Title:
METHODS OF IDENTIFYING, SELECTING, AND PRODUCING DISEASE RESISTANT CROPS
Document Type and Number:
WIPO Patent Application WO/2021/143587
Kind Code:
A1
Abstract:
The field is related to plant breeding and methods of identifying and selecting plants with disease resistance. Provided are methods to identify novel genes that encode proteins providing plant disease resistance and uses thereof. These disease resistant genes are useful in the production of resistant plants through breeding, transgenic modification, or genome editing.
Inventors:
LAI ZHIBING (CN)
WANG HONGZE (CN)
HOU JIABAO (CN)
WANG HONGZE (CN)
HOU JIABAO (CN)
Application Number:
PCT/CN2021/070402
Publication Date:
July 22, 2021
Filing Date:
January 06, 2021
Export Citation:
Assignee:
UNIV HUAZHONG AGRICULTURAL (CN)
International Classes:
A01H6/46; C07K14/415; C12N15/82
Domestic Patent References:
| WO2010083178A1 | 2010-07-22 | |||
| WO2019236257A1 | 2019-12-12 | |||
| WO2003054229A2 | 2003-07-03 | |||
| WO2000028058A2 | 2000-05-18 |
Foreign References:
| US20090144863A1 | 2009-06-04 | |||
| US7803992B2 | 2010-09-28 | |||
| US5563055A | 1996-10-08 | |||
| US5981840A | 1999-11-09 | |||
| US4945050A | 1990-07-31 | |||
| US5879918A | 1999-03-09 | |||
| US5886244A | 1999-03-23 | |||
| US5932782A | 1999-08-03 | |||
| US5240855A | 1993-08-31 | |||
| US5322783A | 1994-06-21 | |||
| US5324646A | 1994-06-28 | |||
| US5736369A | 1998-04-07 | |||
| US20130019349A1 | 2013-01-17 |
Other References:
XIUPING WANG ET AL: "Gene expression profiles in maize (L.) leaves inoculation with southern corn rust (Underw.)", ACTA PHYSIOLOGIAE PLANTARUM, SPRINGER-VERLAG, BERLIN/HEIDELBERG, vol. 34, no. 3, 24 November 2011 (2011-11-24), pages 997 - 1006, XP035042679, ISSN: 1861-1664, DOI: 10.1007/S11738-011-0896-4
CHUNJIANG ZHOU ET AL: "Characterization and fine mapping of RppQ, a resistance gene to southern corn rust in maize", MOLECULAR GENETICS AND GENOMICS, SPRINGER, BERLIN, DE, vol. 278, no. 6, 17 October 2007 (2007-10-17), pages 723 - 728, XP019563938, ISSN: 1617-4623, DOI: 10.1007/S00438-007-0288-Z
YA ZHANG ET AL: "Mapping of southern corn rust-resistant genes in the W2D inbred line of maize (Zea mays L.)", MOLECULAR BREEDING, KLUWER ACADEMIC PUBLISHERS, DO, vol. 25, no. 3, 8 October 2009 (2009-10-08), pages 433 - 439, XP019793258, ISSN: 1572-9788
BREWBAKER, J.L. ET AL.: "General resistance in maize to southern rust (Puccinia polysora Underw.", CROP SCIENCE, vol. 51, no. 4, 2011, pages 1393 - 1409
JINES, M. P. ET AL.: "Mapping resistance to Southern rust in a tropical by temperate maize recombinant inbred topcross population", THEORETICAL AND APPLIED GENETICS, vol. 114, no. 4, 2007, pages 659 - 667, XP019487571
