Title:
METHOD AND APPARATUS FOR OBJECT BASED BIOLOGICAL INFORMATION, MANIPULATION AND MANAGEMENT
Document Type and Number:
WIPO Patent Application WO2004114191
Kind Code:
A3
Abstract:
A biological data manipulation system, and a programming language and system, and a method of use thereof, are disclosed. The system, apparatus, and method include a first data file receiver for receiving a first data file having,data indicative of a first data file type and data indicative of at least one biological data object, a first classifier that applies a plurality of rules to the first data file to parse the first data file into a first data file type and into a plurality of string classes, a second classifier that differentiates a master class for ones of the plurality of string classes, wherein the master class is differentiated against at least one selected from the group consisting of a single biosequence master and a multiple biosequence master, and a third classifier that classifies an at least one biological data object of the first data file, wherein the at least one biological data object is multiple inherited to the master class in accordance with at least one of the plurality of rules, and in accordance with at least a partial sequence of stored biodata compared by the third classifier against at least a partial sequence of at least one of the plurality of string classes.
Inventors:
PRASAD BURRA V L S (IN)
Application Number:
PCT/EP2004/006620
Publication Date:
June 09, 2005
Filing Date:
June 18, 2004
Export Citation:
Assignee:
HELIX GENOMICS PVT LTD (IN)
TERRAMARK MARKENCREATION GMBH (DE)
PRASAD BURRA V L S (IN)
TERRAMARK MARKENCREATION GMBH (DE)
PRASAD BURRA V L S (IN)
International Classes:
G16B50/30; G01N33/48; G01N33/50; (IPC1-7): G06F19/00
Domestic Patent References:
| WO2002025570A2 | 2002-03-28 |
Other References:
STAJICH JE ET AL: "The Bioperl Toolkit: Perl Modules for the Life Sciences", GENOME RESEARCH, vol. 12, no. 10, October 2002 (2002-10-01), pages 1611 - 1618, XP002321765
POCOCK M, DOWN T, HUBBARD T: "BioJava: Open Source Components for Bioinformatics", ACM SIGBIO NEWSLETTER, 2000, XP002321766, Retrieved from the Internet [retrieved on 20050318]
RAMU C, GEMÜND C, GIBSON TJ: "Object-oriented parsing of biological databases with Python", BIOINFORMATICS, vol. 16, no. 7, 2000, pages 628 - 638, XP002321767
POCOCK M, DOWN T, HUBBARD T: "BioJava: Open Source Components for Bioinformatics", ACM SIGBIO NEWSLETTER, 2000, XP002321766, Retrieved from the Internet
RAMU C, GEMÜND C, GIBSON TJ: "Object-oriented parsing of biological databases with Python", BIOINFORMATICS, vol. 16, no. 7, 2000, pages 628 - 638, XP002321767
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