryl; L 1 is a covalent bond or C 1 -C 4 alkylene, alkenylene, or
alkynylene ;
R 10 is a tetrahydrofuranyl or tetrahydropyranyl moiety
optionally substituted with hydroxy, lower alkyl, lower
alkoxy, or optionally-substituted lower alkoxy selected
from arylalkyloxy, alkylcarbonyloxy, arylcarbonyloxy,
acetyloxy; or, R 10 is an optionally-substituted nitrogen-
containing 5- to 7-membered heteroaryl or heterocycloalkyl
group .
4. The compound of claim 3 wherein
M is C 1 -C 3 alkylene, but not alkenylene or alkynylene,
optionally-substituted with lower alkyl;
L 1 is a single covalent bond;
R 10 is tetrahydrofuranyl or tetrahydropyranyl
substituted with at least one hydroxy or acetyloxy group,-
5. The compound of claim 3 wherein
M is C 1 -C 3 alkylene, but not alkenylene or alkynylene,
optionally-substituted with lower alkyl;
L 1 is a single covalent bond; R 10 is a 5- to 7-membered heteroaryl or
heterocycloalkyl group having a single nitrogen atom in the
ring and no additional heteroatoms ,
6. The compound of claim 1 wherein R 1 is H, methyl, allyl,
propargyl, ethyl, cycloalkyl, hydroxyethyl or
cycloalkylmethyl .
7. The compound of claim 1 wherein R 2 and R 2 1 are
independently H, methyl, fluoromethyl, difluoromethyl ,
ethyl, hydroxyethyl, fluoroethyl, and cycloalkyl.
8. The compound of claim 1 wherein R, and R 4 are
independently H, methyl, ethyl, isopropyl, isobutyl, sec-
butyl, tert-butyl, cycloalkyl, heterocycloalkyl , aryl, or
heteroaryl, optionally-substituted with hydroxy1 , mercapto,
sulfonyl, alkylsulfonyl, halogen, pseudohalogen, amino,
carboxyl, alkyl, haloalky, pseudohaloalkyl , alkoxy, or
alkylthio, or R 3 and R 4 are carbon atoms and are linked by a
covalent bond or by an optionally- substituted alkylene or
alkenylene group of 1 to 3 carbon atoms of which 1 or more
atoms can be replaced by N, O, S(O) n , or C=O.
9. The compound of claim 1 wherein R 5 and R 6 are
independently optionally substituted lower alkyl or C 3 -C 3 lower alkσxy, or R 5 and R 6 are carbon atoms and are linked
by a covalent bond or by an optionally-substituted alkylene
or alkenylene group of 1 to 3 carbon atoms of which 1 or
more atoms can be replaced by N, 0, S(O) n , or C=O.
10. The compound of claim 1 wherein
R 1 is H, methyl, allyl, propargyl , ethyl, cycloalkyl,
hydroxyethyl or cycloalkylmethyl;
R 2 and R ? ' are independently H, methyl, fluoromethyl,
difluoromethyl , ethyl, hydroxyethyl, fluoroethyl, and
cycloalkyl ;
R, and R 4 are independently optionally substituted
lower alkyl or C 3 -C 6 cycloalkyl wherein the optional
substituents are hydroxy or lower alkoxy, or R 3 and R 4 are
carbon atoms and are linked by a covalent bond or by an
optionally- substituted alkylene or alkenylene group of 1 to
3 carbon atoms of which 1 or more atoms can be replaced by
N, O, S(O) n , or C-O;
R 5 and R 6 are independently optionally substituted
lower alkyl or C^-C 8 cycloalkyl wherein the optional
substituents are hydroxy or lower alkoxy, or R f and R 6 are
carbon atoms and are linked by a covalent bond or by an optionally-substituted alkylene or alkenylene group of I to
3 carbon atoms of which 1 or more atoms can be replaced by
N, 0, S(O) „, or C=O;
M is C 1 -C j alkylene optionally-substituted with lower
alkyl.
11. The compound of claim 1 wherein
R 1 is H, methyl, allyl, propargyl , ethyl, cycloalkyl,
hydroxy ethyl or cycloalkylmethyl;
R 2 and R 2 ' are independently H, methyl, fluoromethyl,
difluoromethyl, ethyl, hydroxy ethyl, fluoroethyl, and
cycloalkyl ;
R 3 and R 4 are linked by a covalent bond or by an
optionally-substituted alkylene or alkenylene group of 1 to
3 carbon atoms of which 1 or more atoms can be replaced by
N, 0, S(O) 1 ., or C=O;
R t and R 6 are independently H or optionally substituted
lower alkyl or C 3 -C 8 cycloalkyl wherein the optional
substituents are hydroxy or lower alkoxy, or R k and R 6 are
carbon atoms and are linked by a covalent bond or by an
optionally- substituted alkylene or alkenylene group of 1 to 8 carbon atoms where one to three carbon atoms can be
replaced by W, O, S(O) n , or C=O;
M is C 1 -C 3 alkylene optionally- substituted with lower
alkyl.
12. The compound of claim 1 wherein
R 7 is IIb or IIb:
L 1 is a single covalent bond
X is -N-, -C=C(R 16 )-, -N=C- or -C(O)N-;
Y is -C-, -N-, or -N + -; such that, When Y is -C- then R 9 , R n , R 17 , R 13 , R 1 ,, R 15 , and R 16 are,
independently, -H, halogen, or optionally substituted
alkyl, cycloalkyl , aryl , heteroaryl, hydroxy, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino,
alkoxyalkyl, sulfonate, aryloxy, heteroaryloxy , acyl ,
acetyl, carboxylate, sulfonate, sulfone, imine, or oxime;
provided that when X is -N- or -C(O)-N-, -L 1 -R 10 is bound to
the -N- atom; and, when X is -C=C(R 16 )- or -N=C-, -L 1 -R 10 is
bound to the -C= atom ; and
When Y is -N- or -N + -, then R 11 is absent or -0 " , and
R 9 , R 12 , R 13 , R 14 , R JS , and R 16 are, independently, -H, halogen,
or optionally substituted alkyl, cycloalkyl,
heterocycloalkyl , aryl, heteroaryl, hydroxyl , alkoxy,
polyalkylether, amino, alkylamino, dialkylamino,
alkoxyalkyl, sulfonate, aryloxy, heteroaryloxy, acyl,
acetyl, carboxylate, sulfonate, sulfone, imine, or oxime;
provided that when X is -N- or -C(O)-N-, -L 1 -R 10 is bound to
the -N- atom; and, when X is -C=C(R 16 )- or -N=C-, -L 1 -R 10 is
bound to the -C= atom;
13. The compound of claim 1 having the formula (III) :
Y is -C-, -N-, or -N + -; such that,
A is a single or double bond;
When A is a single bond and Y is -C- then R 9 a, R 9 b, R n ,
R 12 , R 1J , R 14 , and R 17 are, independently, -H, halogen, or
optionally substituted alkyl, cycloalkyl, heterocycloalkyl,
aryl, heteroaryl, hydroxy, alkoxy, polyalkylether, amino,
alkylamino, dialkylamino, alkoxyalkyl, sulfonate, aryloxy,
heteroaryloxy, acyl , acetyl, carboxylate, sulfonate,
sulfone, imine, or oxime;
When A is a single bond and Y is -N- or -N + -, then R 11
is absent or -O " , and R 9 a, R 9 b, R 12 , R 13 , R 14 , and R 1 , are,
independently, -H, halogen, or optionally substituted
alkyl, cycloalkyl, heterocycloalkyl, aryl, heteroaryl,
hydroxy, alkoxy, polyalkylether, amino, alkylamino,
dialkylamino, alkoxyalkyl, sulfonate, aryloxy,
heteroarylσxy, acyl, acetyl, carboxylate, sulfonate, When A is a double bond and Y is -C- then R,b and R 17
are absent; and R 9 a, R 11 , R 12 , R 13 , and R 14 are, independently,
~H, halogen, or optionally substituted alkyl, cycloalkyl,
heterocycloalkyl, aryl , heteroaryl, hydroxy, alkoxy,
polyalkylether , amino, alkylamino, dialkylamino,
alkoxyalkyl, sulfonate, aryloxy, heteroaryloxy, acyl ,
acetyl, carboxylate, sulfonate, sulfone, imine, or oxime;
When A is a double bond and Y is -N- or -N + -, then R 9 b
and R 17 are absent; and R 11 is absent or -0 " , and R 9 a, R 12 ,
R 13 , and R 14 are, independently, -H, halogen, or optionally
substituted alkyl, cycloalkyl, heterocycloalkyl, aryl,
heteroaryl, hydroxyl , alkoxy, polyalkylether, amino,
alkylamino, dialkylamino, alkoxyalkyl, sulfonate, aryloxy,
heteroaryloxy, acyl, acetyl, or carboxylate, sulfonate,
sulfone, imine, or oxime;
14. The compound of claim 12 wherein
R, is Ha or lib;
X is -N-;
Y is -C-, -N-, or -N'-; such that
When Y is -C-, then R 9 , R 11 , R 17 , R u , R 14 and R 16 are,
independently, -H, halogen, or optionally substituted alkyl, cycloalkyl, heterocycloalkyl, aryl , heteroaryl,
hydroxyl, alkoxy, polyalkylether, amino, alkylamino,
dialkylamino, alkoxyalkyl, sulfonate, aryloxy or
heteroaryloxy;
When Y is -N-, then R 11 is absent, and R 9 , R 1 ,, R i3 , R 14
and R 1S are, independently, -H, halogen, or optionally
substituted alkyl, cycloalkyl, heterocycloalkyl, aryl,
heteroaryl, hydroxyl, alkoxy, polyalkylether, ammo,
alkylamino, dialkylamino, alkoxyalkyl, sulfonate, aryloxy
or heteroaryloxy;
When Y is -N + -, then RIl is -0 , and R 9 , R 12 , R 13 , R 14 and
R 15 are, independently, -H, halogen, or optionally
substituted alkyl, cycloalkyl, heterocycloalkyl, aryl,
heteroaryl, hydroxyl, alkoxy, polyalkylether, amino,
alkylamino, dialkylamino, alkoxyalkyl, sulfonate, aryloxy
or heteroaryloxy;
R ^ is methyl, ethyl, isopropyl, isobutyl, sec-butyl,
tert-butyl, cycloalkyl, heterocycloalkyl, aryl, or
heteroaryl, optionally-substituted with hydroxyl, mercapto,
halogen, pseudohalogen, amino, carboxyl, alkyl, haloalkyl ,
pseudohaloalkyl, alkoxy, or alkylthio; R, is -H, methyl, fluoromethyl , άifluoromethyl, ethyl,
fluoroethyl, and cycloalkyl;
R 2 ' is H;
R 1 is selected from H, methyl, allyl, propargyl, ethyl,
cycloalkyl, or cycloalkylmethyl ;
Z 1 is nitrogen;
Z 2 is -CH-;
R 4 is -H and R 5 and R 6 are both carbon atoms and
together form C 2 -C 4 alkylene; or, R 3 and R 4 are both carbon
atoms and together form C 2 -C 4 alkylene; or, both R 5 and R 6
together and R 9 and R 4 together both form C 2 -C 4 alkylene
groups ;
L 1 is a covalent bond.
15. The compound of claim 14 wherein
R 9 , R 11 , R 12 , R 13 , R 14 and R 18 are, independently, -H, -
halogen, or optionally- substituted lower alkyl;
R, is optionally-substituted lower alkyl, C 3 -C 8
cycloalkyl, or heterocycloalkyl wherein the optional
substituents are hydroxy, lower alkoxy, or lower alkyl; R 2 is optionally- substituted lower alkyl, C 3 -C 8
cycloalkyl, or heterocycloalkyl wherein the optional
sυbstituents are hydroxy, lower alkoxy, or lower alkyl;
R/ is H;
R 1 is -H or lower alkyl;
R 5 and R b are both carbon atoms and are linked by a
covalent bond;
R 4 is -H;
Z 2 is -CH- ;
R 10 is tetrahydropyran, tetrahydrofuran, D- or L-
fucose, D- or L-xylose, D- or L-galactose, or D- or L-
glucose, pyrrolidine, piperidine, perhydroazapine,
pyridine, pyrimidine, or pyrazine.
16. A compound selected from the group consisting of
Compounds A through U and Compounds HH through SS, as
follows, or a pharmaceutically acceptable salt thereof:
17. A compound of claim 1 having Formula IV:
wherein
Z 1 a, Z 2 a, Z 1 b, and Z 2 b are independently CH or N;
R 1 a and R 1 b are independently H or optionally
substituted hydroxyl, alkyl, cycloalkyl, heterocycloalkyl,
aryl, or heteroaryl; and when R 2 a' is H then R 2 a and R 1 a can
together form an aziridine or azetidine ring and when R 2 b'
is H then R 2 b and R 1 b can together form an aziridine or
azetidine ring;
R 2 a, R 2 a', R 2 b and R 2 b' are independently H or
optionally substituted alkyl, cycloalkyl, or
heterocycloalkyl; or when R 2 a' is H then R 2 a and R,a can together form an aziridine or azetidine ring and when R 2 b '
is H then R^b and R j b can together form an aziridine or
azetidine ring;
R 3 a, R 3 b, R 4 a and R 4 b are independently H or optionally
substituted alkyl, cycloalkyl, heterocycloalkyl , aryl, or
heteroaryl; or, R 4 a and R 3 a, or R 4 b and R 3 b, or both, are
carbon atoms linked by an optionally- substituted alkylene
or alkenylene group of 1 to 8 carbon atoms where one to
three carbon atoms can be replaced by N, 0, S(O) n , or C=O;
R 5 a, R 6 a, R 5 b, and R 6 b are independently H or optionally
substituted hydroxyl, alkyl, cycloalkyl, heterocycloalkyl ,
aryl, or heteroaryl; or R 5 a and R 6 a or R 5 b and R 6 b, or both,
are carbon atoms linked by an optionally- substituted
alkylene or alkenylene group of 1 to 8 carbon atoms where
one to three carbon atoms can be replaced by N, 0, S(O) n , or
C-O;
n can be the same or different in each usage and is 0,
1, or 2;
Xa is -0- , -H (La-R 10 a)-, -S-, optionally-substituted -
C(La-R 10 a)=CH-, -C(O)-O-, -C (0) -K (La-R I0 a) - , -N=C{La-R 10 a) - ; Xb is -O-, -N(Lb-R 10 b) -, -S-, optionally-substituted -
C(Lb-R lO b)=CH~, -C(O)-O-, -C{0) -N(Lb-R 10 b) - , -N=C {Lb-R 10 b) - ,
provided that if Xb is -0-, -S-, or -C(O)-O-, then Xa is -
N(La-R, o a}-, optionally-substituted -C (La-R 10 a) -CH-, -C(O)-
N(La-R ;o a) -, or -N=C (La-R 10 a) - , and if Xa is -0- , -S-, or -
C(O)-O-, then Xb is ~N(Lb-R 10 b) - , optionally-substituted -
C(Lb-R 10 b) =CH-, -C(O) -N(Lb~R 10 b) -, or -N=C (Lb-R 10 b) ~ ;
La and Lb are independently a covalent bond or C 1 -C 4
alkylene;
R 10 a and R 10 b are independently an optionally
substituted 5-, 6-, or 7-membered heterocycloalkyl with at
least one N or 0 atom in the ring or heteroaryl with at
least one N atom in the ring provided that one but not both
of R 10 a and R 10 b can be -H or absent;
Wa and Wb are together a Linker.
18. The compound of claim 17 wherein when Z x a is N and Z 2 a
is CH, and Z t b is N and Z ? b is CH, then at least one of the
following is true:
(i) R t a and R 6 a are not both carbon atoms linked by a
single covalent bond; (ii) R 5 a and R 6 a are both carbon atoms linked by a
single covalent bond and R^a is disubstituted;
(iii) R 5 a and R 6 a are both carbon atoms linked by a
single covalent bond and R 6 a is mono- or disubstituted;
(iv) R b a and R 6 a are both carbon atoms linked by a
single covalent bond and R 3 a and R^a are both carbon atoms
linked by a covalent bond or by an optionally-substituted
alkylene or alkenylene group of 1 to 8 carbon atoms where
one to three carbon atoms can be replaced by N, 0, S(O) n , or
C=O.
(v) R b a and R 6 a are both carbon atoms linked by a
single covalent bond and neither R 2 a nor R 2 a' are H.
19. The compound of claim 17 wherein R 3 a, R 4 a, Rjb,
and R 4 b are independently selected from H, methyl, ethyl,
isopropyl, isobutyl, sec-butyl, tert-butyl, cycloalkyl,
heterocycloalkyl, aryl, or heteroaryl, optionally-
substituted with hydroxyl, mercapto, sulfonyl,
alkylsulfonyl, halogen, pseudohalogen, amino, carboxyl,
alkyl, haloalky, pseudohaloalkyl , alkoxy, or alkylthio.
20. The compound of claim 17 wherein R,a and R 2 b
are independently selected from -H, methvl. fluoromethvl difluoromethyl, ethyl, fluoroethyl, hydroxyethyl , and
cycloalkyl .
21. The compound of claim 17 wherein R 1 a and R 1 b
are independently selected from H, methyl, allyl,
propargyl , ethyl, hydroxyethyl, cycloalkyl, or
cycloalkylmethyl .
22. The compound of claim 17 wherein R 3 a, R 4 a, R 3 b,
and R 4 b are independently optionally substituted lower alkyl
or C 3 -C 8 cycloalkyl wherein the optional substituents are
hydroxy or lower alkoxy.