ZHANG, Y. ET AL.: "Mapping of southern corn rust-resistant genes in the W2D inbred line of maize (Zea mays L.", MOLECULAR BREEDING, vol. 25, no. 3, 2010, pages 433 - 439, XP019793258
ZHOU CJ ET AL.: "Characterization and fine mapping of RppQ, a resistance gene to southern corn rust in maize", MOL GENET GENOMICS, vol. 278, 2007, pages 723 - 728, XP019563938, DOI: 10.1007/s00438-007-0288-z
HOLLAND, J. B. ET AL.: "Inheritance of resistance to southern corn rust in tropical-by-corn-belt maize populations", THEORETICAL AND APPLIED GENETICS, vol. 96, no. 2, 1998, pages 232 - 241
MEYERS ET AL., PLANT CELL, vol. 15, 2003, pages 809 - 834
MONOSI ET AL., THEORETICAL AND APPLIED GENETICS, vol. 109, 2004, pages 1434 - 1447
PALOMINO ET AL., GENOME RESEARCH, vol. 12, 2002, pages 1305 - 1315
PAN ET AL., JOURNAL OF MOLECULAR EVOLUTION, vol. 50, 2000, pages 203 - 213
VAN DER BIEZEN ET AL., CURRENT BIOLOGY: CB, vol. 8, 1998, pages R226 - R227
MICHELMORE ET AL., GENOME RES., vol. 8, 1998, pages 1113 - 1130
HALLAUER ET AL.: "Corn breeding", 1998, article "Corn and corn improvement", pages: 463 - 564
SMITH ET AL., THEOR. APPL. GEN., vol. 80, 1990, pages 833 - 840
MIKELDUDLEY, CROP SCI, vol. 46, 2006, pages 1193 - 1205
HILL, W.G.ROBERTSON, A, THEOR. APPL. GENET., vol. 38, 1968, pages 226 - 231
ARDLIE ET AL., NATURE REVIEWS GENETICS, vol. 3, 2002, pages 299 - 309
RISCH, SCIENCE, vol. 255, 1992, pages 803 - 804
CORDER ET AL.: "Protective effect of apolipoprotein-E type-2 allele for late-onset Alzheimer-disease", NAT GENET, vol. 7, 1994, pages 180 - 184
HASTBACKA ET AL.: "Linkage disequilibrium mapping in isolated founder populations: diastrophic dysplasia in Finland", NAT GENET, vol. 2, 1992, pages 204 - 211
KEREM ET AL.: "Identification of the cystic fibrosis gene: genetic analysis", SCIENCE, vol. 245, 1989, pages 1073 - 1080, XP000068212
REMINGTON ET AL.: "Structure of linkage disequilibrium and phenotype associations in the maize genome", PROC NATL ACAD SCI USA, vol. 98, 2001, pages 11479 - 11484
THORNSBERRY ET AL.: "Dwarj8 polymorphisms associate with variation in flowering time", NAT GENET, vol. 28, 2001, pages 286 - 289, XP002967872, DOI: 10.1038/90135
FLINT-GARCIA ET AL.: "Structure of linkage disequilibrium in plants", ANNU REV PLANT BIOL, vol. 54, 2003, pages 357 - 374, XP055467132, DOI: 10.1146/annurev.arplant.54.031902.134907
WALLPRITCHARD: "Haplotype blocks and linkage disequilibrium in the human genome", NAT REV GENET, vol. 4, 2003, pages 587 - 597
FLINT-GARCIA ET AL.: "Structure of linkage disequilibrium in plants", ANNU REV PLANT BIOL., vol. 54, 2003, pages 357 - 374, XP055467132, DOI: 10.1146/annurev.arplant.54.031902.134907
LANDERBOTSTEIN, GENETICS, vol. 121, 1989, pages 185 - 199
STAUB ET AL., HORTSCIENCE, vol. 31, 1996, pages 729 - 741