23. The compound of claim 17 wherein Z 1 a and Z 1 b
are both N and Z 2 a and Z 2 b are both C and wherein R 5 a and
R 6 a, and R 5 b and R 6 b, are each carbon and are linked by a
covalent bond or by an optionally- substituted alkylene or
alkenylene group of 1 to 8 carbon atoms where one to three
carbon atoms can be replaced by N, 0, S(O) n , or C=O.
24. The compound of claim 17 wherein Z 1 a and Z 1 b
are both N and Z 2 a and Z 2 b are both C and wherein R 3 a and
R 4 a, and R 3 b and R 4 b, are each carbon and are linked by a covalent bond or by an optionally-substituted alkaline or alkenylene group of 1 to 8 carbon atoms where one to three
carbon atoms can be replaced by N, 0, S(O) n , or C=O.
25. The compound of claim 17 wherein Wa and Wb
together are a covalent bond or optionally substituted
alkylene, cyclσalkyl, or aryl, of 2 to 20 carbon atoms
where one or more carbon atoms can be replaced with N, 0,
or S(O) n ; and Xa and Xb are independently -0- , -S-, or -
C(O) -0-.
26. The compound of claim 17 wherein one of R 10 a
and R,,,b is -H or is absent.
27. A compound selected from the group consisting
of Compounds V through Z and AA through GG, as follows, or
a pharmaceutically acceptable salt thereof:
28. The compound of claim 2 having the formula
wherein R 1 , R 2 , and R 3 are independently lower alkyl, lower
alkoxy, lower alkanol, or C 3 -C 6 cycloalkyl; R 18 is H or OH;
R 9 is H or phenyl optionally substituted with halogen; R n ,
R 12 , and R 1 ^ are independently H or halogen and R 10 is an
optionally substituted 5-, 6-, or 7-membered
heterocycloalkyl with at least one N or 0 atom in the ring
or R 10 is heteroaryl with at least one N atom in the ring.
29. The compound of claim 16 having the formula
wherein R 1 , R 2 , and R 3 are independently lower alkyl, lower
alkoxy, lower alkanol, or C 3 -C 6 cycloalkyl; R 18 is H or OH;
R 11 , R 1? , and R 13 are independently H or halogen and R 10 is an
optionally substituted 5-, 6-, or 7-membered
heterocycloalkyl with at least one N or 0 atom in the ring
or R 10 is heteroaryl with at least one N atom in the ring.
30. A method for inducing apoptosis in a cell
comprising contacting the cell with a compound of claim 1
in an amount sufficient to induce apoptosis in the cell.
31. The method of claim 30, wherein said cell is
neoplastic .
32. The method of claim 30, wherein said cell
overexpresses an inhibitor of caspase .
33. The method of claim 30, wherein the inhibitor
inhibits activation or activity of one or more of a caspase
selected from caspase-3, caspase-7 and caspase-9.
34. A method of stimulating apoptosis in a cell
comprising contacting the cell with a compound of claim 1
in an amount sufficient to stimulate apoptosis in the cell.
35. The method of claim 34, wherein said cells are
cancer cells .
36. A method of enhancing apoptosis of pathogenic
cells in vivo in an individual comprising administering to
the individual a therapeutically effective amount of a
compound of claim 1.
37. The method of claim 36 further comprising
administering a second therapy selected from radiation,
chemotherapy, immunotherapy, photodynamic therapy and
combinations thereof .
38. A method of treating a disease associated with
the overexpression of IAP in an individual comprising administering to said individual an effective amount of a
compound of claim 1.
39. A method of treating cancer comprising administering a
therapeutically effective amount of a compound of claim 1.
40. A pharmaceutical composition comprising: a compound
selected from a compound of claim 1 and a pharmaceutically
acceptable excipient.
41. The composition of claim 40 further comprising a second
chemotherapeutic agent.
42. The composition of claim 41, wherein said second
chemotherapeutic agent is selected from alkylating agents,
plant alkaloids, antitumor antibiotics, antimetabolites,
topoisomerase inhibitors and combinations thereof.
43. The composition of claim 41, wherein said
chemotherapeutic agent is selected from altretamine,
busulfan, carboplatin, carmustine, chlorambucil, cisplatin,
cyclophosphamide, dacarbazine, hexamethylmelamine,
ifosfamide, lomustine, melphalan, mechlorethamine, oxaliplatin, procarbazine, streptozocin, temozolomide, thiotepa, uramustiπe, docetaxel, etoposide, lπnotecan, paclitaxel, tenisopide, topotecan, vincristine,
vinblastine, vmdesme, vmorelbme, bleomycin, dactmomycm, daunorubicin, epirubicm, hydroxyurea,
idarubicm, mitomycin, mitoxantrone, plicamycm, azathioprme, capecitabme, cladribme, cytarabme,
fludarabme, fluorouracil , floxuridine, gemcitabme, mercaptopurine , methotrexate, nelarabine, pemetrexed,
pentostatm, thioguanme, camptothecan, lπnotecan,
topotecan, BNP 1350, SN 38, 9-ammo-camptothecan, lurtotecan, gimatecan, diflomotecan, an anthracyclme,
anthraqumone, podophyllotoxm, doxorubicin, epirubicm,
idarubicm, nemorubicm, mitoxantrone, loxoxantrone,
etoposide, temposide and combinations thereof. |
IAP INHIBITORS
[0001J This application claims priority to and benefit
of U.S. Provisional Application No. 60/820,141 entitled
"IAP Inhibitors" filed on July 24, 2006; the entire
contents of which is hereby incorporated by reference in
its entirety.
[0002) Apoptosis (programmed cell death) plays a
central role in the development and homeostasis of all
multi-cellular organisms. Apoptosis can be initiated
within a cell from an external factor such as a chemokine
(an extrinsic pathway) or via an intracellular event such a
DNA damage (an intrinsic pathway) . Alterations in
apoptotic pathways have been implicated in many types of
human pathologies, including developmental disorders,
cancer, autoimmune diseases, as well as neuro-degenerative
disorders. One mode of action of chemotherapeutic drugs is
cell death via apoptosis.
J0003] Apoptosis is conserved across species and
executed primarily by activated caspases, a family of
cysteine proteases with aspartate specificity in their
substrates. These cysteine containing aspartate specific
catalytically inactive zymogens and are proteolytically
processed to become active proteases during apoptosis.
Once activated, effector caspases are responsible for
proteolytic cleavage of a broad spectrum of cellular
targets that ultimately lead to cell death. In normal
surviving cells that have not received an apoptotic
stimulus, most caspases remain inactive. If caspases are
aberrantly activated, their proteolytic activity can be
inhibited by a family of evolutionarily conserved proteins
called IAPs (inhibitors of apoptosis proteins}.
[0004] The IAP family of proteins suppresses apoptosis
by preventing the activation of procaspases and inhibiting
the enzymatic activity of mature caspases. Several
distinct mammalian IAPs including XIAP, c-IAPl, C-IAP2, ML-
IAP, NAIP (neuronal apoptosis inhibiting protein) , Bruce,
and survivin, have been identified, and they all exhibit
anti -apoptotic activity in cell culture. IAPs were
originally discovered in baculovirus by their functional
ability to substitute for P35 protein, an anti -apoptotic
gene. IAPs have been described in organisms ranging from
Drosophila to human, and are known to be overexpressed in
many human cancers. Generally speaking, IAPs comprise one
to three Baculovirus IAP repeat (BIR) domains, and most of
them also possess a carboxyl- terminal RING finger motif.
The BIR domain itself is a zinc binding domain of about 70
residues comprising 4 alpha-helices and 3 beta strands,
with cysteine and histidine residues that coordinate the
zinc ion. It is the BIR domain that is believed to cause
the anti-apoptotic effect by inhibiting the caspases and
thus inhibiting apoptosis. XIAP is expressed ubiquitously
in most adult and fetal tissues. Overexpression of XIAP in
tumor cells has been demonstrated to confer protection
against a variety of pro-apoptotic stimuli and promotes
resistance to chemotherapy. Consistent with this, a strong
correlation between XIAP protein levels and survival has
been demonstrated for patients with acute myelogenous
leukemia. Down-regulation of XIAP expression by antisense
oligonucleotides has been shown to sensitize tumor cells to
death induced by a wide range of pro-apoptotic agents, both
in vitro and in vivo. Smac/DIABLO-derived peptides have
also been demonstrated to sensitize a number of different
tumor cell lines to apoptosis induced by a variety of pro-
apoptotic drugs.
|OOθ5] In normal cells signaled to undergo apoptosis,
however, the IAP-mediated inhibitory effect must be
removed, a process at least in part performed by a
mitochondrial protein named Smac (second mitochondrial
activator of caspases) . Smac (or, DIABLO) , is synthesized
as a precursor molecule of 239 amino acids; the N-terminal
55 residues serve as the mitochondria targeting sequence
that is removed after import. The mature form of Smac
contains 184 amino acids and behaves as an oligomer in
solution. Smac and various fragments thereof have been
proposed for use as targets for identification of
therapeutic agents .
[0006] Smac is synthesized in the cytoplasm with an N-
terminal mitochondrial targeting sequence that is
proteolytically removed during maturation to the mature
polypeptide and is then targeted to the inter-membrane
space of mitochondria. At the time of apoptosis induction,
Smac is released from mitochondria into the cytosol,
together with cytochrome c, where it binds to IAPs, and
enables caspase activation, therein eliminating the
inhibitory effect of IAPs on apoptosis. Whereas cytochrome
c induces multimerization of Apaf-1 to activate procaspase-
9 and -3, Smac eliminates the inhibitory effect of multiple
IAPs. Smac interacts with essentially all IAPs that have
been examined to date including XIAP, c-IAPl, C-IAP2, ML-
IAP, and survivin. Thus, Smac appears to be a master
regulator of apoptosis in mammals.
[0007] It has been shown that Smac promotes not only
the proteolytic activation of procaspases, but also the
enzymatic activity of mature caspase, both of which depend
upon its ability to interact physically with IAPs. X-ray
crystallography has shown that the first four amino acids
(AVPI) of mature Smac bind to a portion of IAPs. This N-
terminal sequence is essential for binding IAPs and
blocking their anti-apoptotic effects.
(0008] Current trends in cancer drug design focus on
selective targeting to activate the apoptotic signaling
pathways within tumors while sparing normal cells. The
tumor specific properties of specific chemotherapeutic
agents, such as TRAIL have been reported. The tumor
necrosis factor-related apoptosis- inducing ligand (TRAIL)
is one of several members of the tumor necrosis factor
(TNF) superfamily that induce apoptosis through the
engagement of death receptors. TRAIL interacts with an
unusually complex receptor system, which in humans
comprises two death receptors and three decoy receptors .
TRAIL has been used as an anti -cancer agent alone and in
combination with other agents including ionising radiation.
TRAIL can initiate apoptosis in cells that overexpress the
survival factors BcI-2 and BcI-XL, and may represent a
treatment strategy for tumors that have acquired resistance
to chemotherapeutic drugs. TRAIL binds its cognate
receptors and activates the caspase cascade utilizing
adapter molecules such as TRADD. TRAIL signaling can be
inhibited by overexpression of cIAP-1 or 2, indicating an
important role for these proteins in the signaling pathway.
Currently, five TRAIL receptors have been identified. Two
receptors TRAIL-Rl (DR4) and TRAIL-R2 (DR5) mediate
apoptotic signaling, and three non- functional receptors,
DcRl, DcR2 , and osteoprotegerin (OPG) may act as decoy
receptors. Agents that increase expression of DR4 and DR5
may exhibit synergistic anti- tumor activity when combined with TRAIL.
[0009] The basic biology of how IAP antagonists work
suggests that they may complement or synergize other
chemotherapeutic/anti -neoplastic agents and/or radiation.
Chemotherapeutic/anti -neoplastic agents and radiation would
be expected to induce apoptosis as a result of DNA damage
and/or the disruption of cellular metabolism.
(0010} Inhibition of the ability of a cancer cell to
replicate and/or repair DNA damage will enhance nuclear DNA
fragmentation and thus will promote the cell to enter the
apoptotic pathway. Topoisomerases, a class of enzymes that
reduce supercoiling in DNA by breaking and rejoining one or
both strands of the DNA molecule, are vital to cellular
processes, such as DNA replication and repair. Inhibition
of this class of enzymes impairs the cells ability to
replicate as well as to repair damaged DNA and activates
the intrinsic apoptotic pathway.
[0011} The main pathways leading from topoisomerase-
mediated DNA damage to cell death involve activation of
caspases in the cytoplasm by proapoptotic molecules
released from mitochondria, such as Smac . The engagement
of these apoptotic effector pathways is tightly controlled
by upstream regulatory pathways that respond to DNA
lesions -induced by topoisomerase inhibitors in cells
undergoing apoptosis. Initiation of cellular responses to
DNA lesions- induced by topoisomerase inhibitors is ensured
by the protein kinases which bind to DNA breaks. These
kinases (non- limiting examples of which include Akt, JNK
and P38) commonly called "DMA sensors" mediate DNA repair,
cell cycle arrest and/or apoptosis by phosphorylating a
large number of substrates, including several downstream
kinases.
{0012] Platinum chemotherapy drugs belong to a general
group of DNA modifying agents. DNA modifying agents may be
any highly reactive chemical compound that bonds with
various nucleophilic groups in nucleic acids and proteins
and cause mutagenic, carcinogenic, or cytotoxic effects.
DNA modifying agents work by different mechanisms,
disruption of DNA function and cell death; DNA damage/the
formation of cross-bridges or bonds between atoms in the
DNA; and induction of mispairing of the nucleotides leading
to mutations, to achieve the same end result. Three non-
limiting examples of a platinum containing DNA modifying
agents are cisplatin, carboplatin and oxaliplatin.
(0013} Cisplatin is believed to kill cancer cells by
binding to DNA and interfering with its repair mechanism,
eventually leading to cell death. Carboplatin and
oxaliplatin are cisplatin derivatives that share the same
mechanism of action. Highly reactive platinum complexes
are formed intracellularly and inhibit DNA synthesis by
covalently binding DNA molecules to form intrastrand and
interstrand DNA crosslinks,
[0014] Non-steroidal anti- inflammatory drugs (MSAIDs)
have been shown to induce apoptosis in colorectal cells.
NSAIDs appear to induce apoptosis via the release of Smac
from the mitochondria (PNAS, November 30, 2004, vol.
101:16897-16902). Therefore, the use of NSAIDs in
combination with Smac mimetics would be expected to
increase the activity each drug over the activity of either
drug independently.
[0015] Many naturally occurring compounds isolated from
bacterial, plant, and animals can display potent and
selective biological activity in humans including
anticancer and antineoplastic activities. In fact, many
natural products, or semi -synthetic derivatives thereof,
which possess anticancer activity, are already commonly
used as therapeutic agents,- these include paclitaxel,
etoposide, vincristine, and camptothecin amongst others.
Additionally, there are many other classes of natural
products such as the indolocarbazoles and epothilones that
are undergoing clinical evaluation as anticancer agents.
[0016] A reoccurring structural motif in many natural
products is the attachment of one or more sugar residues
onto an aglycone core structure. In some instances, the
sugar portion of the natural product is critical for making
discrete protein- ligand interactions at its site of action
(i.e., pharmacodynamics) and removal of the sugar residue
results in significant reductions in biological activity.
In other cases, the sugar moiety or moieties are important
for modulating the physical and pharmacokinetic properties
of the molecule. Rebeccamycin and staurosporine are
representative of the sugar- linked indolocarbazole family
of anticancer natural products with demonstrated anti-
kinase and anti-topoisomerase activity.
SUMMARY OF THE INVENTION
[0017] The present invention provides IAP antagonists
that are peptidomimetic compounds that mimic the tertiary
binding structure and activity of the N-terminal four amino
acids of mature Smac to IAPs. The invention also provides
methods of using these mimetics to modulate apoptosis and
further for therapeutic purposes.
One aspect of the present invention is an
antagonist/inhibitor of an IAP that is a peptidomimetic
compound that mimics the tertiary binding structure of the
N-terminal amino acids of mature Sraac to IAPs and that has
either an optionally- substituted 5-, 6-, or 7-membered
heterocycloalkyl group with at least one N or 0 atom in the
ring, such as, for example, D- or L-fucose, xylose,
galactose, glucose, pyrrolidine, piperidine, or
perhydroazapine, or an optionally-substituted heteroaryl
group containing at least one N atom such as, for example,
pyridine, pyrimidine, or pyrazine, at the C- terminus of the
peptidomimetic. Such compounds include but are not limited
to monomers, homodimers, and heterodimers of such Smac
mimetics .
[0018] In one aspect of the present invention, an IAP
antagonist that is a monomeric, homodimeric or
heterodimeric compound having the general formula I or IV,
depicted below, and pharmaceutically acceptable salts
thereof. Solvates including hydrates, stereoisomers
including enantiomers, crystalline forms including
polymorphs, and the like are encompassed within the scope
of the invention.
[0019] Another embodiment of the present invention is
the therapeutic combination of compounds of the present
invention with TRAIL or other chemical or biological agents
which bind to and activate the TRAIL receptor (s) . TRAIL
has received considerable attention recently because of the
finding that many cancer cell types are sensitive to TRAIL-
induced apoptosis, while most normal cells appear to be
resistant to this action of TRAIL. TRAIL-resistant cells
may arise by a variety of different mechanisms including
loss of the receptor, presence of decoy receptors, or
overexpression of FLIP which competes for zymogen caspase-8
binding during DISC formation. In TRAIL resistance, Smac
mimetics increase tumor cell sensitivity to TRAIL leading
to enhanced cell death, the clinical correlations of which
are expected to be increased apoptotic activity in TRAIL
resistant tumors, improved clinical response, increased
response duration, and ultimately, enhanced patient
survival rate. In support of this, reduction in XIAP
levels by in vitro antisense treatment has been shown to
cause sensitization of resistant melanoma cells and renal
carcinoma cells to TRAIL (Chawla-Sarkar, et al . , 2004).