TANKSLEY, PLANT MOLECULAR BIOLOGY REPORTER, vol. 1, 1983, pages 3 - 8
GEPTS, CROP SCI, vol. 42, 2002, pages 1780 - 1790
YOUNG ET AL., GENETICS, vol. 120, 1998, pages 579 - 585
TANKSLEY ET AL., BIOTECHNOLOGY, vol. 7, 1989, pages 257 - 264
TAUTZ, NUCLEIC ACID RESEARCH, vol. 17, 1989, pages 6463 - 6471
WANG ET AL., THEORETICAL AND APPLIED GENETICS, vol. 88, 1994, pages 1 - 6
LEVINSONGUTMAN, MOL BIOL EVOL, vol. 4, 1987, pages 203 - 221
WEBERMAY, AM J HUM GENET, vol. 44, 1989, pages 388 - 396
RAFALSKI ET AL.: "Non-mammalian genomic analysis: a practical guide", 1996, ACADEMIC PRESS, article "Generating and using DNA markers in plants", pages: 75 - 135
BHATTRAMAKKI ET AL., PLANT MOL BIOL, vol. 48, 2002, pages 539 - 547
BHATTRAMAKKI ET AL., PLANT MOLECULAR BIOLOGY, vol. 48, 2002, pages 539 - 547
GUT, HUM MUTAT, vol. 17, 2001, pages 475 - 492
SHI, CLIN CHEM, vol. 47, 2001, pages 164 - 172
KWOK, PHARMACOGENOMICS, vol. 1, 2000, pages 95 - 100
BHATTRAMAKKIRAFALSKI: "Plant Genotyping: The DNA Fingerprinting of Plants", 2001, CABI PUBLISHING, article "Discovery and application of single nucleotide polymorphism markers in plants"
CHING ET AL., BMC GENET, vol. 3, 2002, pages 19
GUPTA ET AL., PLANT SCIENCE, vol. 162, 2001, pages 329 - 333
STEVENS, MOL. DIAG., vol. 4, 1999, pages 309 - 17
BALLAS ET AL., NUCLEIC ACIDS RES., vol. 17, 1989, pages 7891 - 7903
BENFEY, EMBO J, vol. 9, 1990, pages 1685 - 96
CHRISTOUFORD, ANNALS OF BOTANY, vol. 75, 1995, pages 407 - 413
"PCR Methods Manual", 1999, ACADEMIC PRESS
"NCBI", Database accession no. S94464
GALLIE ET AL., GENE, vol. 60, 1987, pages 217 - 25
GUERINEAU ET AL., MOL. GEN. GENET., vol. 262, 1991, pages 141 - 144
PROUDFOOT, CELL, vol. 64, 1991, pages 671 - 674
SANFACON ET AL., GENES DEV, vol. 5, 1991, pages 141 - 149
MOGEN ET AL., PLANT CELL, vol. 2, 1990, pages 1261 - 1272
MUNROE ET AL., GENE, vol. 91, 1990, pages 151 - 158
JOSHI ET AL., NUCLEIC ACID RES., vol. 15, 1987, pages 9627 - 9639
CAMPBELLGOWRI, PLANT PHYSIOL., vol. 92, 1990, pages 1 - 11
MURRAY ET AL., NUCLEIC ACIDS RES, vol. 17, 1989, pages 477 - 498
CROSSWAY ET AL., BIOTECHNIQUES, vol. 4, 1986, pages 320 - 334
RIGGS ET AL., PROC. NATL. ACAD. SCI. USA, vol. 83, 1986, pages 5602 - 5606
PASZKOWSKI ET AL., EMBO J, vol. 3, 1984, pages 2717 - 2722
MCCABE ET AL., BIOTECHNOLOGY, vol. 6, 1988, pages 559 - 563
TU ET AL., PLANT MOLECULAR BIOLOGY, vol. 37, 1998, pages 829 - 838
CHONG ET AL., TRANSGENIC RESEARCH, vol. 9, 2000, pages 71 - 78
WEISSINGER ET AL., ANN. REV. GENET., vol. 22, 1988, pages 421 - 477
SANFORD ET AL., PARTICULATE SCIENCE AND TECHNOLOGY, vol. 5, 1987, pages 27 - 37
CHRISTOU ET AL., PLANT PHYSIOL, vol. 91, 1988, pages 440 - 444
MCCABE ET AL., BIO/TECHNOLOGY, vol. 6, 1988, pages 923 - 926
FINERMCMULLEN, VITRO CELL DEV. BIOL., vol. 27, 1991, pages 175 - 182
SINGH ET AL., THEOR. APPL. GENET., vol. 96, 1998, pages 319 - 324
FROMM ET AL., BIOTECHNOLOGY, vol. 8, 1990, pages 833 - 839
KLEIN ET AL., PROC. NATL. ACAD. SCI. USA, vol. 85, 1988, pages 4305 - 4309
HOOYKAAS-VAN SLOGTEREN ET AL., NATURE (LONDON, vol. 311, 1984, pages 763 - 764
BYTEBIER ET AL., PROC. NATL. ACAD. SCI. USA, vol. 84, 1987, pages 5345 - 5349
DE WET ET AL.: "The Experimental Manipulation of Ovule Tissues", 1985, LONGMAN, pages: 197 - 209
KAEPPLER ET AL., PLANT CELL REPORTS, vol. 9, 1990, pages 415 - 418
KAEPPLER ET AL., THEOR. APPL. GENET., vol. 84, 1992, pages 560 - 566
D'HALLUIN ET AL., PLANT CELL, vol. 4, 1992, pages 1495 - 1505
LI ET AL., PLANT CELL REPORTS, vol. 12, 1993, pages 250 - 255
OSJODA ET AL., NATURE BIOTECHNOLOGY, vol. 14, 1996, pages 745 - 750
CHUNJIANG ZHOU ET AL: "Characterization and fine mapping of RppQ, a resistance gene to southern corn rust in maize", MOLECULAR GENETICS AND GENOMICS, SPRINGER, BERLIN, DE, vol. 278, no. 6, 17 October 2007 (2007-10-17), pages 723 - 728, XP019563938, ISSN: 1617-4623, DOI: 10.1007/S00438-007-0288-Z
YA ZHANG ET AL: "Mapping of southern corn rust-resistant genes in the W2D inbred line of maize (Zea mays L.)", MOLECULAR BREEDING, KLUWER ACADEMIC PUBLISHERS, DO, vol. 25, no. 3, 8 October 2009 (2009-10-08), pages 433 - 439, XP019793258, ISSN: 1572-9788
BREWBAKER, J.L. ET AL.: "General resistance in maize to southern rust (Puccinia polysora Underw.", CROP SCIENCE, vol. 51, no. 4, 2011, pages 1393 - 1409
JINES, M. P. ET AL.: "Mapping resistance to Southern rust in a tropical by temperate maize recombinant inbred topcross population", THEORETICAL AND APPLIED GENETICS, vol. 114, no. 4, 2007, pages 659 - 667, XP019487571
ZHANG, Y. ET AL.: "Mapping of southern corn rust-resistant genes in the W2D inbred line of maize (Zea mays L.", MOLECULAR BREEDING, vol. 25, no. 3, 2010, pages 433 - 439, XP019793258
ZHOU CJ ET AL.: "Characterization and fine mapping of RppQ, a resistance gene to southern corn rust in maize", MOL GENET GENOMICS, vol. 278, 2007, pages 723 - 728, XP019563938, DOI: 10.1007/s00438-007-0288-z
HOLLAND, J. B. ET AL.: "Inheritance of resistance to southern corn rust in tropical-by-corn-belt maize populations", THEORETICAL AND APPLIED GENETICS, vol. 96, no. 2, 1998, pages 232 - 241
MEYERS ET AL., PLANT CELL, vol. 15, 2003, pages 809 - 834
MONOSI ET AL., THEORETICAL AND APPLIED GENETICS, vol. 109, 2004, pages 1434 - 1447
PALOMINO ET AL., GENOME RESEARCH, vol. 12, 2002, pages 1305 - 1315
PAN ET AL., JOURNAL OF MOLECULAR EVOLUTION, vol. 50, 2000, pages 203 - 213
VAN DER BIEZEN ET AL., CURRENT BIOLOGY: CB, vol. 8, 1998, pages R226 - R227
MICHELMORE ET AL., GENOME RES., vol. 8, 1998, pages 1113 - 1130