The Smac mimetics disclosed herein bind to IAPs and inhibit
their interaction with caspases, therein potentiating
TRAIL- induced apoptosis.
[0020] Another embodiment of the present invention
provides Smac mimetics which act synergistically with
topoismerase inhibitors to potentiate their apoptotic
inducing effect. Topoisomerase inhibitors inhibit DNA
replication and repair, thereby promoting apoptosis and
have been used as chemothemotherapeutic agents.
Topoisomerase inhibitors promote DNA damage by inhibiting
the enzymes that are required in the DNA repair process.
Therefore, export of Smac from the mitochondria into the
cell cytosol is provoked by the DNA damage caused by
topoisomerase inhibitors.
(0021] Topoisomerase inhibitors of both the Type I
class {camptothecin, topotecan, SN-38 {irinotecan active
metabolite) and the Type II class (etoposide) show potent
synergy with the Smac mimetics of the invention in a multi-
resistant glioblastoma cell line (T98G) , breast cancer line
(MDA~MB~231) , and ovarian cancer line (OVCAR-3) among
others . Further examples of topoisomerase inhibiting
agents that may be used include, but are not limited to,
irinotecan, topotecan, etoposide, amsacrine, exatecan,
gimatecan, etc. Other topoisomeraae inhibitors include,
for example, Aclacinomycin A, camptothecin, daunorubicin,
doxorubicin, ellipticine, epirubicin, and mitaxantrone .
[0016] In another embodiment of the invention, the
chemotherapeutic/anti -neoplastic agent may be a platinum
containing compound. In one embodiment of the invention
the platinum containing compound is cisplatin. Cisplatin
can synergize with a Smac peptidomimetic and potentiate the
inhibition of an IAP, such as but not limited to XIAP,
cIAP- 1, c-IAP-2, ML-IAP, etc. In another embodiment a
platinum containing compound is carboplatin. Carboplatin
can synergize with a Smac peptidomimetic and potentiate the
inhibition of an IAP, including, but not limited to, XIAP,
cIAP- 1, c-IAP-2, ML-IAP, etc. In another embodiment a
platinum containing compound is oxaliplatin. The
oxaliplatin can synergize with a Smac peptidomimetic and
potentiate the inhibition of an IAP, including, but not
limited to, XIAP, cIAP-1, c-IAP-2, ML-IAP, etc.
[0022) In another embodiment of the invention, the
chemotherapeutic/anti -neoplastic agent that synergizes with
a compound according to the present invention is a taxane .
Taxanes are anti-mitotic, mitotic inhibitors or microtubule
polymerization agents. Taxanes include but are not limited
to, dσcetaxel and paclitaxel.
[0023] Taxanes are characterized as compounds that
promote assembly of microtubules by inhibiting tubulin
depolymerization, thereby blocking cell cycle progression
through centrosomal impairment, induction of abnormal
spindles and suppression of spindle microtubule dynamics.
The unique mechanism of action of taxane is in contrast to
other microtubule poisons, such as Vinca alkaloids,
colchicine, and cryptophycines, which inhibit tubulin
polymerization. Microtubules are highly dynamic cellular
polymers made of alpha-beta-tubulin and associated proteins
that play key roles during mitosis by participating in the
organization and function of the spindle, assuring the
integrity of the segregated DNA. Therefore, they represent
an effective target for cancer therapy.
[0024J In another embodiment, any agent that activates
the intrinsic apoptotic pathway and/or causes the release
of Smac or cytochrome c from the mitochondria has the
potential to act synergiεtically with a Smac mimetic .
JO025J A combination of a Smac peptidomimetic and a
chemotherapeutic/anti neoplastic agent and/or radiation
therapy of any type that activates the intrinsic pathway
may provide a more effective approach to destroying tumor
cells. Smac peptidomimetics interact with IAP 1 s, such as
XIAP, cIAP-I, cIAP-2, ML-IAP, etc., and block the IAP
mediated inhibition of apoptosis while
chemotherapeutics/anti neoplastic agents and/or radiation
therapy kills actively dividing cells by activating the
intrinsic apoptotic pathway leading to apoptosis and cell
death. As is described in more detail below, embodiments
of the invention provide combinations of a Smac
pepidomimetc and a chemotherapeutic/anti-neoplastic agent
and/or radiation which provide a synergistic action against
unwanted cell proliferation. This synergistic action
between a Smac peptidomimetic and a chemotherapeutic/anti-
neoplastic agent and/or radiation therapy can improve the
efficiency of the chemotherapeutic/anti-neoplastic agent
and/or radiation therapy. This will allow for an increase
in the effectiveness of current chemotherapeutic/anti-
neoplastic agents or radiation treatment allowing the dose
of the chemotherapeutic/anti -neoplastic agent to be
lowered, therein providing both a more effective dosing
schedule as well as a more tolerable dose of
chemotherapeutic/anti -neoplastic agent and/or radiation
therapy.
fθO26] For simplicity and illustrative purposes, the
principles of the invention are described by referring
mainly to specific illustrative embodiments thereof. In
addition, in the following description, numerous specific
details are set forth in order to provide a thorough
understanding of the invention. It will be apparent
however, to one of ordinary skill in the art, that the
invention may be practiced without limitation to these
specific details. In other instances, well known methods
and structures have not been described in detail so as not
to unnecessarily obscure the invention.
DEFINITIONS
[0027] "Alkyl" and "alkylene" mean a branched or
unbranched, saturated or unsaturated (i. e. alkenyl,
alkenylene, alkynyl, alkynylene) non-cyclic aliphatic
hydrocarbon group, having up to 12 carbon atoms unless
otherwise specified. (However, if alkenylene is specified
but alkynylene is not, then alkynylene is excluded. E.g.,
"alkylene or alkenylene" excludes alkynylene.) When used
as part of another term, for example, "alkylamino" , the
alkyl portion may be a saturated hydrocarbon chain, however
also includes unsaturated hydrocarbon carbon chains such as
"alkenylamino" and "alkynylamino" . Examples of particular
alkyl groups include methyl, ethyl, n-propyl r isopropyl, n-
butyl , iso-butyl, sec-butyl, tert-butyl, n-pentyl, 2-
methylbutyl, 2 , 2 -dimethylpropyl, n-hexyl, 2- methylpentyl ,
2, 2-dimethylbutyl, n-heptyl, 3-heptyl, 2-methylhexyl , and
the like. The terms "lower alkyl", "C 1 -C 4 alkyl" and "alkyl
of 1 to 4 carbon atoms" are synonymous and used
interchangeably to mean methyl, ethyl, 1-propyl, isopropyl,
cyclopropyl, 1-butyl, sec-butyl or t-butyl. Unless
specified, optionally substituted alkyl groups may contain
one, two, three or four substituents which may be the same
or different. Examples of the above substituted alkyl
groups include, but are not limited to; cyanomethyl,
nitromethyl, hydroxymethyl , trityloxymethyl ,
propionyloxymethyl, aminomethyl, carboxymethyl,
carboxyethyl, carboxypropyl , alkyloxycarbonylmethyl,
allyloxycarbonylaminomethyl, carbamoyloxymethyl,
methoxymethyl, ethoxymethyl, t- butoxymethyl,
acetoxymethyl, chloromethyl, bromomethyl, iodomethyl,
trifluoromethyl , 6- hydroxyhexyl , 2,4-dichloro (n-butyl),
The alkyl group may also be substituted with a carbocycle
group. Examples include cyclopropylmethyl ,
cyclobutylmethyl , cyclopentylmethyl, and cyclohexylmethyl
groups, as well as the corresponding-ethyl , -propyl, -
butyl, -pentyl, -hexyl groups, etc. Particular substituted
alkyls are substituted methyl groups. Examples of the
substituted methyl groups include groups such as
hydroxymethyl, protected hydroxymethyl (e.g.,
tetrahydropyranyloxymethyl) , acetoxymethyl,
carbamoyloxymethyl, trifluoromethyl, chloromethyl,
carboxymethyl, bromomethyl and iodomethyl .
"Cycloalkyl" means a saturated or unsaturated cyclic
aliphatic hydrocarbon group, having up to 12 carbon atoms
unless otherwise specified and includes cyclic and
polycyclic, including fused cycloalkyl.
[0028] "Amino" denotes primary (i e., -NH 2 ), secondary
(i.e., -NRH) and tertiary {i.e. -NRR) amines.
[0029] Particular secondary and tertiary amines are
alkylamine, dialkylamine, arylamine, diarylamine,
aralkylamine and diaralkylamine . Particular secondary and
tertiary amines are methylamine, ethylamine, propylamine,
isopropylamine, phenylamine, benzylamine dimethylamine,
diethylamine, dipropylamine and disopropylamine .
[0030] "Aryl" when used alone or as part of another
term means a carbocyclic aromatic group whether or not
fused having the number of carbon atoms designated or if no
number is designated, up to 14 carbon atoms. Particular
aryl groups include phenyl, naphthyl, biphenyl,
phenanthrenyl , naphthacenyl, and the like (see e. g. Lang's
Handbook of Chemistry (Dean, J. A., ed) 13 th ed. Table 7-2
[1985] ). In a particular embodiment an aryl group is
phenyl. Optionally substituted phenyl or optionally
substituted aryl denotes a phenyl group or aryl group that
may be substituted with one, two, three, four or five
substituents chosen, unless otherwise specified, from
halogen (F, Cl, Br, I) , hydroxy, protected hydroxy, cyano,
nitro, alkyl (such as C 1 -C 6 alkyl) , alkoxy {such as C 1 -C 6
alkoxy} , benzyloxy, carboxy, protected carboxy,
carboxymethyl, protected carboxymethyl , hydroxymethyl,
protected hydroxymethyl, aminomethyl, protected
aminomethyl, trifluoromethyl, alkylsulfonylamino,
arylsulfonylamino, heterocyclylsulfonylatnino, heterocyclyl,
aryl, or other groups specified. One or more methyne (CH)
and/or methylene (CH;,) groups in these substituents may in
turn be substituted with a similar group as those denoted
above. Examples of the term "substituted phenyl" includes
but is not limited to a mono-or di (halo) phenyl group such
as 2-chlorophenyl , 2- bromophenyl , 4-chlorophenyl, 2,6-
dichlorophenyl, 2, 5-dichlorophenyl, 3 , 4-dichlorophenyl, 3-
chlorophenyl , 3 -bromophenyl, 4 -bromophenyl, 3,4-
dibromophenyl , 3 -chloro-4- fluorophenyl , 2- fluorophenyl and
the like; a mono-or di (hydroxy) phenyl group such as 4-
hydroxypheny1 , 3 - hydroxyphenyl , 2,4-dihydroxypheny1 , the
protected-hydroxy derivatives thereof and the like; a
nitrophenyl group such as 3 -or 4-nitrophenyl; a cyanophenyl
group, for example, 4 -cyanophenyl ; a mono-or di (lower
alkyl) phenyl group such as 4-methylphenyl, 2,4-
dimethylphenyl, 2- methylphenyl, 4- (iso-propyl) phenyl, 4~
ethylphenyl, 3- (n-propyl) phenyl and the like; a mono or
di (alkoxy) phenyl group, for example, 3 , 4-dimethoxyphenyl,
3~methoxy-4-benzyloxyphenyl, 3- methoxy-4- (1-chloromethyl)
benzyloxy-phenyl, 3-ethoxyphenyl, 4- (isopropoxy) phenyl,
4- (t-butoxy) phenyl, 3 -ethoxy-4 -methoxyphenyl and the
like; 3 -or 4 - trifluoromethylphenyl ; a mono- or
dicarboxyphenyl or (protected carboxy) phenyl group such 4-
(protected hydroxymethyl) phenyl such as 3- (protected
hydroxymethyl) phenyl or 3,4-di (hydroxymethyl) phenyl; a
mono-or di (aminomethyl) phenyl or (protected aminomethyl)
phenyl such as 2- (aminomethyl) phenyl or 2, 4- (protected
aminomethyl} phenyl; or a mono-or di (N-
(methylsulfonylamino) } phenyl such as 3- (N-
methylsulfonylamino) ) phenyl. Also, the term" substituted
phenyl" represents disubstituted phenyl groups where the
substituents are different, for example, 3-methyl-4-
hydroxyphenyl , 3- chloro-4-hydroxyphenyl, 2-methoxy~4 ~
bromophenyl , 4-ethyl-2-hydroxyphenyl , 3 -hydroxy-4-
nitrophenyl, 2-hydroxy-4 -chlorophenyl , and the like, as
well as trisubεtituted phenyl groups where the substituents
are different, for example 3-methoxy-4-benzyloxy-6-methyl
sulfonylamino, 3~ methoxy-4 -benzyloxy- 6 -phenyl
sulfonylamino, and tetrasubstituted phenyl groups where the
substituents are different such as 3 -methoxy-4 -benzyloxy- 5-
methyl -6 -phenyl sulfonylamino. Particular substituted
phenyl groups are 2-chlorophenyl , 2-aminophenyl, 2-
bromophenyl, 3- methoxyphenyl , 3-ethoxy-phenyl , 4-
benzyloxyphenyl, 4 -methoxyphenyl , 3-ethoxy-4-
benzyloxyphenyl , 3 , 4 -diethoxyphenyl , 3 -methoxy-4 -
phenyl, 3-methoxy-4- (1-chloromethyl) benzyloxy-6-methyl
sulfonyl aminopheπyl groups. Fused aryl rings may also be
substituted with the substituents specified herein, for
example with 1, 2 or 3 substituents, in the same manner as
substituted alkyl groups.
[0031] "Heterocyclic group", "heterocyclic",
"heterocycle" , "heterocyclyl" , "heterocycloalkyl" or
"heterocyclo" alone and when used as a moiety in a complex
group are used interchangeably and refer to cycloalkyl
group, i.e., any mono-, bi-, or tricyclic, saturated or
unsaturated, non-aromatic ring systems having the number of
atoms designated, generally from 5 to about 14 atoms, where
the ring atoms are carbon and at least one heteroatom
(nitrogen, sulfur or oxygen) . In a particular embodiment
the group incorporates 1 to 4 heteroatoms. Typically, a 5-
membered ring has 0 to 2 double bonds and 6 -or 7-membered
ring has 0 to 3 double bonds and the nitrogen or sulfur
heteroatoms may optionally be oxidized (e. g. SO, SO 2 ), and
any nitrogen heteroatσm may optionally be quaternized.
Particular non-aromatic heterocycles include morpholinyl
(morpholino) , pyrrolidinyl , oxiranyl, oxetanyl,
tetrahydrofuranyl , 2,3- dihydrofuranyl , 2H-pyranyl,
tetrahydropyranyl , aziridiπyl, azetidinyl, l-methyl-2-
pyrrolyl, piperazinyl and piperidinyl . For the avoidance
of doubt, "heterocycloalkyl includes heterocycloalkyl
alkyl.
[0032] "Heteroaryl" alone and when used as a moiety in
a complex group refers to any aryl group, i.e., mono-, bi-,
or tricyclic aromatic ring system having the number of
atoms designated where at least one ring is a 5-, 6-or 7-
membered ring containing from one to four heteroatoms
selected from the group nitrogen, oxygen, and sulfur
(Lang's Handbook of Chemistry, supra} . Included in the
definition are any bicyclic groups where any of the above
heteroaryl rings are fused to a benzene ring. The following
ring systems are examples of the heteroaryl (whether
substituted or unsubstituted) groups denoted by the term
"heteroaryl": thienyl, furyl, imidazolyl, pyrazolyl ,
thiazolyl, isothiazolyl, oxazolyl, isoxazolyl, triazolyl,
thiadiazolyl, oxadiazolyl, tetrazolyl, thiatriazolyl,
oxatriazolyl, pyridyl, pyrimidyl, pyrazinyl, pyridazinyl,
thiazinyl, oxazinyl, triazinyl, thiadiazinyl , oxadiazinyl,
dithiazinyl , dioxazinyl, oxathiazinyl, tetrazinyl,
thiatriazinyl, oxatriazinyl, dithiadiazinyl, imidazolinyl ,
dihydropyrimidyl , tetrahydropyrimidyl , tetrazolo [1, 5-b]
pyridazinyl and purinyl, as well as benzo- fused
derivatives, for example benzoxazolyl , benzofuryl,
benzothiazolyl, benzothiadiazolyl , benzotriazolyl ,
benzoimidazolyl and indolyl . Particularly"heteroaryls"
include; 1, 3 -thiazol-2-yl , 4- (carboxymethyl) -5-methyl- 1 ,
3- thiazol~2-yl, 4- (carboxymethyl) -5 -methyl- 1, 3-thiazol-
2-yl sodium salt, 1, 2 , 4-thiadiazol-5-yl , 3- methyl- 1, 2,4-
thiadiazol-5-yl, 1, 3 , 4-triazol-5-yl, 2 -methyl- 1, 3,4-
triazol-5-yl, 2 -hydroxy- 1, 3,4- triazol-5-yl, 2-carboxy-4-
methyl-1, 3 , 4 -triazol-5-yl sodium salt, 2-carboxy-4-methyl-
1, 3,4-triazol- 5-yl, 1, 3 -oxazol-2-yl, 1, 3 , 4 -oxadiazol-5-
yl, 2-methyl-l, 3 , 4-oxadiazol-5-yl , 2- (hydroxymethyl) - 1,
3 , 4-oxadiazol-5-yl, 1, 2 , 4 -oxadiazol-5-yl, I 7 3,4-
thiadiazol-5-yl, 2-thiol-l, 3 , 4- thiadiazol-5-yl , 2-
{methylthio) -1, 3 , 4 - thiadiazol-5 -yl, 2 -amino- 1, 3,4-
thiadiazol-5-yl, IH- tetrazol-5-yl , 1-methyl -IH- tetrazol-5-
yl, 1- (1- (dimethylamino) eth-2-yl}»l H- tetrazol-5-yl , 1-
(carboxymethyl) -1 H- tetrazol-5-yl , 1- {carboxymethyl) -IH-
tetrazol-5-yl sodium salt, 1- (methylsulfonic acid) -IH-
tetrazol-5-yl, 1- (methylsulfonic acid) -IH- tetrazol-5-yl
sodium salt, 2 -methyl -IH- tetrazol-5-yl, 1, 2 , 3 - triazol-5-
5-yl, 4-methyl-l, 2 , 3 -triazol-5-yl , pyrid-2-yl N- oxide, 6-
methoxy-2- (n-oxide) ~pyridaz-3 -yl, 6~hydroxypyridaz-3-yl ,
l-methylpyrid-2-yl, 1- methylpyrid-4-yl, 2 -hydroxypyritnid-
4-yl, 1,4, 5 , 6- tetrahydro-5 , 6-dioxo-4-methyl-as-triazin-3-
yl, 1, 4,5, 6- tetrahydro-4 ~ (formylmethyl) -5 , 6-dioxo-as-
triazin-3-yl, 2 , 5-dihydro-5-oxo-6 -hydroxy- astriazin-3 -yl ,
2 , 5-dihydro-5-oxo-6-hydroxy-as-triazin-3-yl sodium salt,
2, 5-dihydro-5-oxo-6- hydroxy-2 -methyl-astriazin- 3 -yl sodium
salt, 2 , 5-dihydro-5-oxo-6-hydroxy-2 -methyl-as- triazin-3 -yl ,
2 , 5 -dihydro- 5 -oxo- 6 -methoxy- 2 -methyl -as-triazin-3 -yl, 2,5-
dihydro-5-oxo-as-triazin-3-yl , 2,5- dihydro™5~oxo-2-methyl-
as-triazin-3 -yl, 2 , 5 -dihydro-5-oxo- 2 , 6 -dimethyl-as-
triazin-3-yl , tetrazolo [1, 5-b] pyridazin-6-yl and 8-
aminotetrazolo [1, 5-b] -pyridazin-6-yl. An alternative
group of "heteroaryl" includes: 4- (carboxymethyl) -5-
πiethyl-1, 3-thiazol-2-yl, 4- (carboxymethyl) -5- methyl- 1,
3 - thiazol-2-yl sodium salt, 1, 3 , 4 -triazol-5-yl , 2-methyl-
1, 3, 4-triazol-5-yl, lH-tetrazol-5-yl , 1-methyl-lH-
tetrazol-5-yl, 1- (1- (dimethylamino) eth-2-yl) -lH-tetrazol-
5-yl, 1- (carboxymethyl} - IH- tetrazol-5-yl, 1-
( carboxymethyl) -IH- tetrazol- 5 -yl sodium salt, 1-
(methylsulfonic acid) -IH- tetrazol-5-yl, 1- (methylsulfonic
1.4, 5,6- tetrahydro-5, 6~dioxo-4 -methyl-as-triazin-3 -yl , 1,
4.5, 6-tetrahydro-4- (2-formylmethyl) -5 , 6-dioxo- as-
triazin~3~yl , 2, 5-dihydro-5-oxo-6-hydroxy-2-methyl-as-
triazin-3-yl sodium salt, 2, 5~dihydro-5- oxo- 6 -hydroxy- 2-
methyl-as-triazin-3-yl, tetrazolo [1, 5-b] pyridazin-6-yl ,
and 8-aminotetrazolo [1, 5- b] pyridazin-6-yl .
|0033] For the avoidance of doubt, aryl includes fused
aryl which includes, for example, naphthyl, indenyl and
also include arylalkyl; cycloalkyl includes fused
cycloalkyl which includes, for example, tetrahydronaphthyl
and indanyl; heteroaryl includes fused heteroaryl which
includes, for example, indoyl, benzofuranyl, benzothienyl
and also includes cycloalkylalkyl ; heterocyclo includes
fused heterocycloalkyl which includes, for example,
indolinyl, isoindolinyl, tetrahydroquinolinyl ,
tetrahydroisoquinolinyl and also includes
heterocycloalkylalkyl .
[0034] "Optionally substituted" means that a H atom can
be, but is not necessarily, replaced by one or more
different atoms. One of skill in the art will readily
know, or can readily ascertain, what atoms or moieties can
be substituted for a hydrogen atom or atoms in a given
position. Typical optional substituents are any one or
more of hydroxy, alkyl, lower alkyl, alkoxy, lower alkoxy,
cycloalkyl, heterocycloalkyl , aryl, heteroaryl, halogen,
pseudohalogen, haloalkyl, pseudohaloalkyl, carbonyl,
carboxyl , tnercapto, amino, nitro, and thiocarbonyl , but
other moieties can also be optional substituents. So, for
example, optionally substituted nitrogen can mean an amide,
sulfonamide, urea, carbamate, alkylamines, dialkylamines,
arylamines, etc; optionally substituted alkyl includes
methyl, ethyl, propyl, isopropyl, t -butyl, etc.;
optionally substituted aryl includes phenyl, benzyl, tolyl,
pyridine, naphthyl, imidazole, etc. Reference to a group
as "optionally substituted" encompasses that group when it
is substituted as described above or, alternatively, when
it is unsubstituted. When "optionally substituted" is used
in front of or at the end of a listing of chemical groups,
all such groups are optionally substituted (unless
otherwise indicated by context.)
10035] A "Linker" is a bond or linking group whereby
two chemical moieties are directly covalently linked one to
the other or are indirectly linked via a chemical moiety
that covalently links the two chemical moieties, in either
case, to form a homo- or heterodimer. A Linker (L) ,
therefore, is a single, double, or triple covalent bond or
is a contiguous chain, branched or unbranched, substituted
or unsubstituted, of 1 to about 100 atoms, typically 1 to
about 20 atoms and typically up to about 500 MW, e.g.,
alkyl, alkylene, alkylyne, alkyloxyalkyl, alkylarylalkyl ,
or optionally-substituted alkyl, alkylene, alkylyne,
alkyloxyalkyl, alkylarylalkyl chain of 1 to 12 atoms.
Illustrative Linkers are described, e.g., in US 20050197403
as well as in US Patent Application Serial Number
11/363,387 filed 2/27/2006, both of which are incorporated
herein by reference as though fully set forth.
[0036] "Pseudohalogens" are binary inorganic compounds
of the general form XY, where X is a cyanide, cyanate,
thiocyanate etc. group and Y is any of X, or a true
halogen. Not all combinations are known to be stable.
Examples include cyanogen, (CN) 2 and iodine cyanide, ICN.
These anions behave as halogens and the presence of the
internal double bonds or triple bonds do not appear to
affect their chemical behavior.
[0037] "Inhibitor" or "antagonists" means a compound
which reduces or prevents the binding of IAP proteins to
caspase proteins or which reduces or prevents the
inhibition of apoptosis by an IAP protein, or which binds
to an IAP BIR domain in a manner similar to the amino
terminal portion of Smac, thereby freeing Smac to inhibit
the action of an IAP,
[0038] "Pharmaceutically acceptable salts" include both
acid and base addition salts. "Pharmaceutically acceptable
acid addition salt" refers to those salts which retain the
biological effectiveness and properties of the free bases
and which are not biologically or otherwise undesirable,
formed with inorganic acids such as hydrochloric acid,
hydrobromic acid, sulfuric acid, nitric acid, carbonic
acid, phosphoric acid and the like, and organic acids may
be selected from aliphatic, cycloaliphatic, aromatic,
araliphatic, heterocyclic, carboxylic, and sulfonic classes
of organic acids such as formic acid, acetic acid,
propionic acid, glycolic acid, gluconic acid, lactic acid,
pyruvic acid, oxalic acid, malic acid, maleic acid,
maloneic acid, succinic acid, fumaric acid, tartaric acid,
citric acid, aspartic acid, ascorbic acid, glutamic acid,
anthranilic acid, benzoic acid, cinnamic acid, mandelic
acid, embonic acid, phenylacetic acid, methanesulfonic
acid, ethanesulfonic acid, p-tolυenesulfonic acid,
salicyclic acid and the like.
DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS
[0039] It must also be noted that as used herein and in
the appended claims, the singular forms "a", "an", and
"the" include plural reference unless the context clearly
dictates otherwise. Unless defined otherwise, all
technical and scientific terms used herein have the same
meanings as commonly understood by one of ordinary skill in
the art. Although any methods similar or equivalent to
those described herein can be used in the practice or
testing of embodiments of the present invention, the
preferred methods are now described. All publications and
references mentioned herein are incorporated by reference.
Nothing herein is to be construed as an admission that the
invention is not entitled to antedate such disclosure by
virtue of prior invention,
[0040] The terms "mimetic, " "peptide mimetic" and
"peptidomimetic" are used interchangeably herein, and
generally refer to a peptide, partial peptide or non-
peptide molecule that mimics the tertiary binding structure
or activity of a selected native peptide or protein
functional domain (e.g., binding motif or active site) .
These peptide mimetics include recombinantIy or chemically
modified peptides, as well as non-peptide agents such as
small molecule drug mimetics, as further described below.
[0041] As used herein, the terms "pharmaceutically
acceptable", "physiologically tolerable" and grammatical
variations thereof, as they refer to compositions,
carriers, diluents and reagents, are used interchangeably
and represent that the materials can be administered to a
human being .
[0042] As used herein "subject" or "patient" refers to
an animal or mammal including, but not limited to, human,
dog, cat, horse, cow, pig, sheep, goat, chicken, monkey,
rabbit, rat, mouse, etc.
[0043) As used herein, the term "therapeutic" means an
agent utilized to treat, combat, ameliorate, prevent or
improve an unwanted condition or disease of a patient.
Embodiments of the present invention are directed to
promote apoptosis, and thus cell death.
[0044] The terms "therapeutically effective amount" or
"effective amount", as used herein, may be used
interchangeably and refer to an amount of a therapeutic
compound component of the present invention. For example,
a therapeutically effective amount of a therapeutic
compound is a predetermined amount calculated to achieve
the desired effect, i.e., to effectively promote apoptosis,
preferably by eliminating an IAP inhibition of apoptosis,
more preferably by inhibiting an IAP binding to a caspase .
[0045] It has been demonstrated in accordance with the
present invention that the IAP-binding compounds of the
present invention are capable of potentiating apoptosis of
cells .
[0046] Optionally substituted 5-, 6-, or 7-merabered
heterocycloalkyl groups with at least one N or O atom in
the ring that are useful in the practice of the invention
include, for example, pyrrolidine, piperidine,
perhydroazapine rings, or monosaccharides or disaccharides,
each unit comprising three to six carbon atoms, although
longer chain polysaccharides can also be employed. These
include, for example, trioses, tetroses, pentoses, and
hexoses, such as glucose, mannoεe, fructose, xylose,
erythrose, fucose, galactose, etc. The sugars can be
naturally-occurring (including D- and L-sugars} or non-
naturally-occurring sugars or derivatives thereof and can
be the alpha or beta anomers . Heteroaryl groups with at
least one N atom in the ring that are useful in the
practice of the invention include, for example, pyridine,
pyrimidine, or pyrazine.
[0047] Chemical procedures for synthesizing or
derivatizing, or modifying, Smac mimetics by binding an
optionally substituted 5-, 6-, or 7-membered
heterocycloalkyl group with at least one N or O atom in the
ring or a heteroaryl group with at least one M atom in the
ring thereto are known to person of skill in the art or can
be determined without undue experimentation.
[0048) Monomeric IAP antagonists of the invention
include compounds of formula I :
] [0049] wherein
[0050] Z 1 and Z 2 are each independently CH or N;
[0051] R 1 is H or optionally substituted hydroxy, alkyl,
cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; and when
R/ is H then R 2 and R 1 can together form an aziridine or
azetidine ring;
[0052] R 2 and R 2 1 are each independently H or optionally-
substituted alkyl, cycloalkyl, or heterocycloalkyl; or when
R 2 ' is H then R 2 and R 1 can together form an aziridine or
azetidine ring;
(0053} R 3 and R 4 are each independently H or optionally
substituted alkyl, cycloalkyl, heterocycloalkyl, aryl, or
heteroaryl; or, R 3 and R 4 are each carbon and are linked by
a covalent bond or by an optionally-substituted alkylene or
alkenylene group of 1 to 8 carbon atoms where one to three
carbon atoms can be replaced by N, 0, S(O) n , or C=O;
[0054] R 5 and R 6 are each independently H or optionally
substituted hydroxy, alkyl, cycloalkyl, heterocycloalkyl,
aryl , or heteroaryl ; or R 5 and R 6 are each carbon and are
linked by a covalent bond or by an optionally-substituted
alkylene or alkenylene group of 1 to 8 carbon atoms where
one to three carbon atoms can be replaced by N, 0, S(O) n , or
OO ;
[0055) M is a bond or an optionally substituted
alkylene group of 1 to 5 carbon atoms;
[0056] G is a bond, a heteroatom, -(C=O)-, -S(O) n -, -
NR 8 -, -NCOR 6 -, or -NS(O) n R 8 -, where R 8 is lower alkyl,
optionally-substituted lower alkyl or C 3 . a cycloalkyl;
[0057] R 7 is optionally substituted alkyl, cycloalkyl,
heterocycloalkyl , aryl , or heteroaryl, wherein R 7 is
substituted with -L 1 -R 10 and is optionally further
substituted;
[0058] L 1 is a covalent bond or optionally substituted
C 1 X 6 alkylene;
[0059J R 10 is an optionally substituted 5-, 6-, or 7-
membered heterocycloalkyl group with at least one N or 0
atom in the ring or R 10 is a heteroaryl group with at least
one N atom in the ring;
[0060] n can be the same or different in each usage and
is 0, 1, or 2;
(0061) and pharmaceutically acceptable salts and
solvates thereof .
[0062] In illustrative embodiments of compounds of
Formula I, when Z 1 is M and Z 2 is CH, then at least one of
the following is true :
[0063) (i) R 5 and R 6 together are not both carbon atoms
1 -i ^ V,
[0064] (ii) R 5 and R 6 are both carbon atoms linked by a
single covalent bond and R 5 is disubstituted;
|0065] (iii) R b and R 6 are both carbon atoms linked by a
single covalent bond and R 6 is mono- or disubstituted;
[0066] (iv) R 5 and R 6 are both carbon atoms linked by a
single covalent bond and R 3 and R 4 are both carbon atoms
linked by a covalent bond or by an optionally-substituted
alkylene or alkenylene group of 1 to 8 carbon atoms where
one to three carbon atoms can be replaced by N, O, S(O) n , or
C=O.