HALLAUER ET AL.: "Corn breeding", 1998, article "Corn and corn improvement", pages: 463 - 564
SMITH ET AL., THEOR. APPL. GEN., vol. 80, 1990, pages 833 - 840
MIKELDUDLEY, CROP SCI, vol. 46, 2006, pages 1193 - 1205
HILL, W.G.ROBERTSON, A, THEOR. APPL. GENET., vol. 38, 1968, pages 226 - 231
ARDLIE ET AL., NATURE REVIEWS GENETICS, vol. 3, 2002, pages 299 - 309
RISCH, SCIENCE, vol. 255, 1992, pages 803 - 804
CORDER ET AL.: "Protective effect of apolipoprotein-E type-2 allele for late-onset Alzheimer-disease", NAT GENET, vol. 7, 1994, pages 180 - 184
HASTBACKA ET AL.: "Linkage disequilibrium mapping in isolated founder populations: diastrophic dysplasia in Finland", NAT GENET, vol. 2, 1992, pages 204 - 211
KEREM ET AL.: "Identification of the cystic fibrosis gene: genetic analysis", SCIENCE, vol. 245, 1989, pages 1073 - 1080, XP000068212
REMINGTON ET AL.: "Structure of linkage disequilibrium and phenotype associations in the maize genome", PROC NATL ACAD SCI USA, vol. 98, 2001, pages 11479 - 11484
THORNSBERRY ET AL.: "Dwarj8 polymorphisms associate with variation in flowering time", NAT GENET, vol. 28, 2001, pages 286 - 289, XP002967872, DOI: 10.1038/90135
FLINT-GARCIA ET AL.: "Structure of linkage disequilibrium in plants", ANNU REV PLANT BIOL, vol. 54, 2003, pages 357 - 374, XP055467132, DOI: 10.1146/annurev.arplant.54.031902.134907
WALLPRITCHARD: "Haplotype blocks and linkage disequilibrium in the human genome", NAT REV GENET, vol. 4, 2003, pages 587 - 597
FLINT-GARCIA ET AL.: "Structure of linkage disequilibrium in plants", ANNU REV PLANT BIOL., vol. 54, 2003, pages 357 - 374, XP055467132, DOI: 10.1146/annurev.arplant.54.031902.134907
LANDERBOTSTEIN, GENETICS, vol. 121, 1989, pages 185 - 199
STAUB ET AL., HORTSCIENCE, vol. 31, 1996, pages 729 - 741
TANKSLEY, PLANT MOLECULAR BIOLOGY REPORTER, vol. 1, 1983, pages 3 - 8
GEPTS, CROP SCI, vol. 42, 2002, pages 1780 - 1790
YOUNG ET AL., GENETICS, vol. 120, 1998, pages 579 - 585
TANKSLEY ET AL., BIOTECHNOLOGY, vol. 7, 1989, pages 257 - 264
TAUTZ, NUCLEIC ACID RESEARCH, vol. 17, 1989, pages 6463 - 6471
WANG ET AL., THEORETICAL AND APPLIED GENETICS, vol. 88, 1994, pages 1 - 6
LEVINSONGUTMAN, MOL BIOL EVOL, vol. 4, 1987, pages 203 - 221
WEBERMAY, AM J HUM GENET, vol. 44, 1989, pages 388 - 396
RAFALSKI ET AL.: "Non-mammalian genomic analysis: a practical guide", 1996, ACADEMIC PRESS, article "Generating and using DNA markers in plants", pages: 75 - 135
BHATTRAMAKKI ET AL., PLANT MOL BIOL, vol. 48, 2002, pages 539 - 547
BHATTRAMAKKI ET AL., PLANT MOLECULAR BIOLOGY, vol. 48, 2002, pages 539 - 547
GUT, HUM MUTAT, vol. 17, 2001, pages 475 - 492
SHI, CLIN CHEM, vol. 47, 2001, pages 164 - 172
KWOK, PHARMACOGENOMICS, vol. 1, 2000, pages 95 - 100