[0067] In illustrative embodiments of compounds of
Formula I, one or any two or more of the following
limitations apply to compounds in which the preceding
limitations on R 5 and R 6 apply or in which the preceding
limitations on R 5 and R 6 don't apply:
[0068] (1) M is optionally- substituted C 1 -C j , alkylene,
alkenylene, or alkynylene ; or M is C 1 -C 2 alkylene
optionally-substituted with lower alkyl; or M is C 1 -C 3
alkylene {excluding alkenylene and alkynylene) optionally-
substituted with lower alkyl;
[0069] (2) G is a bond;
[0071| (4) L 1 is a covalent bond or C 1 -C 4 alkylene ; or L 1
is a single covalent bond;
[θ072J (5) R 10 is a tetrahydrofuranyl or
tetrahydropyranyl moiety optionally substituted with
hydroxy, lower alkyl, lower alkoxy, or optionally-
substituted lower alkoxy selected from arylalkyloxy,
alkylcarbonyloxy, arylcarbonyloxy, acetyloxy; or, R 10 is an
optionally-substituted nitrogen-containing 5- to 7-membered
heteroaryl or heterocycloalkyl group; or R 10 is
tetrahydrofuranyl or tetrahydropyranyl substituted with at
least one hydroxy or acetyloxy group; or R 10 is a 5- to 7-
membered heteroaryl or heterocycloalkyl group having a
single nitrogen atom in the ring and no additional
heteroatoms
[0073] (6) R 1 is H, methyl, allyl, propargyl, ethyl,
cycloalkyl, hydroxyethyl or cycloalkylmethyl ; or R 1 is H,
methyl, allyl, propargyl, ethyl, cycloalkyl, hydroxy ethyl
or cycloalkylmethyl ;
(0074] (7) R 2 and R 2 1 are independently H, methyl,
fluoromethyl , difluoromethyl, ethyl, hydroxyethyl,
fluoroethyl, and cycloalkyl; or R 2 and R 2 ' are independently
H, methyl, fluoromethyl , difluoromethyl , ethyl,
hydroxyethyl , fluoroethyl, and cycloalkyl;
[0075] (8} R 3 and R 4 are independently H, methyl, ethyl,
isopropyl, isobutyl, sec-butyl, tert -butyl, cycloalkyl,
heterocycloalkyl , aryl , or heteroaryl, optionally-
substituted with hydroxyl, mercapto, sulfonyl,
alkylsulfonyl , halogen, pseudohalogen, amino, carboxyl,
alkyl , haloalkyl, pseudohaloalkyl, alkoxy, or alkylthio, or
R 3 and R 4 are carbon atoms and are linked by a covalent bond
or by an optionally-substituted alkylene or alkenylene
group of 1 to 3 carbon atoms of which 1 or more atoms can
be replaced by N, O, S(O) n , or C-O; or R 3 and R 4 are linked
by a covalent bond or by an optionally-substituted alkylene
or alkenylene group of 1 to 3 carbon atoms of which 1 or
more atoms can be replaced by N, 0, S(O) n , or C=O;
[0076| (9) R 5 and R 6 are independently optionally
substituted lower alkyl or C 3 -C 8 cycloalkyl wherein the
optional substituents are hydroxy or lower alkoxy, or R 5 and
R 6 are carbon atoms and are linked by a covalent bond or by
an optionally-substituted alkylene or alkenylene group of 1
to 3 carbon atoms of which 1 or more atoms can be replaced
by N, 0, S(O) n , or C-O;
[0077] (10) R 7 is Ha or lib:
[0078] wherein Ll is a single covalent bond
X is -N-, -C=C(R 16 )-, -N=C- or -C(O)N-;
Y is -C-, -N-, or -N + -; such that,
[0079] When Y is -C- then R,, R 11 , R 12 , R 13 , R 14 , R 15 , and
R 16 are, independently, -H, halogen, or optionally
substituted alkyl, cycloalkyl, heterocycloalkyl, aryl,
heteroaryl, hydroxy, alkoxy, polyalkylether, amino,
alkylamino, dialkylamino, alkoxyalkyl, sulfonate, aryloxy,
heteroaryloxy, acyl , acetyl, carboxylate, sulfonate,
sulfoπe, imine, or oxime; provided that when X is -N- or -
C(O)-N-, -Ll-R 10 is bound to the -N- atom; and, when X is -
C=C(R 16 )- or -N=C-, -Ll-R 10 is bound to the -C= atom,- and
[0080} When Y is -N- or -N"-, then RIl is absent or -O ,
and R 9 , R 12 , R 13 , R 4 , R 15 , and R 16 are, independently, -H,
halogen, or optionally substituted alkyl, cycloalkyl,
heterocycloalkyl, aryl , heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylammo, dialkylamino,
alkoxyalkyl, sulfonate, aryloxy, heteroaryloxy, acyl,
acetyl, carboxylate, sulfonate, sulfone, imine, or oxime;
provided that when X is -N- or -C(O)-N-, -L 1 -R 10 is bound to
the -N- atom; and, when X is -C=C(R 16 )- or -N=C-, -Ll-R 10 is
bound to the -C= atom; or
[0081] ( 11 ) R 7 is Ha or lib ;
|0082] X is -N- ;
[0083J Y is -C-, -N-, or -N + -; such that
(0084] When Y is -C-, then R 9 , R 11 , R^, R 13 , R 14 and R 15
are, independently, -H, halogen, or optionally substituted
alkyl, cycloalkyl, heterocycloalkyl, aryl, heteroaryl,
hydroxyl, alkoxy, polyalkylether, ammo, alkylammo,
dialkylamino, alkoxyalkyl, sulfonate, aryloxy or
heteroaryloxy;
[00851 When Y is -N-, then R 11 is absent, and R 3 , R i2 ,
R 1J , R 14 and R 15 are, independently, -H, halogen, or
optionally substituted alkyl , cycloalkyl, heterocycloalkyl ,
aryl, heteroaryl, hydroxyl, alkoxy, polyalkylether, ammo,
alkylammo, dialkylammo, alkoxyalkyl, sulfonate, aryloxy
or heteroaryloxy;
[0086] When Y is -N + -, then R 11 is -O , and R 9 , R 12 , R 13 ,
R 14 and R 1 b are, independently, -H, halogen, or optionally
substituted alkyl, cycloalkyl, heterocycloalkyl, aryl,
heteroaryl, hydroxyl, alkoxy, polyalkylether, amino,
alkylamiπo, dialkylammo, alkoxyalkyl, sulfonate, aryloxy
or heteroaryloxy;
(0087J In illustrative embodiments, the compound of
formula 1 has the formula (III) :
A is a single or double bond;
[0088J When A is a single bond and Y is -C- then R 3 a, R 9 b, R 11 , R 171 R 1 .,, R 14 , and R 17 are, independently, -H,
halogen, or optionally substituted alkyl, cycloalkyl,
heterocycloalkyl , aryl, heteroaryl, hydroxy, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino,
alkoxyalkyl, sulfonate, aryloxy, heteroaryloxy, acyl,
acetyl, carboxylate, sulfonate, sulfone, imine, or oxime;
[0089] When A is a single bond and Y is -N- or -N + -,
then R 11 is absent or -0 ' , and R 9 a, R 5 b, R 12 , R 13 , R 14 , and R 17
are, independently, -H, halogen, or optionally substituted
alkyl, cycloalkyl, heterocycloalkyl, aryl, heteroaryl,
hydroxy, alkoxy, polyalkylether, amino, alkylamino,
dialkylamino, alkoxyalkyl, sulfonate, aryloxy,
heteroaryloxy, acyl, acetyl, carboxylate, sulfonate,
sulfone, imine, or oxime;
[0090] When A is a double bond and Y is -C- then R 9 b and
R 17 are absent; and R^a, R 11 , R 12 , R 13 , and R 14 are,
independently, -H, halogen, or optionally substituted
alkyl, cycloalkyl, heterocycloalkyl, aryl, heteroaryl,
hydroxy, alkoxy, polyalkylether, amino, alkylamino,
dialkylamino, alkoxyalkyl, sulfonate, aryloxy,
heteroaryloxy, acyl, acetyl, carboxylate, sulfonate,
sulfone, imine, or oxime,-,
(0091] When A is a double bond and Y is -N- or -N + -,
then R 9 b and R 17 are absent; and R n is absent or -O , and
R g a, R ]? , R 13 , and R 14 are, independently, -H, halogen, or
optionally substituted alkyl, cycloalkyl, heterocycloalkyl ,
aryl, heteroaryl, hydroxyl, alkoxy, polyalkylether, amino,
alkylamino, dialkylamino, alkoxyalkyl, sulfonate, aryloxy,
heteroaryloxy, acyl, acetyl, or carboxylate, sulfonate,
sulfone, imine, or oxime;
[0092J Specific illustrative compounds of formula 1
include those shown below as compounds A through U and HH through SS .
J0093J Dimeric compounds of the invention include compounds of formula IV:
[0094 J wherein
Z 1 SL 1 Z 2 a, Z x b, and Z 2 b are independently CH or N;
[0095] R 1 B. and R α b are independently H or optionally
substituted hydroxyl, alkyl, cycloalkyl, heterocycloalkyl ,
aryl , or heteroaryl; and when R ? a' is H then R 2 a and R 1 S. can
together form an aziridine or azetidine ring and when R 2 b •
is H then R 2 b and R^b can together form an aziridine or
azetidine ring;
[0096J R ? a, R 2 a', R 2 b and R ? b ' are independently H or
optionally substituted alkyl, cycloalkyl, or
heterocycloalkyl; or when R 2 a' is H then R 2 a and R 1 a can
together form an aziridine or azetidine ring and when R 2 b '
is H then R 2 b and R τ b can together form an aziridine or
[0097} R,a, R,b, R^a and R 4 b are independently H or
optionally substituted alkyl, cycloalkyl, heterocycloalkyl ,
aryl, or heteroaryl; or, R 4 a and R 3 a, or R 4 b and R 3 b, or
both, are carbon atoms linked by an optionally-substituted
alkylene or alkenylene group of 1 to 8 carbon atoms where
one to three carbon atoms can be replaced by N, 0, S(O) n , or
C=O;
[0098] R 5 a, R 6 a, R 5 b, and R 6 b are independently H or
optionally substituted hydroxyl, alkyl, cycloalkyl,
heterocycloalkyl, aryl, or heteroaryl; or R s a and R β a or R sb
and R 6 b, or both, are carbon atoms linked by an optionally-
substituted alkylene or alkenylene group of 1 to 8 carbon
atoms where one to three carbon atoms can be replaced by N,
0, S(O) n , or C=O;
[0099] n can be the same or different in each usage and
is 0 , 1 , or 2 ;
[0010O] Xa is -0- , -N{La-R xo a) -, -S-, optionally-
substituted -C{La-R, o a) =CH-, -C(O)-O-, -C(O) -N (La-R^a) -, -
N=C(La-R 10 a)-;
JOOlOl] Xb is -0-, -N(Lb-R lc b)-, -S-, optionally-
substituted -C(Lb-R lo b)=CH-, -C(O)-O-, -C(O) -N(Lb-R. o b) -, -
N=C(Lb-R lo b) -, provided that if Xb is -0- , -S-, or -C(O)-O-,
then Xa is -N (La-R :o a) - , optionally-substituted -C(La-
R, o a)=CH-, -C(O) -N(La-R 10 a)-, or -N=C (La-R 10 a) -, and if Xa is
-0-, -S-, or -C(O)-O-, then Xb is -N (Lb-R 10 b) - , optionally-
substituted -C(Lb-R ιo b) =CH~, -C(O) -N(Lb-R ιo b)-, or -N=C(Lb-
R lo b)- ;
[00102] La and Lb are independently a covalent bond or
C 1 -C 4 alkylene;
[00103] R 10 a and R iO b are independently an optionally
substituted 5-, 6-, or 7-membered heterocycloalkyl with at
least one N or 0 atom in the ring or heteroaryl with at
least one N atom in the ring, provided that one but not
both of R 10 a and R ]o b can optionally be -H;
|00104] Wa and Wb are together a Linker.
[00105] In illustrative embodiments, Xa is -N (La-R 10 a) -,
-C(La-R 10 a} -, or -N=C (La-R 10 a) -, Xb is -N-, La is a bond, -
R 10 a is an optionally substituted S-, 6-, or 7-membered
heterocycloalkyl with at least one N or O atom in the ring
or heteroaryl with at least one N atom in the ring, and Lb
is a bond, and -R 10 b is H.
[00106] Any one or any two or more of the above
limitations can also apply to compounds having formula IV.
Other limitations that can apply to dimeric IAP antagonists
of the invention include:
[00107] Wa and Wb together are a covalent bond or
optionally substituted alkylene, cycloalkyl, or aryl , of 2
to 20 carbon atoms where one or more carbon atoms can be
replaced with N, O, or S(O) n ; and Xa and Xb are
independently -0-, -S-, or -C(O)-O-; or Wa and Wb together
form a single covalent bond; and/or
one of R 10 a and R 10 b is -H or, if Xa or Xb is -0- , -S-, or - C(O)-O-, then R lo a or R 10 b, respectively, is absent.
[00108] Illustrative embodiments have the following
formulae :
{00109] wherein R 1 , R,, and R 3 are independently lower
alkyl, lower alkoxy, lower alkanol, or C 3 -C 6 cycloalkyl; R 13
is H or OH; R 11 , R 12 , and R 13 are independently H or halogen
and R 10 is an optionally substituted 5-, S-, or 7-membered
heterocycloalkyl with at least one N or 0 atom m the ring
or R 10 is heteroaryl with at least one N atom m the ring.
[00110] Specific illustrative compounds of formula IV
include those shown below as compounds V through GG.
[00111} Following are illustrative schemes illustrating
preparation of modified monomers and dimers. Using similar
synthetic techniques, the sugar-modified Smac mimetics
shown m Tables 1 and 2, below, and the piperdine-
substituted Smac mimetics shown m Table 3, below, were prepared
[00112] The binding affinity of illustrative compounds
of the present invention to an IAP was determined
substantially as described by Nikolovska-Coleska, Z. et.al.
(Analytical Biochemistry (2004), vol. 332:261-273) using a
variety of fluorogenic substrates and is reported as a Kd
value. Briefly, various concentrations of IAP antagonists
were mixed with 5 nM fluorescently labeled peptide (AbuRPF-
K(5-Fam) -NH 2 ) and 40 nM of an IAP-BIR3 for 15 min at RT in
100 mL of 0.1M Potassium Phosphate buffer, pH 7.5
containing 100 mg/ml bovine g-globulin. Following
incubation, the polarization values (mP) were measured on a
Victor2V using a 485nm excitation filter and a 520 nm
emission filter. IC50 values were determined from the plot
using nonlinear least -squares analysis using GraphPad
Prism. The compounds described herein afford Kd values in
the ranges of: Kd <0.1 μM (A), Kd = 0.1-1 μ M (B), Kd = 1-
10 μM (C) , and Kd >10 μM (D) .
[00113] Abbreviations used in the following
preparations, which are illustrative of synthesis of
compounds of the invention generally, are: Cbz :
Benzyloxycarbonyl ; Boc: tert-butyloxycarbonyl ; THF:
tetrahydrofuran; DCM: dichloromethane; DDQ: 2 , 3-dichloro-
5 , 6 -dicyano-1 , 4 -benzoqumone ; NMP: N~methylpyrrolidmone;
DMF: dimethylformamide ; TFA: trifluoroacetic acid; HOAc or
AcOH: acetic acid; Hex: hexanes,- HPLC: high performance
liquid chromatography; TLC: thin layer chromatography;
EtOAc: ethyl acetate,- DIPEA: dnsopropylethylamine; TEA:
triethylamme; HATU; 2- (7-Aza-lH-benzotriazole-l-yl) -
1,1,3,3- tetramethyluronium hexafluorophosphate .
[00114] Preparation of Monomeric IAP Antagonists.
(Formula 13, below. Referred to as Compound A m Table 1,
below. )
Scheme I
HATU
[O0ϊI5J Indoline (2) :A round bottom flask containing
trifluoroacetic acid (60 mL) was cooled to 0 C under
nitrogen and triethylsilane (1.16 g, 1.6 mL, 9.96 mmol) was
added followed by the dropwise addition of indole 1 (1.17
g, 3.32 mmol ; prepared using a modification of the
procedure reported by Macor, et al . J. Med. Chem. 1992, 35,
4503-4505) in 9 mL dry dichloromethane, added over 1 hour.
Following complete addition, the solution was stirred for
10 min. Thin layer chromatography (2/1 Hex/EA) indicated
no remaining 1. The solvent was removed in vacuo and the
residue was dissolved in EtOAc. The organic layer was
washed with saturated NaHCO 3 (2X), and brine. The EtOAc
layer was dried over Na 2 SO 4 , filtered, and concentrated.
Purification by column chromatography on silica gel {2/1
hexane/ethyl acetate) afforded 2 as a yellow oil (0.79 g,
67%). 1 H NMR (CDCl j , 300 MHz) δ7.34-7.31 <m, 5H), 6.99-6.85
(m, IH), 6.34-6.27 (m, 2H), 5.12 (s, 2H), 4.13-3.71 (m,
2H), 3.58-3.16 (m, 5H), 2.05-1.87 (m, 4H), 1.73-1.57 (m,
2H) ppm.
[00116) N- substituted indoline { 3 U
A mixture of compound 2 (0,79 g, 2.23 mmol), D- (+) -Xylose
(1.0 g, 6.69 mmol), and ammonium sulfate {0.88 g, 6.69
mmol) in ethanol (50 mL) was heated at 75 C overnight.
Thin layer chromatography (10% MeOH/CH ? Cl 2 ) indicated no
remaining 2. The reaction mixture was preabsorbed on to
silica gel and purified by column chromatography on silica
gel (2% MeOH/CH 2 Cl 2 to 5% MeOH/CH 2 Cl 2 ) to afford compound 3
as a yellow solid (0.98 g, 90%). 1 H NMR (CDCl 3 , 300 MHz)
67.33-7.31 (m, 5H), 6.91 (t, J = 2.4 Hz, IH), 6.39-6.27 (m,
2H), 5.12-4.99 (m, 3H), 4.62-4.45 (m, IH), 4,05-3.87 (m,
3H), 3.79-3.56 (m, 4H), 3.48-3.29 (m, 6H), 2.29-1.92 (m,
4H), 1.77-1.28 (m, 2H) ppm.
|θO117J Substituted indole (4) :
To a solution of 3 (0.98 g, 2.01 mmol) in anhydrous 1,4-
dioxane (30 mL) was added 2 , 3~dichlαro-5 , 6-dicyano-l, 4 -
benzoquinone (0.55 g, 2.42 mmol} neat in one portion. The
reaction was stirred at room temperature for 30 min.
Thin layer chromatography (10% MeOH/CH 5 Cl 2 ) indicated no
remaining 3. The reaction mixture was filtered and the
solid washed with EtOAc. The filtrate was washed with
saturated MaHCO 3 (4X), brine, dried over Na 3 SO,,, filtered,
and concentrated. Purification by column chromatography on
silica gel (2% MeOH/CH 2 Cl 7 to 5% MeOH/CH 2 Cl 2 ) afforded 4 as
a white solid (0.792 g, 81%). '1 H NMR (CDCl 3 , 300 MHz)
δ7.49-7.44 (m, IH) , 7.34-7.29 (m, 5H) , 7.18-7.02 (m, IH) ,
6.86 (t, J = 3.0 Hz, IH) , 6.73-6.67 (m, IH) , 5.10-5.01 (m,
2H) , 4.90-4.88 (m, 2H) , 4.33-4.18 (m, 2H) , 4.06-3.59 (m,
6H) , 3.41-3.06 (m, 3H) , 2.92-2.55 (m, 3H) , 1.94-1.25 (m,
2H) ppm.
[00118] Peracetylated intermediate (5) :
To a solution of 4 (0.79 g, 1.63 mmol) in pyridine (8 rtiL)
was added acetic anhydride (1.66 g, 1.54 πiL, 16.3 mmol) and
the reaction was stirred at room temperature for 6 hours.
Thin layer chromatography (1/1 Hex/EA) indicated no
remaining 4. The reaction was diluted with ethyl acetate
and washed with IM HCl (3X) , water, saturated NaHCO j , brine,
dried over Na 2 SO 4 , filtered, and concentrated. Purification
by column chromatography on silica gel (1/1 Hex/EtOAc)
afforded 5 as a foamy solid (0.86 g, 86%). 1 H NMR (CDCl 3 ,
300 MHz) δ7.72 (t, J = 2.5 Hz, IH), 7.45-7.36 (m, 5H),
7.11-6.86 (m, 2H), 6.61 (t, J = 3.0 Hz, IH), 5.42-5.36 (m,
3H), 5.25-5.17 (m, 3H), 4.29-4.23 (m, IH), 4.16-4.09 (m,
IH), 3.59-3.10 (m, 4H), 2.66-2.49 (m, IH), 2.08 (s, 3H),
2.05 (s, 3H), 1.88-1.61 (m, 6H) ppm.
[00119] Bromo derivative (6) :
[00120] A mixture of 5 (0.20 g, 0.327 mmol) and
potassium acetate (0.096 g, 0.981 mmol) in chloroform (10
mL) was cooled to 0 C and a solution of bromine (0.063g,
0.02mL, 0.393 mmol) in chloroform (1 mL) was added dropwise
via syringe. The reaction was stirred at 0 C for 20 min.
Thin layer chromatography (1/1 Hex/EA) indicated no
remaining 5 . The reaction was diluted with brine and
dichloromethane . The layers were separated and the
organics were washed with saturated Na 2 S 2 O 3 , brine, dried
over Na 2 SO 4 , filtered, and concentrated. Purification by
column chromatography on silica gel {1/1 Hex/EtOAc)
afforded 6 as a foamy solid (0.206 g, 91%). 1 H NMR (CDCl 3 ,
300 MHz) 57.69 (m, IH), 7.46-7.35 (m, 5H), 6.91 (t, J =
3.0 Hz, IH), 6.61 (t, J = 3.0 Hz, IH), 5.58-5.39 (m, 3H),
5.26-5.08 (m, 3H), 4.37-4.32 (m, IH), 4.19-4.09 (m, IH),
3.61-3.07 (m, 4H), 2.71-2.55 (m, IH), 2.09 (s, 3H), 2.05
(s, 3H), 1.96-1.51 (m, 6H) ppm.
(00121] 2 -Arylindole intermediate (7) :
[00122] A mixture of 6 (0.21 g, 0.297 mmol}, potassium
carbonate (0.14 g, 1.04 mmol), and 4- fluorobenzeneboronic
acid (0.054 g, 0.386 mmol) in toluene (12 mL) and ethanol
(6 mL) was degassed by pulling a vacuum until bubbling
occurred. Added next was tetrakis-triphenylphosphine
palladium (0) (0.017g, 0.015 mmol) and the mixture was
degassed again, placed in an oil bath preheated at 90 C,
and stirred for 3 hours. Thin layer chromatography (2/1
Hex/EA) indicated no remaining 6. The reaction was cooled
to room temperature, diluted with ethyl acetate and washed
with 1 M HCl, brine, dried over Na 2 SO 4 , filtered, and
concentrated. Purification by column chromatography on
silica gel (2/1 Hex/EtOAc) afforded 7 as a yellow solid
(0.048 g, 23%). 1 H NMR (CDCI j , 300 MHz) 57.88-7.75 (m,
IH), 7.40-7.19 (m, 9H), 7.01-6.91 (m, IH), 6.65 (t, J =
3.1 Hz, IH), 5.61-5.41 (m, 3H} , 5.29-4.93 (m, 3H), 4.37-
4.32 (m, IH), 4.13-4.05 (m, IH), 3.56-3.35 (m, 4H), 2.77-
2.49 (m, IH), 2.09 (s, 3H), 2.04 (s, 3H} , 1.76-1.39 (m, 6H)
ppm.
|00123] Unprotected pyrrolidine (8) :
[00124} A mixture of 7 (0.09Og, 0.128 mmol) and 10%
palladium on activated carbon (0.020 mg, 20 wt %) in
methanol {8 mL) was shaken under a hydrogen atmosphere at
45 psi on a Parr hydrogenator for 2 hours. Thin layer
chromatography {10% MeOH/CH ? Cl 2 ) indicated no remaining 7.
The mixture was filtered through a 0.45 uM filtering disk
and. washed with MeOH. The filtrate was concentrated and
dried under high vacuum to give 8 as a white solid {0.049
g, 67%}. 1 H NMR (CDCl 3 , 300 MHz) 57.55-7.47 (m, IH), 7.32-
7.27 (m, 2H), 7.23-7.17 (m, 3H), 6.94 (t, J = 3.0 Hz, IH),
5.66 (m, IH), 5.17-5.11 (m, 2H), 4.27 (m, IH), 3.39-3.22
(m, 2H), 3.01-2.87 (m, IH), 2.76-2.65 {m, IH), 2.05 (s,
3H), 1.99 (S, 3H), 1.72-1.47 (m, 6H) ppm.
[00125] N-Acylated intermediate (9) :
[00126] A solution of CBZ-L-tert-leucine
dicyclohexylamine salt (0.057g, 0.129 mmol) and HATU (0.049
g, 0.129 mmol) in dry 1 -methyl- 2 -pyrrolidinone (NMP) (2 mL)
was cooled to 0 C and diisopropylethyl amine (0.022 g,
0.03 mL, 0.172 mmol) was added. After stirring for 15 min
a solution of 8 (0.049 g, 0.086 mmol) in NMP (2 mL) was
added and the reaction was stirred at 0 C for 2 hours
followed by room temperature for 1 hour. Thin layer
chromatography (2/1 Hex/EA) indicated no remaining 8. The
reaction was diluted with ether and washed with 1 M HCl,
water, saturated NaHCO 3 , brine, dried over Na 2 SO 4 ,
filtered, and concentrated. Purification by column
chromatography on silica gel (2/1 Hex/EtOAc) afforded 9 as
a foamy solid (0.041 g, 58%). 1 H NMR (CDC1 J7 300 MHz) δ8.74
(d, J = 1.3 Hz, IH) , 8.43 (dd, J - 0.04, 1.8 Hz, IH) , 8.03-
7.98 {m, IH) , 7.47-7.43 (m, IH) , 7.39-7.35 (m, 8H) , 7.02-
6.97 (m, IH) , 5.62-5.59 (m, IH) , 5.42-5.36 (m, IH) , 5.20-
5.06 (m 4H) , 4.33-4.29 (m, IH) , 3.61-3.29 {m, 2H) , 2.09-
1.98 (m, 3H) , 1.75-1.69 (m, 2H) , 1.56 (m, 6H) , 1.25-1.21
(m, 6H) , 1.04-0.97 (m, 6H) ppm.
[00127] Free amine (10) :
[00128] A mixture of 9 (0.041g, 0.050 mmol) and 10%
palladium on activated carbon (0.010 mg, 20 wt %) in
methanol (8 mL) was shaken under a hydrogen atmosphere at
45 psi on a Parr hydrogenation apparatus for 2 hours. Thin
layer chromatography (10% MeOH/CH 2 Cl 2 ) indicated no
remaining 9. The mixture was filtered through a 0.45 M
filtering disk and washed with MeOH. The filtrate was
concentrated and dried under high vacuum to give 10 as a
white solid (0.034 g, 99%). Mass spectrum, m/z- 684
[M+H] +.
[00129] Cbz-protected dipeptide (11) :
[00130] A solution of Cbz-N-methyl-L-alanine (O.OlSg,
0.074 mmol) and HATU (0.028 g, 0.074 mmol) in dry 1 -methyl-
2 -pyrrolidinone (NMP) (1 mL) was cooled to 0 C and
diisopropylethyl amine (0.012 g, 0.02 mL, 0.099 mmol) was
added. After stirring for 15 min, a .solution of 10 (0,034
g, 0.0497 mraol) in NMP (2 mL) was added and the reaction
was stirred at 0 C for 2 hours followed by room
temperature for 1 hour. Thin layer chromatography (1/1
Hex/EA) indicated no remaining 10. The reaction was
diluted with ether and washed with 1 M HCl, water,
saturated NaHCO 3 , brine, dried over Na 2 SO 4 , filtered, and
concentrated to afford 11 as a foamy solid (0.044 g, 98%
crude). 1 H NMR (CDCl 3 , 300 MHz) 68.06-7.97 (m, IH), 7.39-
7.33 (m, 9H), 7.27-7.22 (m, IH), 7.01-6.96 (m, IH), 5.65
(m, IH), 5.20-5.10 (m 4H), 5.05-5.00 (m, 2H), 3.94-3.89 (m,
IH), 3.65-3.59 (m, IH), 2.88-2.80 (m, 6H), 2.08-1.98 (m,
6H), 1.37-1.23 (m, 6H), 1.04-0.97 (m, 6H), 1.05-0.90 (m,
IH) ppm.
[00131] Hydroxylated intermediate (12) :
[00132] A solution of 11 (0.044 g, 0.049 mmol) in
methanol (2 mL) was cooled to 0 C and IM sodium hydroxide
(0.X6 mL, 0.16 mmol) was added. The reaction was stirred
for 45 minutes. Thin layer chromatography (10% MeOH/CH 2 Cl 2 )
indicated no remaining 11. The reaction was diluted with
brine and saturated ammonium chloride solution and
extracted with ethyl acetate (3X) . The organic phase was
dried over Na 2 SO 4 , filtered, and concentrated. The crude
product 12 (0.037 g) was taken on without further
purification. Mass spectrum, m/z = 777.8 [M+H3+.
|00133j Final dipeptide (13) :
A mixture of 12 (Q.037g, 0.049 mmol) and 10% palladium on
activated carbon (0.010 rag, 20 wt %) in methanol {8 mL) was
shaken under a hydrogen atmosphere at 45 psi on a Parr
hydrogenation apparatus for 1.5 h. Thin layer
chromatography {10% MeOH/CH 2 CI 2 ) indicated no remaining 12.
The mixture was filtered through a 0.45 M filtering disk
and washed with MeOH. Purification by reverse phase HPLC
and lyopholization gave 13 as the monoacetate salt (0.0107
g, 34%). 1 H NMR (CDCl 3 , 300 MHz) 57.99-7.95 (m, IH), 7.43-
7.31 (m, 3H), 7.24-7.18 (m, IH), 7.01-6.94 {m, IH), 4.85-
4.82 (m, IH), 4.45 (m IH), 4.12 (m, 2H), 3.39-3.37 (m, 3H),
3.32-3.20 (m, 4H), 2.41-2.28 (m, 4H), 2.03 (br S, 4H),
1.70 (m, IH), 1.51 (m, 2 H), 1.37-1.27 (m, 3H), 1.05-0.98
(m, 9H) ppm. Mass spectrum, m/z = 643.6 [M+H]+.
(00134) Table 1: Binding of Monomeric IAP Antagonists to XIAP BIR3.
S-
Me Me tβrt -Butyl 4 - F-pϊienyl Me H H L- rucoβe B
OH
R Me Me JR- (Me) CHOMe H 4-F-phenyl Me H H L- fucose B S Me Me tert -Butyl H 4-F-phenyl Me H H L-fucose B
S-
Me Me tert -Butyl 4 - F-pb.enyl H F L- fucose A
OH
S-
O Me Me B - (Me) CHOMe 4 - F-phenyl H F L- fucose A
OH
[00135] Preparation of a Dimeric IAP Antagonist (Formula
23, below. Referred to as Compound ["V,"] in Table 2, below.
II
100137} Indoylindoline (14) : Fluoroindole 1 {3.55 g,
10.0 mmol) was dissolved in trifluoroacetic acid (15 mL) at
0 0 C. After 3 h, the solvent was removed in vacuo and the
residue was dissolved in EtOAc. The EtOAc solution was
washed twice with saturated aqueous NaHCO 3 and once with
brine. The combined aqueous washes were twice back-
dried over anhydrous Na 2 SO 4 , filtered, and concentrated.
The crude product was purified by flash silica gel
chromatography (hexane/EtOAc , 2:1) to afford 2.48 g of 2 as
a foamy solid. Mass spectrum, m/z 705.1 [M + H]+.
[00138] Scheme III
[00139] Carbohydrate -linked indoylindoline (15) : A
mixture of 14 (1.24 g, 1.76 mmol) , L- ( - ) - fucose (0.87 g,
5.27 mmol), and powdered (NHJ 2 SO, (0.7O g, 5.27 mmol) in
absolute EtOH (25 mL) was heated at 75 0 C for 24 h. The
reaction mixture was absorbed onto silica gel and the
product was eluted using 2-5% MeOH in DCM. The fractions
containing the two diastereomeric products [TLC analysis:
10% MeOH/DCM, R r (14} = 0.8; R f (15) - 0.4 and 0.5] were
combined and concentrated to provide 0.89 g of 15 which was
used directly in the next reaction. Mass spectrum, m/z
851.2 [M + H] +.
me IV
(00141] Carbohydrate-linked biindole (16) : At ambient
temperature, DDQ (0,28 g, 1.25 mmol) was added to a
solution of 15 (0.89 g, 1.04 mmol) in 1,4-dioxane (10 mL) .
After 1 h, the reaction mixture was diluted with EtOAc and
washed three times with 0.5 M NaOH, once with brine, dried
over anhydrous Na ? SO 4 , filtered, and concentrated to afford
crude 16 which was used without further purification. Mass
spectrum, m/ z 849.2 [M + H] + .
Scheme V
|00143] Peracetylated intermediate (17) : To a solution
of crude 16 (1.04 mmol) in anhydrous pyridine (10 mL) was
added Ac,Q (1.07 g, 10.4 mmol) at ambient temperature.
After 16 h, the reaction mixture was diluted with EtOAc and
washed three times with IN HCl, once with brine, dried over
anhydrous Na 2 SO 4 , filtered, and concentrated. The crude
product was purified by flash silica gel chromatography
(EtOAc/hexane, 1:1) to afford 0.82 g of 17 as a solid.
Mass spectrum, m/z 975.2 [M]+.
[00144] Scheme VI
Bis-pyrrolidine (18) : A mixture of 17 (0.82 g, 0.84 mmol )
and 10% Pd-on-C (0.16 g, 20 wt %} in MeOH (20 mL} was
placed on a Parr apparatus and shaken under 50 PSI H ^
atmosphere. After 2 h, the reaction mixture was filtered
using a 0.45 μ filter disc which was subsequently washed
with excess MeOH. The clarified filtrate was concentrated
in vacuo to yield 0.57 g of crude 18 which was used without
further purification. Mass spectrum, m/z 354.6 [(M -f 2H) /2]+.
[00145| Scheme VII
[00146] Cbz -Valine-linked intermediate (19) : A solution
containing Cbz-L-VaI -OH (0.47 g, 1.87 mmol) and HATU (0.67
g, 1.77 mmol} in anhydrous NMP (5 mL} was cooled to 0 0 C.
DIPEA (0.28 g, 2.18 mmol) was added via syringe followed by
the addition of 18 (0.57 g, 0.81 mmol) in NMP (5 mL) . The
reaction mixture was slowly warmed to ambient temperature
and the reaction was maintained for -16 h. The reaction
mixture was diluted with diethyl ether and washed
successively with IN HCl, water (excess) , saturated aqueous
NaHCO 3 , and brine. The organic phase was dried over
anhydrous Na 2 SO 4 , filtered, and concentrated. The crude
product was purified by flash silica gel chromatography {2%
MeOH/DCM) to provide 0.76 g of 19 as a foamy solid. Mass
spectrum, m/ z 1174.4 (M + H)+.
[00147] Scheme VIII
[001481 Diamine (20) : A mixture of 19 (0.76 g, 0.65
mmol) and 10% Pd-on-C (0.15 g, 20 wt %) in MeOH (15 mL) was
placed on a Parr apparatus and shaken under 50 PSI H 2
atmosphere. After 3 h, the reaction mixture was filtered
using a 0.45 μ filter disc which was subsequently washed
with excess MeOH. The clarified filtrate was concentrated
in vacuo to yield 0.57 g of crude 20 which was used without
further purification. Mass spectrum, m/z 452.8 [M +
2H/2] +.
|00149] Scheme IX
BIs-[CbZ-N(Me)AIa] intermediate (21): A solution
containing CbZ-L-N(Me)AIa-OH (0.28 g, 1.18 tnmol) and HATU
(0.43 g, 1.13 rnmol) in anhydrous NMP (4 mL) was cooled to 0
0 C. DIPEA (0.18 g, 1.38 mmol) was added via syringe
followed by the addition of 20 (0.47 g, 0.51 mmol) in NMP
(4 mL) . The reaction mixture was slowly warmed to ambient
temperature and the reaction was maintained for about 16 h.
The reaction mixture was diluted with diethyl ether and
washed successively with IN HCl, water (excess), saturated
aqueous NaHCO 3 , and brine. The organic phase was dried over
anhydrous Na 2 SO 4 , filtered, and concentrated to provide 0.69
g of crude 21 as a solid. Mass spectrum, m/z 1343.4 (M)+.
[001501 Scheme X
Hydroxylated pyranose (22) : To a solution of 21 (0.69 g,
0.51 mmol) in MeOH (20 mL} was added IN NaOH (1.7 mL, 1.7
mmol) at 0 0 C. After 2 h, the reaction mixture was diluted
with saturated aqueous NH 4 Cl and brine and the product was
extracted with EtOAc. The combined organic extracts were
dried over anhydrous Na 2 SO 4 , filtered, and concentrated to
afford 0.62 g of crude 22 which was used without further
purification .