BHATTRAMAKKIRAFALSKI: "Plant Genotyping: The DNA Fingerprinting of Plants", 2001, CABI PUBLISHING, article "Discovery and application of single nucleotide polymorphism markers in plants"
CHING ET AL., BMC GENET, vol. 3, 2002, pages 19
GUPTA ET AL., PLANT SCIENCE, vol. 162, 2001, pages 329 - 333
STEVENS, MOL. DIAG., vol. 4, 1999, pages 309 - 17
BALLAS ET AL., NUCLEIC ACIDS RES., vol. 17, 1989, pages 7891 - 7903
BENFEY, EMBO J, vol. 9, 1990, pages 1685 - 96
CHRISTOUFORD, ANNALS OF BOTANY, vol. 75, 1995, pages 407 - 413
"PCR Methods Manual", 1999, ACADEMIC PRESS
"NCBI", Database accession no. S94464
GALLIE ET AL., GENE, vol. 60, 1987, pages 217 - 25
GUERINEAU ET AL., MOL. GEN. GENET., vol. 262, 1991, pages 141 - 144
PROUDFOOT, CELL, vol. 64, 1991, pages 671 - 674
SANFACON ET AL., GENES DEV, vol. 5, 1991, pages 141 - 149
MOGEN ET AL., PLANT CELL, vol. 2, 1990, pages 1261 - 1272
MUNROE ET AL., GENE, vol. 91, 1990, pages 151 - 158
JOSHI ET AL., NUCLEIC ACID RES., vol. 15, 1987, pages 9627 - 9639
CAMPBELLGOWRI, PLANT PHYSIOL., vol. 92, 1990, pages 1 - 11
MURRAY ET AL., NUCLEIC ACIDS RES, vol. 17, 1989, pages 477 - 498
CROSSWAY ET AL., BIOTECHNIQUES, vol. 4, 1986, pages 320 - 334
RIGGS ET AL., PROC. NATL. ACAD. SCI. USA, vol. 83, 1986, pages 5602 - 5606
PASZKOWSKI ET AL., EMBO J, vol. 3, 1984, pages 2717 - 2722
MCCABE ET AL., BIOTECHNOLOGY, vol. 6, 1988, pages 559 - 563
TU ET AL., PLANT MOLECULAR BIOLOGY, vol. 37, 1998, pages 829 - 838
CHONG ET AL., TRANSGENIC RESEARCH, vol. 9, 2000, pages 71 - 78
WEISSINGER ET AL., ANN. REV. GENET., vol. 22, 1988, pages 421 - 477
SANFORD ET AL., PARTICULATE SCIENCE AND TECHNOLOGY, vol. 5, 1987, pages 27 - 37
CHRISTOU ET AL., PLANT PHYSIOL, vol. 91, 1988, pages 440 - 444
MCCABE ET AL., BIO/TECHNOLOGY, vol. 6, 1988, pages 923 - 926
FINERMCMULLEN, VITRO CELL DEV. BIOL., vol. 27, 1991, pages 175 - 182
SINGH ET AL., THEOR. APPL. GENET., vol. 96, 1998, pages 319 - 324
FROMM ET AL., BIOTECHNOLOGY, vol. 8, 1990, pages 833 - 839
KLEIN ET AL., PROC. NATL. ACAD. SCI. USA, vol. 85, 1988, pages 4305 - 4309
HOOYKAAS-VAN SLOGTEREN ET AL., NATURE (LONDON, vol. 311, 1984, pages 763 - 764
BYTEBIER ET AL., PROC. NATL. ACAD. SCI. USA, vol. 84, 1987, pages 5345 - 5349
DE WET ET AL.: "The Experimental Manipulation of Ovule Tissues", 1985, LONGMAN, pages: 197 - 209
KAEPPLER ET AL., PLANT CELL REPORTS, vol. 9, 1990, pages 415 - 418
KAEPPLER ET AL., THEOR. APPL. GENET., vol. 84, 1992, pages 560 - 566
D'HALLUIN ET AL., PLANT CELL, vol. 4, 1992, pages 1495 - 1505
LI ET AL., PLANT CELL REPORTS, vol. 12, 1993, pages 250 - 255
OSJODA ET AL., NATURE BIOTECHNOLOGY, vol. 14, 1996, pages 745 - 750
Attorney, Agent or Firm:
CHINA PATENT AGENT (H.K.) LTD. (CN)
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