[00151] Scheme XI
Dimeric IAP Antagonist (23) : A mixture of 22 (0.62 g, 0.51
mmol) and 10% Pd-on-C (0.15 g, 20 wt %) in MeOH (20 mL) was
atmosphere. After 4 h, the reaction mixture was filtered
using a 0.45 μ filter disc which was subsequently washed
with excess MeOH. The clarified filtrate was concentrated
in vacuo. The crude product was purified by reverse-phase
HPLC (2" Dynamax Cl8 column; Flow rate: 40 mL/min;
Detector; 254 nm; Method: 10-50% ACN/water containing 0.1%
HOAc over 25 min) . The product-containing fractions were
combined and concentrated in vacuo to remove excess ACN
then lyophilized to dryness to provide 0.23 g of 23-2HOAc
as a flocculent white solid. Mass spectrum, m/ z 475.8 [(M +
2H)/2] +.
[00152] Table 2: Binding of Dimeric IAP Antagonists to XIAP BIR3
[00153] Preparation of Smac Mimetic (Piperidine-
substituted Monomer, Formula 30, below. Referred to as
Compound "[HH]" in Table 3, below.)
cheme XII
[00155) N-Alkylated indoline (24) : To a solution
containing indoline 2 (4.6 g, 13.0 tnmol) in glacial HOAc
{40 mL) was added 4-BOC-piperidone (2.85 g, 14.3 mmol) .
After 10 min, Na(AcO) 3 BH {4.13 g, 19.5 mmol) was added in
small portions over 40 min maintaining the temperature
below 30 0 C. After 1 h, the reaction mixture was diluted
with water and EtOAc. Aqueous NaOH (IM) was added and the
layers were separated. The organic phase was washed with
IM NaOH until pH = 12, then washed with brine, dried over
anhydrous Na 2 SO 4 , filtered and concentrated to afford crude
24 (quant.) as an oil which was used without further
purification. 1 H NMR (300 MHz, CDCl 3 ): 7.35-7.35 (m, 5H),
6.92-6.78 (m, IH), 6.25-6.18 (m, IH), 6.09-6.06 {m, IH),
5.12-5.09 {m, 2H), 4.22 (br, 2H), 3.87-3.70 (m, IH), 3.55-
3.41 (m, 3H) , 3.21-3.02 (m, 3H) , 2.75-2.72 (br, 2H} , 1.98-
1.60 (m, 8H) , 1.49-1.46 (m, 9H) ppm.
XIII
[00157] Indole (25) : To a solution containing crude
indoline 24 (7.46 g, 13 mmol) in anhydrous 1,4-dioxane (75
TTiL) was added 2 , 3 -dichloro-5 , 6~dicyanobenzoquinone (3.78 g,
16.6 mraol) in small portions. After 2 h, the reaction
mixture was diluted with EtOAc, and filtered through
Celite ® . The pad was washed with EtOAc and the filtrate
was washed with saturated aqueous NaHCO 3 , brine, dried over
anhydrous Na 2 SO 4 , filtered and concentrated. The product
was purified by flash silica gel column chromatography [2:1
hexane/EtOAc] to afford 3.81 g (51%) indole 25. 1 H NMR (300
MHz, CDClj) : -1:1 mixture of carbamate rotomers, 7.71-7.67
(m, 0.5H), 7.43-7.38 (m, 5H), 7.18-7.14 (m, 0.5H), 6.99-
6.82 (m, 2.5H), 6.61 (t, J = 2.9 Hz, 0.5H), 5.19 (s, 2H),
4.30-4.08 (m, 2H), 3.74-3.70 (m, 0.5H), 3.46-3.39 (m, 2H),
2.88 (br m, 2H) , 2.72-2.54 (m, IH) , 2.44 (t, J = 2.0 Uz,
0.5H) , 2.00 (br, IH) , 1.85-1.67 (m, 6H) , 1.49 (s, 9H) ppm.
[00158J Scheme XIV
[00159] Bromoindole (26) : A solution containing indole
25 {3.81 g, 7.12 mmol) in CHCl, (100 raL) was cooled to 0 0 C
and KOAc (2.1 g, 21.4 πirool) was added followed by the
dropwise addition of a solution of bromine (1.35 g, 8.54
mmol) in CHCl 3 (5 mL) . After 1 h, the reaction mixture was
diluted with brine and DCM. The layers were separated and
the organic phase was washed with saturated aqueous Na 2 S 2 O 4 ,
brine, dried over anhydrous Na 2 SO 4 , filtered and
concentrated. The product was purified by flash silica gel
column chromatography [2:1 hexane/EtOAc] to afford 2.78 g
(64%) of bromoindole 26 as a yellow solid. 3 H NMR (300 MHz,
CDCl 3 ): -1:1 mixture of carbamate rotomers, 7.76-7.71 (m,
0.5H), 7.45-7.32 (m, 5H), 7.13-7.06 (m, 1.5 H), 6.86 (t, J
= 2.6 Hz, 0.5H), 6.56 (t, J = 2.9 Hz), 0.5H), 5.22-5.18 <m,
2H), 4.59-4.55 (br, IH), 4.32-4.23 (br, 2H), 3.59-3.34 (m,
2H) , 3.29 (eld, J = 4.6, 1.0 Hz, 0.5H) , 3.07 (dd, J = 4.6,
1.2 Hz, 0.5H) , 2.86 (br, 2H) , 2.74-2.61 (m, IH) , 2.41 (br,
2H) , 1.76-1.65 (m, 5H) , 1.52 {s, 9H) ppm .
[00161] 2 -Substituted indole (27) : A mixture containing
bromoindole 26 (2.78 g, 4.52 mmol) , K 2 CO 3 (2.19 g, 11.3
mmol) and 4 -fluorobenzeneboronic acid {0.82 g, 5.88 mmol)
in toluene (21 mL) and EtOH (7 mL) was degassed under
vacuum. After the addition of (Ph 3 P) 1 Pd(O) (0.26 g, 0.23
mmol) , the mixture was degassed again and placed in an oil
bath preheated at 90 0 C. After 2.5 h, the reaction mixture
was cooled to ambient temperature and diluted with EtOAc,
washed with IM HCl, brine, dried over anhydrous Na 2 SO,,
filtered and concentrated. The product was purified by
flash silica gel column chromatography [2:1 hexane/EtOAc]
to afford 2.46 g (86%) of indole 27 as a yellow solid. 1 H
NMR (300 MHz, CDCl 3 ); -1:1 mixture of carbamate rotomers,
7.88-7.84 (πi, 0.5H), 7.38-7.14 {m, 10.5H), 6.94-6.87 (m, n cu \
(m, 2H) , 3.30-3.25 (m, 2H) , 3.03 (dd, J = 4.6 Hz, 1.3 Hz,
0.5H) , 2.82 (br, 0.5H) , 2.61-2.57 {m, 2H) , 2.44-2.28 (m,
4H) , 1.83-1.74 (m, IH) , 1.62-1.53 (m, 2H) , 1.52-1.46 {m,
9H) , 1.41-1.37 (m, 2H) ppm.
[0θ162J Scheme XVI
[00163] Cbz-protected amine (28) : A mixture containing
indole 27 (2,46 g, 3.91 mmol) and 10% Pd/C (480 mg, 20 wt
%) in MeOH (25 mL) was shaken under a hydrogen atmosphere
(50 psi) using a Parr apparatus. After 5 h, the reaction
mixture was filtered through Celite ® and the pad was washed
with MeOH. The filtrate was concentrated and the residue
was purified by flash silica gel column chromatography [2%
to 20% MeOH/DCM] to afford 550 mg of intermediate amine.
Mass spectrum, m/z - 495.6 [M+] .
[0θ164J A solution containing Cbz-L~ tert-leucine
dicyclohexylamine salt (644 mg, 1.44 mmol) and HATU (548
mg, 1.44 mmol) in NMP (7 mL) was cooled to 0 0 C and DIPEA
(0.29 g, 2.22 mmol) was added. After 15 min, a solution
containing the previously-prepared intermediate amine (550
ττig, 1.11 mmol) in NMP (5 mL) was added. The reaction
mixture was stirred to ambient temperature. After 16 h,
the reaction mixture was diluted with diethyl ether, washed
with IM HCl, water, saturated aqueous NaHCO 3 , water, and
brine. The organic phase was dried over anhydrous Na 2 SO 11 ,
filtered and concentrated. The product was purified by
flash silica gel column chromatography [1:1 hexane/EtOAc]
to afford 111 mg {13%) of amide 28 as a foam. 1 H NMR (300
MHz, CDCl 3 ): 8.03-7.99 (m, IH), 7.34-7.12 (m, 10H), 7.02-
6.91 (m, IH), 5.62-5.58 <m, IH), 5.16-5.02 (m, 2H), 4.49-
4.47 {m, IH), 4.32-4.08 (m, 2H), 3.99-3.94 (m, IH), 3.61-
3.43 (m, IH), 3.31-3.27 (m, IH), 2.59 (br, IH), 2.41-2.17
(m, 2H), 1.88-1.84 {m, IH), 1.57 (m, 5H), 1.49 (s, 9H),
1.31-1.19 (m, 4H), 1.01-0.95 (m, 9H) ppm. Mass spectrum,
m/z = 743.7 [M + H] +.
10 me XVII
(00166J Boc-protected peptide (29 ) : A mixture of amide
MeOH (10 mL) was shaken under a hydrogen atmosphere at (45
psi) using a Parr apparatus. After 2 h, the reaction
mixture was filtered through a 0.45 mM filter disc which
was rinsed with excess MeOH. The filtrate was concentrated
to afford 69 mg of intermediate amine. Mass spectrum, m/z = 608.7 [M+] .
[00167] A solution containing Boc-N (Me) Ala-OH (35 mg,
0.17 mmol) and HATU (65 mg, 0.17 mmol} in NMP (2 mL) was
cooled to 0 0 C and DIPEA (0.029 g, 0.23 mmol) was added.
After 15 min, a solution containing the previously-prepared
intermediate amine (69 mg, 0.11 mmol) in NMP {3 mL) was
added. The reaction was stirred to ambient temperature
over 2 h then diluted with diethyl ether and washed
successively with IM HCl, water, saturated aqueous NaHCO^,
water, and brine. The organic phase was dried over
anhydrous Na 2 SO 4 , filtered and concentrated to afford 105 mg
of crude Boc-peptide 29 as a foam which was used directly
without further purification. Mass spectrum, m/z = 793.9
[M + ] .
[00168) Scheme XVIII
[00169J Dipeptide (30) : To a solution containing Boc-
peptide 29 (100 mg, 0.13 mmol) in DCM (10 tnL) was added TFA
(2 mL) at 0 0 C. After 1 h, the solvent was removed in vacuo
and the residue was dissolved in EtOAc, washed
successively with saturated aqueous NaHCO 3 , brine, dried
over anhydrous Na^SO 4 , filtered and concentrated. The crude
product was purified by C18 reverse-phase HPLC [10% to 70%
ACN/water containing 0.1% v/v HOAc]. Lyophilization of the
product-containing fractions afforded 28 mg (38%) of
dipeptide 30 as a white solid. 1 H NMR (300 MHz, CDCl 3 ) :
8.03-7.98 (m, IH), 7.86-7.69 (m, 2H), 7.59-7.46 (m, IH),
7.28-7.17 (m, 5H), 7.05-6.91 (m, IH), 4.94-4.77 (br m, 5H),
4.59 (d, J = 3.2 Uz 1 IH), 4.49-4.46 (m, IH), 3.97 (br m,
2H), 3.72-3.20 (m, 3H), 2.13-3.05 (m, IH), 2.89-2.62 (m,
3H), 2.40-2.18 (m, 2H), 2.08-1.94 (m, 3H), 1.08-0.95 (m,
10H) ppiru Mass spectrum, m/z = 593.7 [M+] .
|00170] Table 3. Binding of Monomeric IAP Antagonists to
[00171) in mammalian cells, activation of the caspases
is achieved through at least two independent mechanisms
which are initiated by distinct caspases, but result in the
activation of common executioner (effector) caspases. In
addition to the cytochrome c activated mechanism (somphimpQ
referred to as the 'intrinsic death pathway'} is a
mechanism by which the caspase cascade is activated via
activation of a death receptor located on the cell membrane
(sometimes referred to as the 'extrinsic death pathway 1 }.
Examples of death receptors include CD- 95 and TNF-Rl {as
well as other members of the TNF group of cytokine
receptors) . The corresponding ligands are CD-95L and TNF-
alpha, respectfully. Binding of pro-caspase-8 to the death
receptor induces auto-activation wherein the inhibitory
pro-domain of pro-caspase-8 is cleaved and removed.
Caspase-8 is released from the receptor and can then
activate effector caspases (caspase-3, -6, -7), and, as in
the caspase- 9 initiated pathway, the result is the
proteolytic cleavage of cellular targets by the effector
caspases and the induction of apoptosis.
[00172J The present invention is directed generally to
Smac peptidomimetics and the uses of Smac peptidomimetics .
In one embodiment the Smac peptidomimetics act as
chemopotentiating agents. The term "chemopotentiating
agent" refers to an agent that acts to increase the
sensitivity of an organism, tissue, or cell to a chemical
compound, or treatment namely "chemotherapeutic agents" or
"chemo drugs 11 or radiation treatment. One embodiment of
the invention is the therapeutic composition of a Smac
peptidomimetic . A further embodiment of the invention is
the therapeutic composition of a Smac peptidomimetic, which
can act as a chemopotentiating agent (herein referred to as
Smac mimetic) , and a biological or chemotherapeutic agent
or radiation. Another embodiment of the invention is a
method of inhibiting tumor growth in vivo by administering
a Smac peptidomimetic. Another embodiment of the invention
is a method of inhibiting tumor growth in vivo by
administering a Smac mimetic and a biologic or
chemotherapeutic agent or chemoradiation. Another
embodiment of the invention is a method of treating a
patient with a cancer by administering Smac mimetics of the
present invention alone or in combination with a
chemotherapeutic agent or chemoradiation.
[00173} In an embodiment of the present invention, the
cells are in situ, in an individual, and the contacting
step is effected by administering a pharmaceutical
composition comprising a therapeutically effective amount
of the Smac mimetic wherein the individual may be subject
to concurrent or antecedent radiation or chemotherapy for
treatment of a neoproliterative pathology. The pathogenic
cells are of a tumor such as, but not limited to, bladder
cancer, breast cancer, prostate cancer, lung cancer,
pancreatic cancer, gastric cancer, colon cancer, ovarian
cancer, renal cancer, hepatoma, melanoma, lymphoma,
sarcoma, and combinations thereof.
|00174) As described in US 7,244,851, IAP antagonists
can be used for the treatment of all cancer types which
fail to undergo apoptosis. Examples of such cancer types
include neuroblastoma, intestine carcinoma such as rectum
carcinoma, colon carcinoma, familiary adenomatous polyposis
carcinoma and hereditary non-polyposis colorectal cancer,
esophageal carcinoma, labial carcinoma, larynx carcinoma,
hypopharynx carcinoma, tong carcinoma, salivary gland
carcinoma, gastric carcinoma, adenocarcinoma, medullary
thyroidea carcinoma, papillary thyroidea carcinoma, renal
carcinoma, kidney parenchym carcinoma, ovarian carcinoma,
cervix carcinoma, uterine corpus carcinoma, endometrium
carcinoma, chorion carcinoma, pancreatic carcinoma,
prostate carcinoma, testis carcinoma, breast carcinoma,
urinary carcinoma, melanoma, brain tumors such as
glioblastoma, astrocytoma, meningioma, medulloblastoma and
peripheral neuroectodermal tumors, Hodgkin lymphoma, non-
Hodgkin lymphoma, Burkitt lymphoma, acute lymphatic
leukemia (ALL) , chronic lymphatic leukemia (CLL) , acute
myeloid leukemia (AML) , chronic myeloid leukemia (CML) ,
adult T~cell leukemia lymphoma, hepatocellular carcinoma,
gall bladder carcinoma, bronchial carcinoma, small cell
lung carcinoma, non-small cell lung carcinoma, multiple
myeloma, basalioma, teratoma, retinoblastoma, choroidea
melanoma, seminoma, rhabdomyo sarcoma, craniopharyngeoma,
osteosarcoma, chondrosarcoma, myosarcoma, liposarcoma,
fibrosarcoma, Ewing sarcoma and plasmocytoma.
[00175] In addition to apoptosis defects found in
tumors, defects in the ability to eliminate self -reactive
cells of the immune system due to apoptosis resistance are
considered to play a key role in the pathogenesis of
autoimmune diseases . Autoimmune diseases are characterized
in that the cells of the immune system produce antibodies
against its own organs and molecules or directly attack
tissues resulting in the destruction of the latter. A
failure of those self -reactive cells to undergo apoptosis
leads to the manifestation of the disease. Defects in
apoptosis regulation have been identified in autoimmune
diseases such as systemic lupus erthematosus or rheumatoid
arthritis
[00176] In an embodiment the pathogenic cells are those
of any autoimmune disease or diseases which are resistant
to apoptosis due to the expression of IAPs or members of
the BcI -2 family Examples of such autoimmune diseases are
collagen diseases such as rheumatoid arthritis, systemic
lupus erythematosus, Sharp's syndrome, CREST syndrome
(calcinosis, Raynaud's syndrome, esophageal dysmotility,
telangiectasia), dermatomyositis, vasculitis (Morbus
Wegener's) and Sjogren's syndrome, renal diseases such as
Goodpasture's syndrome, rapidly-progressing
glomerulonephritis and membrano-proliferative
glomerulonephritis type II, endocrine diseases such as
type- I diabetes, autoimmune polyendocπnopathy-candidiasis-
ectodermal dystrophy (APECED) , autoimmune parathyroidism,
pernicious anemia, gonad insufficiency, idiopathic Morbus
Addison's, hyperthyreosis, Hashimoto's thyroiditis and
primary myxedema, skxn diseases such as pemphigus vulgaris,
bullous pemphigoid, herpes gestatioms, epidermolysis
bullosa and erythema multiforme major, liver diseases such
as primary biliary cirrhosis, autoimmune cholangitis,
autoimmune hepatitis type-1, autoimmune hepatitis type- 2,
primary sclerosing cholangitis, neuronal diseases such as
multiple sclerosis, myasthenia gravis, myasthenic Lambert -
Eaton syndrome, acquired neuromyotony, Guillain-Barre
syndrome (Mύller-Fischer syndrome}, stiff-man syndrome,
cerebellar degeneration, ataxia, opsoklonus, sensoric
neuropathy and achalasia, blood diseases such as autoimmune
hemolytic anemia, idiopathic thrombocytopenic purpura
(Morbus Werlhof) , infectious diseases with associated
autoimmune reactions such as AIDS, Malaria and Chagas
disease .
[00177) The subject compositions encompass
pharmaceutical compositions comprising a therapeutically
effective amount of a Smac mimetic in dosage form and a
pharmaceutically acceptable carrier, wherein the Smac
mimetic inhibits the activity of an Inhibitor of Apoptosis
protein (IAP), thus promoting apoptosis. Another
embodiment of the present invention are compositions
comprising a therapeutically effective amount of a Smac
mimetic in dosage form and a pharmaceutically acceptable
carrier, in combination with a chemotherapeutic and/or
radiotherapy, wherein the Smac mimetic inhibits the
activity of an Inhibitor of Apoptosis protein (IAP), thus
promoting apoptosis and enhancing the effectiveness of the
chetnotherapeutic and/or radiotherapy.
[00178] In an embodiment of the invention a therapeutic
composition for promoting apoptosis can be a
therapeutically effective amount of a Smac peptidomimetic
which binds to at least one IAP. In one embodiment the IAP
can be XIAP. In another embodiment the IAP can be ML-IAP.
In another embodiment the IAP can cIAP-1 or cIAP-2. In a
further embodiment the IAP can be multiple IAP types.
{00179) Embodiments of the invention also include a
method of treating a patient with a condition in need
thereof wherein administration of a therapeutically
effective amount of a Smac peptidomimetic is delivered to
the patient, and the Smac peptidomimetic binds to at least
one IAP. In one embodiment the IAP can be XIAP. In
another embodiment the IAP can be ML-IAP. In another
embodiment the IAP can cIAP-l or cIAP-2. In a further
embodiment the IAP can be multiple IAP types.
The method may further include the concurrent
administration of another chemotherapeutic agent . The
chemotherapeutic agent can be, but is not limited to,
alkylating agents, antimetabolites, anti- tumor antibiotics,
taxanes, hormonal agents, monoclonal antibodies,
glucocorticoids, mitotic inhibitors, topoisomerase I
inhibitors, topoisomerase II inhibitors, immunomodulating
agents, cellular growth factors, cytokines, and
nonsteroidal anti- inflammatory compounds.
[00180] Administration of Smac peptidomimetics The Smac
peptidomimetics can be administered in effective amounts.
An effective amount is that amount of a preparation that
alone, or together with further doses, produces the desired
response. This may involve only slowing the progression of
the disease temporarily, although preferably, it involves
halting the progression of the disease permanently or
delaying the onset of or preventing the disease or
condition from occurring. This can be monitored by routine
methods. Generally, doses of active compounds would be
from about 0.01 mg/kg per day to 1000 mg/kg per day. It is
expected that doses ranging from 50-500 mg/kg will be
suitable, preferably intravenously, intramuscularly, or
intradermalIy, and in one or several administrations per
day. The administration of the Smac peptidomimetic can
occur simultaneous with, subsequent to, or prior to
chemotherapy or radiation so long as the chemotherapeutic
agent or radiation sensitizes the system to the Smac
peptidomimetic .
[00181] In general, routine experimentation in clinical
trials will determine specific ranges for optimal
therapeutic effect for each therapeutic agent and each
administrative protocol, and administration to specific
patients will be adjusted to within effective and safe
ranges depending on the patient condition and
responsiveness to initial administrations. However, the
ultimate administration protocol will be regulated
according to the judgment of the attending clinician
considering such factors as age, condition and size of the
patient, the Smac peptidomimetic potencies, the duration of
the treatment and the severity of the disease being
treated. For example, a dosage regimen of the Smac
peptidomimetic can be oral administration of from 1 mg to
2000 mg/day, preferably 1 to 1000 mg/day, more preferably
50 to 600 mg/day, in two to four (preferably two) divided
doses, to reduce tumor growth. Intermittent therapy (e.g.,
one week out of three weeks or three out of four weeks) may
also be used.
|00182] In the event that a response in a subject is
insufficient at the initial doses applied, higher doses (or
effectively higher doses by a different, more localized
delivery route) may be employed to the extent that the
patient tolerance permits . Multiple doses per day are
contemplated to achieve appropriate systemic levels of
compounds. Generally, a maximum dose is used, that is, the
highest safe dose according to sound medical judgment.
Those of ordinary skill in the art will understand,
however, that a patient may insist upon a lower dose or
tolerable dose for medical reasons, psychological reasons
or for virtually any other reason.
[00183] Embodiments of the invention also include a
method of treating a patient with cancer by promoting
apoptosis wherein administration of a therapeutically
effective amount of a Smac peptidomimetic, and the Smac
peptidomirnetic binds to at least one IAP, In one
embodiment the IAP can be XIAP . In another embodiment the
IAP can be ML-IAP, In another embodiment the IAP can cIAP-
1 or cIAP- 2. In a further embodiment the IAP can be
multiple IAP types. The method may further include
concurrent administration of a chemotherapeutic agent. The
chemotherapeutic agent can be, but is not limited to,
alkylating agents, antimetabolites, anti-tumor antibiotics,
taxanes, hormonal agents, monoclonal antibodies,
glucocorticoids, mitotic inhibitors, topoisomerase I
inhibitors, topoisomerase II inhibitors, immunomodulating
agents, cellular growth factors, cytokines, and
nonsteroidal anti -inflammatory compounds.
|00184] Routes of administration A variety of
administration routes are available. The particular mode
selected will depend, of course, upon the particular
chemotherapeutic drug selected, the severity of the
condition being treated and the dosage required for
therapeutic efficacy. The methods of the invention,
generally speaking, may be practiced using any mode of
administration that is medically acceptable, meaning any
mode that produces effective levels of the active compounds
without causing clinically unacceptable adverse effects.
Such modes of administration include, but are not limited
to, oral, rectal, topical, nasal, intradermal, inhalation,
intra-peritoneal , or parenteral routes. The term
"parenteral" includes subcutaneous, intravenous,
intramuscular, or infusion. Intravenous or intramuscular
routes are particularly suitable for purposes of the
present invention.
[00185] In one aspect of the invention, a Smac
peptidomimetic as described herein, with or without
additional biological or chemotherapeutic agents or
radiotherapy, does not adversely affect normal tissues,
while sensitizing tumor cells to the additional
chemotherapeutic/radiation protocols . While not wishing to
be bound by theory, it would appear that because of this
tumor specific induced apoptosis, marked and adverse side
effects such as inappropriate vasodilation or shock are
minimized. Preferably, the composition or method is
designed to allow sensitization of the cell or tumor to the
chemotherapeutic or radiation therapy by administering at
least a portion of the Smac peptidomimetic prior to
chemotherapeutic or radiation therapy. The radiation
therapy, and/or inclusion of chemotherapeutic agents, may
be included as part of the therapeutic regimen to further
potentiate the tumor cell killing by the Smac
peptidomimetic .
[00186] Pharmaceutical compositions In one embodiment
of the invention, an additional chemotherapeutic agent
(infra) or radiation may be added prior to, along with, or
following the Smac peptidomimetic . The term
"pharmaceutically-acceptable carrier" as used herein means
one or more compatible solid or liquid fillers, diluents or
encapsulating substances which are suitable for
administration into a human. The term "carrier" denotes an
organic or inorganic ingredient, natural or synthetic, with
which the active ingredient is combined to facilitate the
application. The components of the pharmaceutical
compositions also are capable of being co-mingled with the
molecules of the present invention, and with each other, in
a manner such that there is no interaction which would
substantially impair the desired pharmaceutical efficacy.
[00187] The delivery systems of the invention are
designed to include time-released, delayed release or
sustained release delivery systems such that the delivering
of the Smac peptidomimetic occurs prior to, and with
sufficient time, to cause sensitization of the site to be
treated. A Smac peptidomimetic may be used in conjunction
with radiation and/or additional anti-cancer chemical
agents (infra) . Such systems can avoid repeated
administrations of the Smac peptidomimetc compound,
increasing convenience to the subject and the physician,
and may be particularly suitable for certain compositions
of the present invention.
|00188j Many types of release delivery systems are
available and known to those of ordinary skill in the art.
They include polymer base systems such as poly (lactide-
glycolide) , copolyoxalates, polycaprolactones,
polyesteramides, polyorthoesters , polyhydroxybutyric acid,
and polyanhydrides . Microcapsules of the foregoing
polymers containing drugs are described in, for example,
U.S. Pat. No. 5,075,109. Delivery systems also include
non-polymer systems that are: lipids including sterols such
as cholesterol, cholesterol esters and fatty acids or
neutral fats such as mono-di-and tri-glycerides; hydrogel
release systems; sylastic systems; peptide based systems;
wax coatings; compressed tablets using conventional binders
and excipients; partially fused implants; and the like.
Specific examples include, but are not limited to: (a)
erosional systems in which the active compound is contained
in a form within a matrix such as those described in U.S.
Pat. Nos, 4,452,775, 4,667,014, 4,748,034 and 5,239,660
and (b) diffusional systems in which an active component
permeates at a controlled rate from a polymer such as
described in U.S. Pat. Nos . 3,832,253, and 3,854,480. In
addition, pump-based hardware delivery systems can be used,
some of which are adapted for implantation.
[00189] use of a long-term sustained release implant may
be desirable. Long-term release, are used herein, means
that the implant is constructed and arranged to deliver
therapeutic levels of the active ingredient for at least 30
days, and preferably 60 days. Long-term sustained release
implants are well-known to those of ordinary skill in the
art and include some of the release systems described
above .
[00190] The pharmaceutical compositions may conveniently
be presented in unit dosage form and may be prepared by any
of the methods well known in the art of pharmacy. All
methods include the step of bringing the active agent into
association with a carrier that constitutes one or more
accessory ingredients. In general, the compositions are
prepared by uniformly and intimately bringing the active
compound into association with a liquid carrier, a finely
divided solid carrier, or both, and then, if necessary,
shaping the product .
(00191] Compositions suitable for parenteral
administration conveniently comprise a sterile aqueous
preparation of a chemopotentiatmg agent (e.g. Smac
peptidomimetic) , which is preferably isotonic with the
blood of the recipient. This aqueous preparation may be
formulated according to known methods using suitable
dispersing or wetting agents and suspending agents. The
sterile injectable preparation also may be a sterile
injectable solution or suspension in a non-toxic
parenterally-acceptable diluent or solvent, for example, as
a solution in 1, 3 -butane diol . Among the acceptable
vehicles and solvents that may be employed are water,
Ringer's solution, and isotonic sodium chloride solution.
In addition, sterile, fixed oils are conventionally
employed as a solvent or suspending medium. For this
purpose any bland fixed oil may be employed including
synthetic mono-or di-glycerxdes . In addition, fatty acids
such as oleic acid may be used in the preparation of
injectables Carrier formulation suitable for oral,
subcutaneous, intravenous, intramuscular, etc
administrations can be found in. Remington's Pharmaceutical
Sciences, Mack Publishing Co., Easton, PA which is
incorporated herein in its entirety by reference thereto,
[00192J Addi tiona.1 chemotherapeutic agents
Cheπrotherapeutic agents suitable, include but are not
limited to the chemotherapeutic agents described in "Modern
Pharmacology with Clinical Applications", Sixth Edition,
Craig & Stitzel, Chpt . 56, pg 639-656 (2004), herein
incorporated by reference. This reference describes
chemotherapeutic drugs to include alkylating agents,
antimetabolites, anti- tumor antibiotics, plant-derived
products such as taxanes, enzymes, hormonal agents such as
glucocorticoids, miscellaneous agents such as cisplatin,
monoclonal antibodies, immunomodulating agents such as
interferons, and cellular growth factors. Other suitable
classifications for chemotherapeutic agents include mitotic
inhibitors and nonsteroidal anti -estrogenic analogs. Other
suitable chemotherapeutic agents include toposiomerase I
and II inhibitors and kinase inhibitors.
[00193} Specific examples of suitable biological and
chemotherapeutic agents include, but are not limited to,
cisplatin, carmustine (BCNU), 5 -flourouracil (5-FU),
cytarabine (Ara-C) , gemcitabine, methotrexate,
daunorubicln, doxorubicin, dexamethasone, topotecan,
etoposide, paclitaxel, vincristine, tamoxifen, TNF-alpha,
TRAIL, interferon (in both its alpha and beta forms) ,
thalidomide, and melphalan. Other specific examples of
suitable chemotherapeutic agents include nitrogen mustards
such as cyclophosphamide, alkyl sulfonates, nitrosoureas,
ethylenimines , triazenes, folate antagonists, purine
analogs, pyrimidine analogs, anthracyclines, bleomycins,
mitomycins, dactinomycins , plicamycin, vinca alkaloids,
epipodophyllotoxins, taxanes, glucocorticoids, L-
asparaginase, estrogens, androgens, progestins, luteinizing
hormones, octreotide actetate, hydroxyurea, procarbazine,
mitotane, hexamethylmelamine, carboplatin, mitoxantrone ,
monoclonal antibodies, levamisole, interferons,
interleukins , filgrastim and sargramostim.
Chemotherapeutic compositions also comprise other members,
i.e., other than TRAIL, of the TNF superfarnily of
compounds .
|00194) Radiotherapy protocols Additionally, in several
method embodiments of the present invention the Smac
peptidomimetic therapy may be used in connection with
chemo-radiation or other cancer treatment protocols used to
inhibit tumor cell growth.
|00I95J For example, but not limited to, radiation
therapy (or radiotherapy) is the medical use of ionizing
radiation as part of cancer treatment to control malignant
cells is suitable for use in embodiments of the present
invention. Although radiotherapy is often used as part of
curative therapy, it is occasionally used as a palliative
treatment, where cure is not possible and the aim is for
symptomatic relief . Radiotherapy is commonly used for the
treatment of tumors . It may be used as the primary
therapy. It is also common to combine radiotherapy with
surgery and/or chemotherapy. The most common tumors
treated with radiotherapy are breast cancer, prostate
cancer, rectal cancer, head & neck cancers, gynecological
tumors, bladder cancer and lymphoma. Radiation therapy is
commonly applied just to the localized area involved with
the tumor. Often the radiation fields also include the
draining lymph nodes. It is possible but uncommon to give
radiotherapy to the whole body, or entire skin surface.
Radiation therapy is usually given daily for up to 35-38
fractions {a daily dose is a fraction) . These small
frequent doses allow healthy cells time to grow back,
repairing damage inflicted by the radiation. Three main
divisions of radiotherapy are external beam radiotherapy or
teletherapy, brachytherapy or sealed source radiotherapy
and unsealed source radiotherapy, which are all suitable
examples of treatment protocol in the present invention.
The differences relate to the position of the radiation
source; external is outside the body, while sealed and
unsealed source radiotherapy has radioactive material
delivered internally. Brachytherapy sealed sources are
usually extracted later, while unsealed sources are
injected into the body. Administration of the Smac
peptidomiinetic may occur prior to, concurrently with the
treatment protocol. Annexin V/Propidium Iodide Staining-To
show the ability of Smac mimetics to induce apoptosis,
Annexin V- fluorescein isothiocyanate staining was performed
as per manufacturer's protocol {Invitrogen, Carlsbad, CA).
Briefly, cells were exposed to various concentrations of
Smac mimetics for 18-24 hrs . and then removed from the
assay plate by trypsinization . Cells were then pelleted
and resuspended m assay buffer (supplied by manufacturer) ,
Annexin V and propidium iodide were added to the cell
temperature . Following the incubation additional buffer
(200 μl) was then added to each tube, and the samples were
analyzed immediately by flow cytometry. In the presence of
Smac mimetics apoptosis was strongly promoted, as assessed
by annexin/PI staining and analyzed by flow cytometry. The
amplification in the number of apoptotic cells (Annexin V
positive/propidium iodide negative - lower right quadrant)
by IAP antagonists as compared to control was dose
dependent and due to the induction of apoptosis and not via
increasing the proportion of necrotic cells.
[00196) Biological and chemotherapeutics/anti -neoplastic
agents and radiation induce apoptosis by activating the
extrinsic or intrinsic apoptotic pathways, and, since Smac
mimetics relieve inhibitors of apoptotic proteins (IAPs)
and, thus, remove the block in apoptosis, the combination
of chemotherapeutics/anti-neoplastic agents and radiation
with Smac mimetics should work synergistically to
facilitate apoptosis.
|00197] The relevance of this potent synergy is that it
makes possible the use of the Smac peptidomimetics, which
are IAP antagonists, to improve the efficacy of the
marketed platinum containing compounds (cisplatin and
carboplatin) . This may be accomplished by lowering the
required dose of the poorly tolerated platinum containing
compounds and/or by improving the response rate at the
marketed dose,
[00198] The present invention is not limited to the
embodiments described and exemplified above, but is capable
of variation and modification within the scope of the
appended claims ,
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